Wall clock time and date at job start Tue Mar 31 2020 13:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86795 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46924 * 299.99891 * 3 2 1 6 6 H 1.48505 * 109.47231 * 59.99677 * 3 2 1 7 7 C 1.39909 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00054 * 196.84545 * 7 2 1 9 9 C 1.41158 * 119.99810 * 16.84884 * 7 2 1 10 10 C 1.40864 * 120.16136 * 25.35675 * 9 7 2 11 11 C 1.36376 * 119.82415 * 179.69703 * 10 9 7 12 12 C 1.39484 * 120.17094 * 0.27590 * 11 10 9 13 13 N 1.39241 * 119.83424 * 180.02562 * 12 11 10 14 14 C 1.34769 * 119.99886 * 34.46356 * 13 12 11 15 15 O 1.21286 * 120.00318 * 5.10117 * 14 13 12 16 16 C 1.50701 * 119.99998 * 185.09519 * 14 13 12 17 17 H 1.08995 * 115.54469 * 34.33434 * 16 14 13 18 18 C 1.52998 * 117.50065 * 248.62354 * 16 14 13 19 19 C 1.53004 * 117.49781 * 179.97438 * 16 14 13 20 20 H 1.08995 * 117.50056 * 0.02562 * 19 16 14 21 21 C 1.50702 * 117.49849 * 214.98288 * 19 16 14 22 22 C 1.38288 * 119.96766 * 299.72888 * 21 19 16 23 23 C 1.38250 * 120.10558 * 179.72541 * 22 21 19 24 24 C 1.38164 * 120.05893 * 0.54857 * 23 22 21 25 25 C 1.38706 * 119.93981 * 359.72691 * 24 23 22 26 26 O 1.35903 * 120.05439 * 179.97438 * 25 24 23 27 27 C 1.38118 * 119.97625 * 120.00012 * 21 19 16 28 28 C 1.39477 * 120.33068 * 0.02562 * 12 11 10 29 29 C 1.36376 * 120.17210 * 359.97438 * 28 12 11 30 30 H 0.96994 * 120.00173 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.09126 * 359.96959 * 10 9 7 32 32 H 1.08001 * 119.91493 * 180.24972 * 11 10 9 33 33 H 0.96994 * 119.99702 * 214.45598 * 13 12 11 34 34 H 1.08997 * 117.49906 * 359.97438 * 18 16 14 35 35 H 1.08998 * 117.49844 * 145.02739 * 18 16 14 36 36 H 1.07994 * 119.95050 * 359.97438 * 22 21 19 37 37 H 1.08002 * 119.96884 * 180.29291 * 23 22 21 38 38 H 1.07992 * 120.02828 * 179.74802 * 24 23 22 39 39 H 0.96693 * 114.00285 * 270.01738 * 26 25 24 40 40 H 1.08009 * 120.02380 * 359.97438 * 27 21 19 41 41 H 1.08001 * 119.91871 * 180.02562 * 28 12 11 42 42 H 1.08001 * 120.09219 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8839 2.3963 -1.2125 6 1 1.8839 2.3965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0535 -1.2316 0.2716 9 6 1.3479 -2.4080 -0.3533 10 6 0.2151 -2.3704 -1.1896 11 6 -0.4140 -3.5310 -1.5321 12 6 0.0582 -4.7524 -1.0518 13 7 -0.5891 -5.9331 -1.4064 14 6 -1.1423 -6.0573 -2.6290 15 8 -0.9973 -5.1787 -3.4524 16 6 -1.9412 -7.2880 -2.9731 17 1 -2.5149 -7.7203 -2.1534 18 6 -1.3485 -8.2492 -4.0053 19 6 -2.5442 -7.3691 -4.3769 20 1 -2.3627 -6.5326 -5.0517 21 6 -3.8852 -8.0416 -4.5205 22 6 -4.0368 -9.3658 -4.1521 23 6 -5.2671 -9.9839 -4.2772 24 6 -6.3457 -9.2829 -4.7814 25 6 -6.1946 -7.9562 -5.1569 26 8 -7.2539 -7.2647 -5.6537 27 6 -4.9603 -7.3364 -5.0250 28 6 1.1756 -4.7970 -0.2182 29 6 1.8151 -3.6448 0.1330 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1518 -1.4255 -1.5622 32 1 -1.2802 -3.5042 -2.1765 33 1 -0.6416 -6.6662 -0.7735 34 1 -0.3809 -7.9913 -4.4358 35 1 -1.5322 -9.3144 -3.8648 36 1 -3.1938 -9.9169 -3.7623 37 1 -5.3842 -11.0169 -3.9844 38 1 -7.3054 -9.7674 -4.8828 39 1 -7.3444 -7.3207 -6.6147 40 1 -4.8403 -6.3033 -5.3163 41 1 1.5358 -5.7464 0.1495 42 1 2.6805 -3.6809 0.7782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624402010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:00 Heat of formation + Delta-G solvation = -28.256314 kcal Electronic energy + Delta-G solvation = -24999.655978 eV Core-core repulsion = 21295.219268 eV Total energy + Delta-G solvation = -3704.436711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55187 -40.69884 -39.36588 -38.28820 -36.70814 -36.12163 -34.72777 -31.95227 -31.46374 -30.95463 -30.43337 -27.35908 -25.30942 -24.69792 -23.49422 -23.22597 -22.52099 -21.58072 -20.84627 -19.27513 -18.94857 -18.62154 -17.94099 -17.42146 -17.10034 -16.61903 -16.18004 -16.03261 -15.78804 -15.70952 -15.29582 -14.83281 -14.53706 -14.46846 -13.97276 -13.74665 -13.66000 -13.58920 -13.32240 -13.07567 -12.91293 -12.80959 -12.68215 -12.54314 -12.41400 -11.79961 -11.68918 -11.57630 -11.51051 -11.31558 -11.17653 -10.86874 -10.62172 -9.76007 -9.49435 -9.47754 -8.88240 -8.61554 -6.29427 0.23577 0.34026 0.77020 1.11492 1.36443 1.40276 1.53048 1.70137 2.19572 2.26457 2.54970 2.73391 3.02553 3.23002 3.60178 3.67877 3.72542 3.86277 3.95514 4.08151 4.18394 4.22846 4.35373 4.41063 4.43769 4.63402 4.73579 4.90783 4.94403 4.99532 5.01588 5.08317 5.10582 5.17245 5.28300 5.42032 5.46252 5.47802 5.61837 5.65129 5.84742 5.91498 6.05619 6.08832 6.31447 6.65198 6.72820 6.83445 6.90621 6.98501 7.40539 8.31871 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.002241 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.159292 B =12493.918981 C =13429.925244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.492 4.492 8 H 0.082 0.918 9 C 0.072 3.928 10 C -0.180 4.180 11 C -0.101 4.101 12 C 0.007 3.993 13 N -0.638 5.638 14 C 0.522 3.478 15 O -0.580 6.580 16 C -0.173 4.173 17 H 0.152 0.848 18 C -0.115 4.115 19 C -0.097 4.097 20 H 0.098 0.902 21 C -0.041 4.041 22 C -0.127 4.127 23 C -0.095 4.095 24 C -0.155 4.155 25 C 0.096 3.904 26 O -0.515 6.515 27 C -0.162 4.162 28 C -0.098 4.098 29 C -0.223 4.223 30 H 0.287 0.713 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.419 0.581 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.144 0.856 39 H 0.409 0.591 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -21.540 -7.678 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.522 4.522 8 H 0.100 0.900 9 C 0.070 3.930 10 C -0.201 4.201 11 C -0.121 4.121 12 C -0.087 4.087 13 N -0.283 5.283 14 C 0.312 3.688 15 O -0.460 6.460 16 C -0.194 4.194 17 H 0.170 0.830 18 C -0.152 4.152 19 C -0.116 4.116 20 H 0.116 0.884 21 C -0.041 4.041 22 C -0.145 4.145 23 C -0.113 4.113 24 C -0.174 4.174 25 C 0.052 3.948 26 O -0.328 6.328 27 C -0.180 4.180 28 C -0.118 4.118 29 C -0.243 4.243 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.256 0.744 34 H 0.116 0.884 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.268 0.732 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.594 -20.650 -7.654 24.022 hybrid contribution 0.069 1.258 -0.302 1.296 sum -9.525 -19.391 -7.956 23.023 Atomic orbital electron populations 1.69919 1.09191 1.30467 1.35809 1.26856 0.95506 1.04859 0.91306 0.85120 0.79535 0.75988 0.78826 1.17745 1.19353 1.18826 1.19843 0.98128 0.92214 1.41990 0.90025 1.18021 0.91891 0.93770 0.89365 1.20872 1.00576 0.96433 1.02174 1.20424 0.99163 0.92466 1.00050 1.17247 0.98424 0.85181 1.07825 1.42826 1.54554 1.15707 1.15167 1.20445 0.79295 0.87969 0.81129 1.90690 1.61504 1.44119 1.49712 1.22305 1.04236 0.97107 0.95770 0.83031 1.23307 0.96689 0.98017 0.97182 1.20975 0.92270 1.01971 0.96356 0.88379 1.18987 0.92258 0.94378 0.98464 1.21391 0.99170 0.93457 1.00470 1.21395 0.91512 1.01205 0.97178 1.21698 1.00946 0.93004 1.01722 1.18596 0.86064 0.90881 0.99285 1.84779 1.46220 1.72941 1.28881 1.21369 0.92714 1.00548 1.03400 1.20413 0.93611 0.98408 0.99354 1.20847 1.04274 0.92534 1.06604 0.90246 0.88623 0.89496 0.74373 0.88377 0.83413 0.82755 0.82273 0.83779 0.73225 0.86869 0.84549 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.44 10.95 21.82 0.24 -45.20 16 2 C 0.03 1.52 5.15 85.24 0.44 1.96 16 3 Si 0.98 39.47 29.59 68.60 2.03 41.50 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.49 -27.20 9.04 23.39 0.21 -26.99 16 8 H 0.08 4.28 7.90 -2.91 -0.02 4.25 16 9 C 0.07 4.04 5.57 -21.27 -0.12 3.92 16 10 C -0.18 -10.37 8.63 22.48 0.19 -10.18 16 11 C -0.10 -5.34 8.57 22.14 0.19 -5.15 16 12 C 0.01 0.30 6.27 38.56 0.24 0.54 16 13 N -0.64 -21.74 5.31 -303.11 -1.61 -23.35 16 14 C 0.52 18.17 7.33 87.66 0.64 18.81 16 15 O -0.58 -26.35 13.98 -3.05 -0.04 -26.39 16 16 C -0.17 -3.94 5.82 -11.54 -0.07 -4.01 16 17 H 0.15 2.61 8.14 -2.39 -0.02 2.59 16 18 C -0.12 -1.95 9.56 30.61 0.29 -1.65 16 19 C -0.10 -2.21 5.56 -11.52 -0.06 -2.27 16 20 H 0.10 2.83 7.67 -2.39 -0.02 2.81 16 21 C -0.04 -0.81 5.61 -19.88 -0.11 -0.93 16 22 C -0.13 -1.77 9.30 22.28 0.21 -1.56 16 23 C -0.10 -1.16 10.04 22.26 0.22 -0.93 16 24 C -0.16 -2.35 9.99 22.36 0.22 -2.12 16 25 C 0.10 1.89 6.70 22.50 0.15 2.04 16 26 O -0.52 -9.51 13.50 -92.46 -1.25 -10.75 16 27 C -0.16 -3.65 9.68 22.36 0.22 -3.44 16 28 C -0.10 -4.17 9.89 22.13 0.22 -3.95 16 29 C -0.22 -10.84 9.74 22.48 0.22 -10.62 16 30 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 31 H 0.10 5.83 6.18 -2.91 -0.02 5.81 16 32 H 0.09 4.73 6.47 -2.91 -0.02 4.71 16 33 H 0.42 10.27 8.82 -92.71 -0.82 9.45 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.15 1.30 6.17 -2.39 -0.01 1.29 16 36 H 0.15 1.24 6.01 -2.91 -0.02 1.22 16 37 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.41 3.39 9.06 -74.06 -0.67 2.72 16 40 H 0.11 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 42 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -76.32 360.24 2.28 -74.05 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.40 Total: 36.68 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 3.31 Total: -46.52 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -1.37 Total: -68.55 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.29 Total: -37.15 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -76.32 2.28 -74.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624402010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.790 kcal (2) G-P(sol) polarization free energy of solvation -76.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds