Wall clock time and date at job start Tue Mar 31 2020 13:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21583 * 119.99832 * 359.97438 * 17 16 15 19 19 C 1.47513 * 120.00047 * 180.02562 * 17 16 15 20 20 C 1.36683 * 126.82625 * 179.71518 * 19 17 16 21 21 C 1.42170 * 103.78975 * 179.87603 * 20 19 17 22 22 C 1.48225 * 126.84952 * 180.11784 * 21 20 19 23 23 O 1.21410 * 120.00122 * 0.29125 * 22 21 20 24 24 O 1.34644 * 120.00216 * 180.29994 * 22 21 20 25 25 N 1.30991 * 106.30268 * 0.38235 * 21 20 19 26 26 O 1.20867 * 111.80674 * 359.75476 * 25 21 20 27 27 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 28 28 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 30 30 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 31 31 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 32 32 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 33 33 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 34 34 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 35 35 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 36 36 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 37 37 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 38 38 H 1.08004 * 128.10779 * 359.95663 * 20 19 17 39 39 H 0.96706 * 117.00523 * 179.97438 * 24 22 21 40 40 H 1.09004 * 109.58771 * 246.19814 * 27 9 7 41 41 H 1.08998 * 109.58854 * 6.63257 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5697 -8.1152 -0.7621 19 6 5.4467 -7.0091 -1.5995 20 6 6.0770 -8.0494 -2.2230 21 6 7.2456 -7.4562 -2.7741 22 6 8.2989 -8.1358 -3.5651 23 8 8.2076 -9.3225 -3.8048 24 8 9.3572 -7.4372 -4.0178 25 7 7.2087 -6.1905 -2.4386 26 8 6.2234 -5.9264 -1.7904 27 6 1.8152 -3.6539 -0.1863 28 1 -0.4850 0.8399 -0.0004 29 1 0.1001 -1.3265 1.6691 30 1 -0.6743 -2.6384 0.7459 31 1 1.3517 -2.9480 3.0109 32 1 -0.3776 -3.3672 3.0687 33 1 0.9907 -5.3887 2.6790 34 1 -0.0199 -5.0363 1.2570 35 1 2.5016 -6.7021 1.2763 36 1 1.6148 -6.3325 -0.2222 37 1 4.1561 -5.1085 -0.3666 38 1 5.7606 -9.0802 -2.2841 39 1 10.0185 -7.9237 -4.5288 40 1 1.0392 -4.0654 -0.8318 41 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:45 Heat of formation + Delta-G solvation = -65.971062 kcal Electronic energy + Delta-G solvation = -26667.497285 eV Core-core repulsion = 22550.575877 eV Total energy + Delta-G solvation = -4116.921408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.52027 -41.31557 -40.93953 -39.31239 -37.41966 -36.43072 -35.46254 -34.71156 -33.53645 -32.25294 -31.78979 -27.43421 -27.13611 -27.07984 -24.88995 -23.86802 -23.64833 -22.44056 -21.71231 -20.79371 -19.83385 -19.30878 -19.21949 -18.60246 -17.86303 -17.21464 -17.02163 -16.86257 -16.74291 -16.49167 -15.75218 -15.43977 -15.25403 -14.97710 -14.92308 -14.64928 -14.47142 -13.97651 -13.72004 -13.59823 -13.24582 -12.97110 -12.90308 -12.85754 -12.47240 -12.31570 -12.23621 -12.00315 -11.94861 -11.77519 -11.71377 -11.49872 -11.18496 -11.17236 -11.03208 -10.49804 -10.20917 -8.63437 -7.83760 -5.28481 -0.62538 -0.16544 1.19786 1.37298 1.48518 1.49134 1.50916 1.59958 1.77714 2.07264 2.54045 2.65518 3.31401 3.38047 3.57505 3.65824 3.71387 4.02935 4.06757 4.11678 4.16181 4.46965 4.51104 4.61541 4.66184 4.82273 4.92017 4.96588 5.03652 5.16636 5.17615 5.20690 5.34715 5.40949 5.49649 5.62566 5.71769 5.84269 6.14862 6.42931 6.48240 6.71435 6.83297 7.19020 7.91390 8.42135 9.22279 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.002764 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.489151 B =10128.570311 C =11796.321255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.962 3.038 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.610 5.610 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.103 4.103 14 H 0.080 0.920 15 C 0.134 3.866 16 N -0.698 5.698 17 C 0.611 3.389 18 O -0.537 6.537 19 C -0.074 4.074 20 C -0.093 4.093 21 C -0.033 4.033 22 C 0.583 3.417 23 O -0.511 6.511 24 O -0.493 6.493 25 N -0.296 5.296 26 O 0.162 5.838 27 C 0.148 3.852 28 H 0.248 0.752 29 H 0.049 0.951 30 H -0.008 1.008 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.417 0.583 38 H 0.211 0.789 39 H 0.445 0.555 40 H 0.010 0.990 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.696 -16.244 -1.387 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.791 3.209 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.123 4.123 14 H 0.099 0.901 15 C 0.011 3.989 16 N -0.348 5.348 17 C 0.394 3.606 18 O -0.415 6.415 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.188 4.188 22 C 0.424 3.576 23 O -0.398 6.398 24 O -0.308 6.308 25 N 0.012 4.988 26 O 0.072 5.928 27 C 0.022 3.978 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.255 0.745 38 H 0.228 0.772 39 H 0.310 0.690 40 H 0.028 0.972 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.775 -15.994 -1.468 21.160 hybrid contribution 0.285 0.709 -0.650 1.003 sum 14.060 -15.285 -2.118 20.876 Atomic orbital electron populations 1.70191 1.06734 1.25663 1.55739 1.25765 0.95933 1.01473 1.01643 0.85337 0.78387 0.79956 0.77233 1.21572 1.22278 1.19126 1.19551 0.93116 0.85983 1.40161 0.91052 1.44327 1.35965 1.02253 1.50726 1.20640 0.87681 0.97830 0.89285 1.21993 1.00903 0.96144 0.97903 1.21335 0.96545 0.96584 0.99002 1.21829 0.99288 0.93397 0.97792 0.90140 1.21513 0.83970 0.97246 0.96149 1.45956 1.24786 1.11273 1.52817 1.16354 0.81289 0.84472 0.78511 1.90893 1.58892 1.30528 1.61143 1.24155 0.96970 0.86880 1.05956 1.22991 0.90851 1.02614 0.95134 1.22416 0.98823 0.90850 1.06707 1.18845 0.79921 0.83249 0.75612 1.90957 1.77300 1.16063 1.55452 1.84555 1.32960 1.46214 1.67030 1.74274 1.02820 1.16543 1.05203 1.85029 1.23400 1.33826 1.50548 1.21185 0.97282 0.85714 0.93585 0.94305 0.93280 0.98951 0.92843 0.91412 0.89794 0.92426 0.89349 0.91064 0.74525 0.77249 0.69045 0.97241 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.72 11.19 21.65 0.24 -54.48 16 2 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 3 Si 0.96 43.84 29.59 68.60 2.03 45.87 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.26 -13.51 9.58 84.03 0.81 -12.70 16 8 H 0.07 3.58 7.89 -2.92 -0.02 3.55 16 9 N -0.61 -28.69 2.99 -698.26 -2.09 -30.77 16 10 C 0.17 7.90 5.31 86.36 0.46 8.36 16 11 C -0.13 -4.42 6.08 30.67 0.19 -4.23 16 12 C -0.10 -2.61 5.16 30.62 0.16 -2.45 16 13 C -0.10 -2.75 2.39 -10.57 -0.03 -2.77 16 14 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 15 C 0.13 2.91 5.06 86.38 0.44 3.34 16 16 N -0.70 -14.14 5.33 -466.31 -2.48 -16.63 16 17 C 0.61 13.25 7.82 86.69 0.68 13.93 16 18 O -0.54 -14.49 16.91 -3.98 -0.07 -14.56 16 19 C -0.07 -1.43 7.28 24.35 0.18 -1.25 16 20 C -0.09 -1.70 10.77 22.88 0.25 -1.46 16 21 C -0.03 -0.65 7.22 42.90 0.31 -0.34 16 22 C 0.58 10.34 8.36 70.48 0.59 10.93 16 23 O -0.51 -10.92 17.73 20.13 0.36 -10.57 16 24 O -0.49 -6.08 13.44 -55.53 -0.75 -6.83 16 25 N -0.30 -6.29 12.09 -49.01 -0.59 -6.88 16 26 O 0.16 3.18 11.01 66.15 0.73 3.91 16 27 C 0.15 5.37 5.63 86.51 0.49 5.85 16 28 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.05 2.61 6.04 -2.39 -0.01 2.60 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.42 7.66 7.54 -92.70 -0.70 6.96 16 38 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.45 0.58 9.11 -74.05 -0.67 -0.10 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.06 2.00 7.16 -2.39 -0.02 1.98 16 Total: -1.00 -70.29 354.56 2.03 -68.27 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -0.28 Total: 7.93 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 4.92 Total: 14.74 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.92 Total: -108.76 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: 0.27 Total: -28.05 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.29 2.03 -68.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.295 kcal (2) G-P(sol) polarization free energy of solvation -70.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds