Wall clock time and date at job start Tue Mar 31 2020 14:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21296 * 120.00287 * 2 1 4 4 C 1.46830 * 119.99796 * 180.02562 * 2 1 3 5 5 C 1.40082 * 120.10110 * 353.86441 * 4 2 1 6 6 C 1.36569 * 119.90477 * 180.23122 * 5 4 2 7 7 C 1.39282 * 120.09798 * 359.50255 * 6 5 4 8 8 N 1.39173 * 119.90097 * 180.22917 * 7 6 5 9 9 C 1.34786 * 119.99841 * 216.11687 * 8 7 6 10 10 O 1.21613 * 119.99886 * 355.52084 * 9 8 7 11 11 C 1.47372 * 119.99964 * 175.51257 * 9 8 7 12 12 C 1.39262 * 120.28488 * 5.97892 * 11 9 8 13 13 C 1.38199 * 120.08464 * 179.97438 * 12 11 9 14 14 C 1.38840 * 120.68706 * 0.02562 * 13 12 11 15 15 C 1.37592 * 120.57332 * 359.97438 * 14 13 12 16 16 C 1.40714 * 119.88347 * 359.73960 * 15 14 13 17 17 C 1.40867 * 120.33107 * 180.25634 * 16 15 14 18 18 H 1.08000 * 119.99893 * 215.28482 * 17 16 15 19 19 C 1.40277 * 119.99922 * 35.27991 * 17 16 15 20 20 N 1.30629 * 120.00356 * 6.90749 * 19 17 16 21 21 Si 1.86802 * 120.00052 * 186.90845 * 19 17 16 22 22 H 1.48503 * 109.46894 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47661 * 120.00088 * 21 19 17 24 24 H 1.48503 * 109.47130 * 240.00477 * 21 19 17 25 25 C 1.39233 * 120.18876 * 0.49970 * 7 6 5 26 26 C 1.36605 * 120.10196 * 359.75418 * 25 7 6 27 27 C 1.50708 * 120.04868 * 179.97438 * 26 25 7 28 28 H 1.08998 * 109.46823 * 270.00045 * 1 2 3 29 29 H 1.08998 * 109.46891 * 29.99944 * 1 2 3 30 30 H 1.08996 * 109.47139 * 149.99805 * 1 2 3 31 31 H 1.08007 * 120.04709 * 359.95775 * 5 4 2 32 32 H 1.08008 * 119.95314 * 179.74679 * 6 5 4 33 33 H 0.96996 * 120.00526 * 36.12763 * 8 7 6 34 34 H 1.08002 * 119.95682 * 359.97438 * 12 11 9 35 35 H 1.08004 * 119.65396 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.71672 * 179.97438 * 14 13 12 37 37 H 1.07997 * 120.05536 * 179.97438 * 15 14 13 38 38 H 0.96997 * 119.99646 * 179.97438 * 20 19 17 39 39 H 1.08007 * 119.94561 * 179.77160 * 25 7 6 40 40 H 1.09004 * 109.46596 * 262.79401 * 27 26 25 41 41 H 1.08999 * 109.47264 * 22.79069 * 27 26 25 42 42 H 1.09001 * 109.47138 * 142.79133 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2412 -1.2716 -0.0006 5 6 1.5489 -2.4826 0.1284 6 6 2.2361 -3.6627 0.1321 7 6 3.6224 -3.6641 -0.0025 8 7 4.3182 -4.8694 -0.0029 9 6 5.5331 -4.9464 0.5757 10 8 6.0567 -3.9454 1.0259 11 6 6.2268 -6.2437 0.6629 12 6 5.6918 -7.3694 0.0416 13 6 6.3461 -8.5838 0.1256 14 6 7.5389 -8.6990 0.8268 15 6 8.0922 -7.6048 1.4511 16 6 7.4494 -6.3553 1.3760 17 6 8.0103 -5.2277 2.0070 18 1 7.3677 -4.4824 2.4518 19 6 9.4036 -5.0731 2.0578 20 7 10.1768 -5.8999 1.4060 21 14 10.1534 -3.6846 3.0576 22 1 9.0707 -2.8938 3.6961 23 1 11.0377 -4.2518 4.1071 24 1 10.9477 -2.8040 2.1638 25 6 4.3146 -2.4629 -0.1309 26 6 3.6356 -1.2775 -0.1304 27 6 4.3861 0.0221 -0.2690 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 0.4735 -2.4826 0.2292 32 1 1.7035 -4.5966 0.2357 33 1 3.9290 -5.6540 -0.4197 34 1 4.7644 -7.2932 -0.5066 35 1 5.9251 -9.4523 -0.3593 36 1 8.0367 -9.6558 0.8827 37 1 9.0201 -7.7041 1.9946 38 1 11.1402 -5.7926 1.4409 39 1 5.3900 -2.4683 -0.2314 40 1 4.5501 0.4539 0.7184 41 1 5.3471 -0.1627 -0.7489 42 1 3.8038 0.7149 -0.8764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641965475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:05 Heat of formation + Delta-G solvation = -41.524060 kcal Electronic energy + Delta-G solvation = -26110.041177 eV Core-core repulsion = 22405.029133 eV Total energy + Delta-G solvation = -3705.012043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75247 -40.74287 -39.33679 -38.36391 -36.07364 -35.43334 -33.81356 -32.46602 -31.74638 -31.16881 -29.66553 -27.96758 -27.38739 -25.26511 -23.68907 -22.85473 -22.46933 -21.24910 -20.79293 -19.49960 -18.39860 -17.83833 -17.63837 -17.12507 -16.76807 -16.15793 -16.00345 -15.93957 -15.73454 -15.20096 -15.09267 -14.77048 -14.53728 -14.44453 -14.19403 -14.11485 -13.67614 -13.58059 -13.31617 -13.10501 -12.97642 -12.91856 -12.88410 -12.77276 -12.54803 -12.36015 -12.12260 -11.89779 -11.53460 -11.26393 -11.17017 -10.53250 -10.27704 -9.82168 -9.51970 -9.27693 -9.07692 -8.72033 -6.42267 -0.37154 0.44606 0.44900 0.97734 1.30076 1.43080 1.43873 1.45659 2.16719 2.18447 2.25159 2.72322 2.84317 3.23909 3.66629 3.74808 3.85757 4.15847 4.21542 4.30270 4.31402 4.40327 4.53017 4.57223 4.66202 4.68720 4.75705 4.77693 4.82456 4.90936 5.06106 5.12999 5.17285 5.20357 5.26751 5.29327 5.37550 5.48383 5.57518 5.62517 5.77935 5.97558 6.04231 6.07418 6.29344 6.53360 6.65889 6.69145 6.84638 6.92814 7.45331 8.24907 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.003615 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.530118 B = 7744.245103 C = 9466.777789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.393 3.607 3 O -0.501 6.501 4 C -0.219 4.219 5 C -0.029 4.029 6 C -0.166 4.166 7 C 0.184 3.816 8 N -0.669 5.669 9 C 0.557 3.443 10 O -0.551 6.551 11 C -0.280 4.280 12 C -0.053 4.053 13 C -0.231 4.231 14 C -0.090 4.090 15 C -0.174 4.174 16 C 0.117 3.883 17 C -0.454 4.454 18 H 0.079 0.921 19 C 0.034 3.966 20 N -0.820 5.820 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.252 1.252 24 H -0.268 1.268 25 C -0.171 4.171 26 C -0.024 4.024 27 C -0.114 4.114 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.185 0.815 32 H 0.166 0.834 33 H 0.422 0.578 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.290 0.710 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 2.068 -4.142 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.276 3.724 3 O -0.381 6.381 4 C -0.221 4.221 5 C -0.047 4.047 6 C -0.186 4.186 7 C 0.088 3.912 8 N -0.315 5.315 9 C 0.353 3.647 10 O -0.430 6.430 11 C -0.285 4.285 12 C -0.071 4.071 13 C -0.250 4.250 14 C -0.109 4.109 15 C -0.194 4.194 16 C 0.113 3.887 17 C -0.483 4.483 18 H 0.097 0.903 19 C -0.181 4.181 20 N -0.447 5.447 21 Si 0.796 3.204 22 H -0.197 1.197 23 H -0.176 1.176 24 H -0.193 1.193 25 C -0.192 4.192 26 C -0.025 4.025 27 C -0.170 4.170 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.202 0.798 32 H 0.184 0.816 33 H 0.262 0.738 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.320 3.183 -3.861 18.029 hybrid contribution 1.286 0.135 0.247 1.316 sum -16.035 3.318 -3.614 16.768 Atomic orbital electron populations 1.22252 0.89915 1.06358 1.06200 1.22953 0.93536 0.86473 0.69467 1.90490 1.72818 1.35732 1.39102 1.20587 0.92963 0.96745 1.11835 1.21401 1.01780 0.89135 0.92361 1.21032 0.90792 1.01211 1.05576 1.18377 0.92552 0.85609 0.94707 1.43375 1.18646 1.11723 1.57790 1.18664 0.80233 0.89436 0.76411 1.90701 1.65366 1.38560 1.48401 1.19659 1.02971 0.92895 1.12957 1.21097 0.98367 0.91738 0.95910 1.20843 0.98190 0.97938 1.08045 1.21232 0.95823 0.97660 0.96188 1.21329 1.01189 0.92298 1.04552 1.17840 0.90017 0.93172 0.87660 1.20119 0.92096 1.05954 1.30174 0.90284 1.26715 0.97365 0.99292 0.94707 1.69722 1.06588 1.35228 1.33159 0.85269 0.78232 0.78081 0.78813 1.19671 1.17636 1.19280 1.20883 1.00412 0.92179 1.05688 1.19958 0.93902 0.94936 0.93679 1.20988 0.99151 0.94312 1.02549 0.86726 0.89159 0.86791 0.79825 0.81628 0.73791 0.84461 0.84585 0.86084 0.88119 0.89961 0.87468 0.91597 0.92818 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 9.62 71.24 0.69 -1.32 16 2 C 0.39 8.65 7.15 27.94 0.20 8.85 16 3 O -0.50 -14.79 14.09 -3.08 -0.04 -14.83 16 4 C -0.22 -5.44 5.87 -20.14 -0.12 -5.56 16 5 C -0.03 -0.51 9.27 22.33 0.21 -0.30 16 6 C -0.17 -3.55 9.90 22.13 0.22 -3.33 16 7 C 0.18 5.83 6.28 38.47 0.24 6.07 16 8 N -0.67 -22.29 5.25 -306.44 -1.61 -23.90 16 9 C 0.56 25.22 7.54 86.65 0.65 25.88 16 10 O -0.55 -29.48 11.06 -4.07 -0.05 -29.52 16 11 C -0.28 -13.10 5.92 -19.70 -0.12 -13.21 16 12 C -0.05 -1.96 9.52 22.51 0.21 -1.74 16 13 C -0.23 -8.44 10.03 22.40 0.22 -8.21 16 14 C -0.09 -3.75 10.01 22.26 0.22 -3.53 16 15 C -0.17 -8.75 8.61 22.72 0.20 -8.56 16 16 C 0.12 6.29 5.50 -21.11 -0.12 6.18 16 17 C -0.45 -25.93 7.64 23.41 0.18 -25.75 16 18 H 0.08 4.78 5.96 -2.91 -0.02 4.76 16 19 C 0.03 1.82 5.29 85.37 0.45 2.27 16 20 N -0.82 -43.58 11.10 21.88 0.24 -43.33 16 21 Si 0.97 42.18 29.57 68.60 2.03 44.21 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 C -0.17 -6.32 8.23 22.13 0.18 -6.14 16 26 C -0.02 -0.77 5.89 -19.80 -0.12 -0.89 16 27 C -0.11 -3.65 8.70 71.24 0.62 -3.03 16 28 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 0.55 6.72 -2.39 -0.02 0.53 16 31 H 0.18 1.35 6.52 -2.91 -0.02 1.33 16 32 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.42 10.59 6.87 -92.71 -0.64 9.96 16 34 H 0.14 3.71 6.42 -2.91 -0.02 3.69 16 35 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.10 5.32 6.60 -2.91 -0.02 5.30 16 38 H 0.29 13.88 8.29 -92.71 -0.77 13.11 16 39 H 0.11 4.78 6.24 -2.91 -0.02 4.76 16 40 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 41 H 0.05 1.71 8.02 -2.39 -0.02 1.69 16 42 H 0.09 2.79 5.90 -2.39 -0.01 2.78 16 Total: -1.00 -74.00 349.53 5.05 -68.96 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.44 Total: 30.76 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 4.03 Total: -32.33 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -1.37 Total: -67.24 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.09 Total: -44.36 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -74.00 5.05 -68.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641965475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.431 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds