Wall clock time and date at job start Tue Mar 31 2020 14:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21260 * 119.99313 * 2 1 4 4 C 1.47179 * 120.00088 * 180.02562 * 2 1 3 5 5 C 1.39765 * 120.13781 * 5.59432 * 4 2 1 6 6 C 1.38570 * 119.74421 * 180.25050 * 5 4 2 7 7 N 1.39843 * 119.99058 * 179.73137 * 6 5 4 8 8 C 1.34779 * 119.99467 * 320.98515 * 7 6 5 9 9 O 1.21626 * 120.00465 * 4.84805 * 8 7 6 10 10 C 1.47388 * 119.99688 * 184.84371 * 8 7 6 11 11 C 1.39257 * 120.28517 * 354.78903 * 10 8 7 12 12 C 1.38194 * 120.08874 * 180.27543 * 11 10 8 13 13 C 1.38848 * 120.68105 * 359.73566 * 12 11 10 14 14 C 1.37581 * 120.57556 * 359.97438 * 13 12 11 15 15 C 1.40718 * 119.88205 * 0.02562 * 14 13 12 16 16 C 1.40865 * 120.32838 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00113 * 141.91530 * 16 15 14 18 18 C 1.40281 * 120.00342 * 321.91739 * 16 15 14 19 19 N 1.30623 * 119.99645 * 342.86580 * 18 16 15 20 20 Si 1.86801 * 120.00123 * 162.86121 * 18 16 15 21 21 H 1.48500 * 109.46959 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47316 * 299.99933 * 20 18 16 23 23 H 1.48499 * 109.47050 * 60.00182 * 20 18 16 24 24 C 1.39065 * 120.02112 * 359.45258 * 6 5 4 25 25 C 1.38247 * 120.27656 * 0.25804 * 24 6 5 26 26 C 1.37963 * 120.25601 * 0.02562 * 25 24 6 27 27 C 1.50698 * 120.01176 * 180.02562 * 26 25 24 28 28 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47377 * 299.99367 * 1 2 3 30 30 H 1.08997 * 109.47664 * 60.00300 * 1 2 3 31 31 H 1.07991 * 120.13273 * 359.97438 * 5 4 2 32 32 H 0.96991 * 120.00193 * 140.98175 * 7 6 5 33 33 H 1.08003 * 119.95444 * 0.02562 * 11 10 8 34 34 H 1.07998 * 119.66359 * 179.76411 * 12 11 10 35 35 H 1.07994 * 119.70804 * 180.02562 * 13 12 11 36 36 H 1.07997 * 120.06336 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00122 * 354.63876 * 19 18 16 38 38 H 1.08003 * 119.86110 * 180.27298 * 24 6 5 39 39 H 1.08002 * 119.87417 * 180.02562 * 25 24 6 40 40 H 1.08998 * 109.47012 * 95.85953 * 27 26 25 41 41 H 1.09006 * 109.46620 * 215.85854 * 27 26 25 42 42 H 1.09003 * 109.47279 * 335.85670 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5520 -2.4838 -0.1189 6 6 2.2526 -3.6793 -0.1133 7 7 1.5660 -4.8924 -0.2258 8 6 0.3869 -5.0603 0.4052 9 8 -0.1229 -4.1295 0.9992 10 6 -0.2847 -6.3719 0.3752 11 6 0.2372 -7.4107 -0.3916 12 6 -0.3990 -8.6371 -0.4212 13 6 -1.5578 -8.8521 0.3129 14 6 -2.0940 -7.8472 1.0844 15 6 -1.4659 -6.5889 1.1321 16 6 -2.0071 -5.5530 1.9186 17 1 -1.3514 -4.8852 2.4576 18 6 -3.3978 -5.3888 2.0017 19 7 -4.1760 -5.9530 1.1172 20 14 -4.1367 -4.3635 3.3772 21 1 -5.6155 -4.3468 3.2426 22 1 -3.7662 -4.9538 4.6885 23 1 -3.6159 -2.9753 3.2944 24 6 3.6388 -3.6729 -0.0017 25 6 4.3236 -2.4771 0.1094 26 6 3.6370 -1.2804 0.1109 27 6 4.3891 0.0199 0.2317 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.4759 -2.4866 -0.2099 32 1 1.9383 -5.6128 -0.7578 33 1 1.1380 -7.2564 -0.9670 34 1 0.0096 -9.4368 -1.0212 35 1 -2.0418 -9.8169 0.2785 36 1 -2.9955 -8.0236 1.6524 37 1 -3.7904 -6.4201 0.3595 38 1 4.1826 -4.6060 -0.0020 39 1 5.4002 -2.4797 0.1953 40 1 4.5609 0.4339 -0.7619 41 1 3.8040 0.7244 0.8228 42 1 5.3464 -0.1582 0.7216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627757496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:03 Heat of formation + Delta-G solvation = -29.918516 kcal Electronic energy + Delta-G solvation = -26422.454320 eV Core-core repulsion = 22717.945531 eV Total energy + Delta-G solvation = -3704.508789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45862 -39.38142 -38.05803 -36.97622 -34.61167 -33.89795 -32.23855 -31.40814 -30.06048 -29.50334 -29.04590 -26.43670 -25.23090 -23.89254 -22.81111 -21.50162 -21.01511 -19.86616 -19.61214 -18.24623 -17.23830 -16.53203 -15.75127 -15.54398 -15.10793 -15.02274 -14.85071 -14.44175 -14.30298 -14.16115 -13.84839 -13.72596 -13.38039 -13.35090 -12.78673 -12.41108 -12.30207 -12.19897 -12.02785 -11.90907 -11.83265 -11.73704 -11.41527 -11.22093 -11.03986 -10.87335 -10.42863 -10.28954 -9.85219 -9.71589 -9.36304 -9.18075 -8.97454 -8.66889 -8.00279 -7.80461 -7.70831 -7.24862 -4.58951 0.72111 1.42055 2.05774 2.46137 2.60798 3.15258 3.23079 3.35116 3.56426 3.69077 3.96453 3.98311 4.15473 4.53033 4.79916 4.98371 5.06343 5.21750 5.29295 5.39045 5.46389 5.50816 5.54645 5.68980 5.73389 5.78454 5.80606 6.00033 6.05893 6.07215 6.08789 6.25960 6.32723 6.48301 6.56448 6.61700 6.67759 6.82991 7.11356 7.20247 7.32963 7.47593 7.57535 7.59132 7.73948 7.90644 8.04719 8.11514 8.56565 8.71620 9.03596 9.96375 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004195 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.820423 B = 6673.184845 C = 8516.445294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.401 3.599 3 O -0.464 6.464 4 C -0.162 4.162 5 C -0.070 4.070 6 C 0.147 3.853 7 N -0.691 5.691 8 C 0.562 3.438 9 O -0.517 6.517 10 C -0.266 4.266 11 C -0.045 4.045 12 C -0.252 4.252 13 C -0.076 4.076 14 C -0.193 4.193 15 C 0.124 3.876 16 C -0.464 4.464 17 H 0.101 0.899 18 C 0.033 3.967 19 N -0.793 5.793 20 Si 1.069 2.931 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.052 4.052 27 C -0.117 4.117 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.403 0.597 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.298 0.702 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.468 4.398 -3.047 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.281 3.719 3 O -0.341 6.341 4 C -0.163 4.163 5 C -0.091 4.091 6 C 0.052 3.948 7 N -0.338 5.338 8 C 0.358 3.642 9 O -0.394 6.394 10 C -0.271 4.271 11 C -0.064 4.064 12 C -0.271 4.271 13 C -0.095 4.095 14 C -0.212 4.212 15 C 0.119 3.881 16 C -0.491 4.491 17 H 0.118 0.882 18 C -0.189 4.189 19 N -0.416 5.416 20 Si 0.892 3.108 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.053 4.053 27 C -0.173 4.173 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.168 0.832 32 H 0.240 0.760 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.853 6.028 -1.974 10.891 hybrid contribution 1.699 -1.423 -1.097 2.473 sum 10.551 4.605 -3.071 11.915 Atomic orbital electron populations 1.22276 0.93635 1.05815 1.04569 1.22464 0.91708 0.87426 0.70287 1.90443 1.71593 1.34644 1.37456 1.20218 0.93726 0.94600 1.07768 1.21715 1.01455 0.89772 0.96113 1.17674 0.90885 0.86425 0.99828 1.43763 1.23286 1.14013 1.52744 1.18545 0.78974 0.89361 0.77336 1.90705 1.62977 1.42673 1.43019 1.19295 1.05345 0.92422 1.09992 1.20726 0.96580 0.93249 0.95812 1.20284 1.00482 0.97404 1.08964 1.20788 0.95301 0.97496 0.95903 1.21292 1.02685 0.93213 1.04013 1.17483 0.89844 0.92376 0.88393 1.21035 0.94566 1.11626 1.21866 0.88165 1.27221 0.93973 0.96864 1.00842 1.70389 1.40727 1.21901 1.08602 0.83571 0.76469 0.76387 0.74384 1.19857 1.19952 1.19709 1.21200 0.92877 0.98759 1.00899 1.20762 0.99652 0.91159 1.02241 1.20099 0.92438 0.95869 0.96881 1.21032 0.99016 0.94512 1.02787 0.89010 0.88737 0.88981 0.83181 0.76012 0.89026 0.88652 0.88650 0.87463 0.88869 0.85504 0.85463 0.91123 0.89250 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.61 10.19 36.01 0.37 -2.24 16 2 C 0.40 5.84 7.17 -30.68 -0.22 5.62 16 3 O -0.46 -7.31 14.05 5.57 0.08 -7.23 16 4 C -0.16 -2.44 5.87 -105.09 -0.62 -3.06 16 5 C -0.07 -1.15 8.05 -38.89 -0.31 -1.47 16 6 C 0.15 2.34 6.22 -83.77 -0.52 1.81 16 7 N -0.69 -11.57 5.27 -10.88 -0.06 -11.63 16 8 C 0.56 12.01 7.54 -12.53 -0.09 11.91 16 9 O -0.52 -12.39 11.35 5.25 0.06 -12.33 16 10 C -0.27 -5.99 5.92 -104.37 -0.62 -6.61 16 11 C -0.04 -0.87 9.53 -39.22 -0.37 -1.25 16 12 C -0.25 -4.90 10.03 -39.37 -0.39 -5.30 16 13 C -0.08 -1.57 10.01 -39.60 -0.40 -1.97 16 14 C -0.19 -4.53 7.88 -38.89 -0.31 -4.83 16 15 C 0.12 3.08 5.09 -106.54 -0.54 2.54 16 16 C -0.46 -12.01 7.47 -37.82 -0.28 -12.29 16 17 H 0.10 2.70 6.20 -52.48 -0.33 2.38 16 18 C 0.03 0.81 5.08 -17.30 -0.09 0.72 16 19 N -0.79 -20.34 12.70 55.56 0.71 -19.63 16 20 Si 1.07 21.60 29.97 -169.99 -5.09 16.50 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 C -0.12 -1.52 9.96 -39.27 -0.39 -1.91 16 25 C -0.12 -1.46 9.65 -39.68 -0.38 -1.84 16 26 C -0.05 -0.71 5.92 -104.12 -0.62 -1.32 16 27 C -0.12 -1.41 8.77 36.00 0.32 -1.09 16 28 H 0.09 1.26 5.64 -51.92 -0.29 0.97 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.15 2.68 4.43 -52.49 -0.23 2.44 16 32 H 0.40 5.60 6.87 -40.82 -0.28 5.32 16 33 H 0.09 1.43 6.41 -52.48 -0.34 1.09 16 34 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.11 2.57 7.17 -52.49 -0.38 2.20 16 37 H 0.30 7.79 6.58 -40.82 -0.27 7.52 16 38 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.20 5.77 -51.93 -0.30 0.90 16 42 H 0.06 0.55 8.04 -51.93 -0.42 0.14 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -28.67 348.80 -9.11 -37.78 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -4.59 Total: 13.86 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -5.48 Total: -22.58 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.65 Total: -31.26 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.14 Total: -19.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.09 Total: 16.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.67 -9.11 -37.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627757496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.863 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds