Wall clock time and date at job start Tue Mar 31 2020 14:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21260 * 119.99313 * 2 1 4 4 C 1.47179 * 120.00088 * 180.02562 * 2 1 3 5 5 C 1.39765 * 120.13781 * 5.59432 * 4 2 1 6 6 C 1.38570 * 119.74421 * 180.25050 * 5 4 2 7 7 N 1.39843 * 119.99058 * 179.73137 * 6 5 4 8 8 C 1.34779 * 119.99467 * 320.98515 * 7 6 5 9 9 O 1.21626 * 120.00465 * 4.84805 * 8 7 6 10 10 C 1.47388 * 119.99688 * 184.84371 * 8 7 6 11 11 C 1.39257 * 120.28517 * 354.78903 * 10 8 7 12 12 C 1.38194 * 120.08874 * 180.27543 * 11 10 8 13 13 C 1.38848 * 120.68105 * 359.73566 * 12 11 10 14 14 C 1.37581 * 120.57556 * 359.97438 * 13 12 11 15 15 C 1.40718 * 119.88205 * 0.02562 * 14 13 12 16 16 C 1.40865 * 120.32838 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00113 * 141.91530 * 16 15 14 18 18 C 1.40281 * 120.00342 * 321.91739 * 16 15 14 19 19 N 1.30623 * 119.99645 * 342.86580 * 18 16 15 20 20 Si 1.86801 * 120.00123 * 162.86121 * 18 16 15 21 21 H 1.48500 * 109.46959 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47316 * 299.99933 * 20 18 16 23 23 H 1.48499 * 109.47050 * 60.00182 * 20 18 16 24 24 C 1.39065 * 120.02112 * 359.45258 * 6 5 4 25 25 C 1.38247 * 120.27656 * 0.25804 * 24 6 5 26 26 C 1.37963 * 120.25601 * 0.02562 * 25 24 6 27 27 C 1.50698 * 120.01176 * 180.02562 * 26 25 24 28 28 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47377 * 299.99367 * 1 2 3 30 30 H 1.08997 * 109.47664 * 60.00300 * 1 2 3 31 31 H 1.07991 * 120.13273 * 359.97438 * 5 4 2 32 32 H 0.96991 * 120.00193 * 140.98175 * 7 6 5 33 33 H 1.08003 * 119.95444 * 0.02562 * 11 10 8 34 34 H 1.07998 * 119.66359 * 179.76411 * 12 11 10 35 35 H 1.07994 * 119.70804 * 180.02562 * 13 12 11 36 36 H 1.07997 * 120.06336 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00122 * 354.63876 * 19 18 16 38 38 H 1.08003 * 119.86110 * 180.27298 * 24 6 5 39 39 H 1.08002 * 119.87417 * 180.02562 * 25 24 6 40 40 H 1.08998 * 109.47012 * 95.85953 * 27 26 25 41 41 H 1.09006 * 109.46620 * 215.85854 * 27 26 25 42 42 H 1.09003 * 109.47279 * 335.85670 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5520 -2.4838 -0.1189 6 6 2.2526 -3.6793 -0.1133 7 7 1.5660 -4.8924 -0.2258 8 6 0.3869 -5.0603 0.4052 9 8 -0.1229 -4.1295 0.9992 10 6 -0.2847 -6.3719 0.3752 11 6 0.2372 -7.4107 -0.3916 12 6 -0.3990 -8.6371 -0.4212 13 6 -1.5578 -8.8521 0.3129 14 6 -2.0940 -7.8472 1.0844 15 6 -1.4659 -6.5889 1.1321 16 6 -2.0071 -5.5530 1.9186 17 1 -1.3514 -4.8852 2.4576 18 6 -3.3978 -5.3888 2.0017 19 7 -4.1760 -5.9530 1.1172 20 14 -4.1367 -4.3635 3.3772 21 1 -5.6155 -4.3468 3.2426 22 1 -3.7662 -4.9538 4.6885 23 1 -3.6159 -2.9753 3.2944 24 6 3.6388 -3.6729 -0.0017 25 6 4.3236 -2.4771 0.1094 26 6 3.6370 -1.2804 0.1109 27 6 4.3891 0.0199 0.2317 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.4759 -2.4866 -0.2099 32 1 1.9383 -5.6128 -0.7578 33 1 1.1380 -7.2564 -0.9670 34 1 0.0096 -9.4368 -1.0212 35 1 -2.0418 -9.8169 0.2785 36 1 -2.9955 -8.0236 1.6524 37 1 -3.7904 -6.4201 0.3595 38 1 4.1826 -4.6060 -0.0020 39 1 5.4002 -2.4797 0.1953 40 1 4.5609 0.4339 -0.7619 41 1 3.8040 0.7244 0.8228 42 1 5.3464 -0.1582 0.7216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627757496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:02 Heat of formation + Delta-G solvation = -44.399052 kcal Electronic energy + Delta-G solvation = -26423.082243 eV Core-core repulsion = 22717.945531 eV Total energy + Delta-G solvation = -3705.136712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72938 -40.78998 -39.45036 -38.49678 -36.14769 -35.53709 -33.37657 -32.69335 -31.63262 -31.14180 -30.18619 -27.71560 -26.86942 -25.08082 -24.32524 -22.98176 -22.44518 -21.19790 -21.02652 -19.92586 -18.62608 -18.01168 -17.00626 -16.63822 -16.52785 -16.38143 -16.18250 -16.03748 -15.80692 -15.63638 -15.37998 -14.90981 -14.74116 -14.47622 -14.35315 -14.03436 -13.86122 -13.26279 -13.21513 -13.09854 -12.93727 -12.86500 -12.78251 -12.73487 -12.59321 -12.43179 -12.01625 -11.94594 -11.44883 -11.16400 -10.96642 -10.52012 -10.40948 -9.99233 -9.68611 -9.48298 -9.16457 -8.99277 -6.47066 -0.40320 0.17435 0.47079 0.89178 1.32526 1.47178 1.60609 1.75783 2.13829 2.21262 2.30789 2.70227 2.79575 3.05779 3.51979 3.75012 3.93805 3.98448 4.12765 4.20273 4.20435 4.35339 4.43277 4.46717 4.49902 4.50482 4.73854 4.75263 4.82369 4.85365 4.95517 5.01423 5.05727 5.10379 5.25389 5.30459 5.40976 5.46802 5.58847 5.63886 5.68404 5.85529 5.92676 6.00496 6.17668 6.30943 6.44499 6.57945 6.79177 6.88208 7.45275 8.08032 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004195 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.820423 B = 6673.184845 C = 8516.445294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.399 3.601 3 O -0.478 6.478 4 C -0.179 4.179 5 C -0.087 4.087 6 C 0.118 3.882 7 N -0.672 5.672 8 C 0.558 3.442 9 O -0.551 6.551 10 C -0.279 4.279 11 C -0.043 4.043 12 C -0.238 4.238 13 C -0.072 4.072 14 C -0.220 4.220 15 C 0.101 3.899 16 C -0.507 4.507 17 H 0.076 0.924 18 C 0.001 3.999 19 N -0.821 5.821 20 Si 1.110 2.890 21 H -0.267 1.267 22 H -0.261 1.261 23 H -0.270 1.270 24 C -0.101 4.101 25 C -0.111 4.111 26 C -0.054 4.054 27 C -0.114 4.114 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.419 0.581 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.282 0.718 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.928 3.352 -4.147 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.281 3.719 3 O -0.357 6.357 4 C -0.180 4.180 5 C -0.108 4.108 6 C 0.024 3.976 7 N -0.320 5.320 8 C 0.353 3.647 9 O -0.430 6.430 10 C -0.283 4.283 11 C -0.061 4.061 12 C -0.257 4.257 13 C -0.091 4.091 14 C -0.239 4.239 15 C 0.097 3.903 16 C -0.535 4.535 17 H 0.094 0.906 18 C -0.214 4.214 19 N -0.446 5.446 20 Si 0.929 3.071 21 H -0.191 1.191 22 H -0.186 1.186 23 H -0.196 1.196 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.055 4.055 27 C -0.170 4.170 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.258 0.742 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.359 4.961 -3.101 13.673 hybrid contribution 0.931 -1.181 -0.923 1.765 sum 13.290 3.780 -4.024 14.391 Atomic orbital electron populations 1.22265 0.92769 1.05125 1.05844 1.22638 0.92319 0.87250 0.69725 1.90436 1.71925 1.34918 1.38424 1.20326 0.94811 0.94134 1.08745 1.21595 1.00579 0.91044 0.97535 1.17909 0.92220 0.85487 1.01982 1.43353 1.21795 1.14949 1.51854 1.18533 0.80073 0.88658 0.77428 1.90699 1.64303 1.43503 1.44501 1.19705 1.04751 0.94086 1.09801 1.21189 0.97850 0.92226 0.94869 1.20852 0.99079 0.98330 1.07402 1.21195 0.95547 0.97845 0.94496 1.21239 1.02945 0.93854 1.05872 1.17854 0.91102 0.92695 0.88657 1.20914 0.94915 1.12890 1.24783 0.90560 1.28286 0.94257 0.97034 1.01842 1.70495 1.40358 1.24598 1.09145 0.83072 0.76105 0.75211 0.72754 1.19082 1.18573 1.19554 1.21533 0.91355 1.00637 0.98590 1.21207 1.01516 0.89938 1.00248 1.20484 0.91885 0.97505 0.95634 1.21024 0.99743 0.93190 1.03052 0.90638 0.87900 0.87150 0.85661 0.74190 0.84373 0.84382 0.85726 0.89360 0.90553 0.82186 0.81470 0.90610 0.90997 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.39 10.19 71.24 0.73 -4.66 16 2 C 0.40 11.84 7.17 28.04 0.20 12.04 16 3 O -0.48 -15.07 14.05 -2.97 -0.04 -15.11 16 4 C -0.18 -5.39 5.87 -20.17 -0.12 -5.50 16 5 C -0.09 -2.92 8.05 22.72 0.18 -2.74 16 6 C 0.12 3.60 6.22 38.14 0.24 3.84 16 7 N -0.67 -21.57 5.27 -306.57 -1.62 -23.19 16 8 C 0.56 24.22 7.54 86.65 0.65 24.88 16 9 O -0.55 -27.90 11.35 -4.11 -0.05 -27.94 16 10 C -0.28 -12.58 5.92 -19.70 -0.12 -12.70 16 11 C -0.04 -1.54 9.53 22.50 0.21 -1.32 16 12 C -0.24 -8.32 10.03 22.41 0.22 -8.09 16 13 C -0.07 -2.86 10.01 22.26 0.22 -2.64 16 14 C -0.22 -10.60 7.88 22.72 0.18 -10.42 16 15 C 0.10 5.24 5.09 -21.11 -0.11 5.13 16 16 C -0.51 -28.04 7.47 23.41 0.17 -27.86 16 17 H 0.08 4.46 6.20 -2.91 -0.02 4.44 16 18 C 0.00 0.05 5.08 85.37 0.43 0.48 16 19 N -0.82 -44.80 12.70 21.88 0.28 -44.52 16 20 Si 1.11 46.08 29.97 68.60 2.06 48.14 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 C -0.10 -2.27 9.96 22.47 0.22 -2.04 16 25 C -0.11 -2.26 9.65 22.21 0.21 -2.05 16 26 C -0.05 -1.36 5.92 -19.54 -0.12 -1.48 16 27 C -0.11 -2.46 8.77 71.24 0.62 -1.83 16 28 H 0.07 2.27 5.64 -2.38 -0.01 2.26 16 29 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.11 2.45 8.14 -2.39 -0.02 2.44 16 31 H 0.13 4.81 4.43 -2.92 -0.01 4.80 16 32 H 0.42 10.29 6.87 -92.71 -0.64 9.65 16 33 H 0.14 3.60 6.41 -2.91 -0.02 3.58 16 34 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 36 H 0.09 4.50 7.17 -2.91 -0.02 4.48 16 37 H 0.28 15.80 6.58 -92.71 -0.61 15.19 16 38 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 39 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.85 5.77 -2.38 -0.01 1.84 16 42 H 0.08 1.33 8.04 -2.39 -0.02 1.31 16 Total: -1.00 -67.98 348.80 5.29 -62.69 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: 0.60 Total: 36.91 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 4.05 Total: -36.97 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -1.34 Total: -67.70 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.09 Total: -43.06 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.06 Total: 48.14 kcal Total: -67.98 5.29 -62.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627757496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.292 kcal (2) G-P(sol) polarization free energy of solvation -67.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds