Wall clock time and date at job start Tue Mar 31 2020 14:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00148 * 2 1 4 4 C 1.53001 * 109.47159 * 275.00491 * 3 2 1 5 5 H 1.09000 * 115.54960 * 330.72101 * 4 3 2 6 6 C 1.52995 * 117.49885 * 116.38902 * 4 3 2 7 7 C 1.53000 * 60.00182 * 107.48904 * 6 4 3 8 8 C 1.52993 * 117.49992 * 252.51175 * 7 6 4 9 9 C 1.52995 * 117.49843 * 107.48446 * 7 6 4 10 10 S 1.65606 * 120.00282 * 180.02562 * 2 1 3 11 11 O 1.42104 * 106.39428 * 336.45772 * 10 2 1 12 12 O 1.42094 * 106.40229 * 203.53663 * 10 2 1 13 13 C 1.76200 * 107.21754 * 89.99438 * 10 2 1 14 14 C 1.38634 * 119.74882 * 270.25475 * 13 10 2 15 15 C 1.37623 * 120.24461 * 180.26258 * 14 13 10 16 16 C 1.40718 * 119.74579 * 359.46564 * 15 14 13 17 17 C 1.41389 * 120.24328 * 180.30009 * 16 15 14 18 18 H 1.08001 * 120.00162 * 204.38017 * 17 16 15 19 19 C 1.39949 * 120.00340 * 24.37755 * 17 16 15 20 20 N 1.30825 * 119.99385 * 17.86451 * 19 17 16 21 21 Si 1.86795 * 120.00110 * 197.86331 * 19 17 16 22 22 H 1.48497 * 109.47502 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47155 * 120.00227 * 21 19 17 24 24 H 1.48506 * 109.47081 * 239.99913 * 21 19 17 25 25 C 1.40710 * 119.50993 * 0.28058 * 16 15 14 26 26 C 1.37619 * 119.74773 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.46543 * 269.99941 * 1 2 3 28 28 H 1.09002 * 109.47148 * 29.99424 * 1 2 3 29 29 H 1.08993 * 109.46954 * 149.99676 * 1 2 3 30 30 H 1.09004 * 109.46800 * 35.00163 * 3 2 1 31 31 H 1.08996 * 109.47479 * 155.00531 * 3 2 1 32 32 H 1.09007 * 117.50030 * 214.97776 * 6 4 3 33 33 H 1.08999 * 117.50180 * 359.97438 * 6 4 3 34 34 H 1.08999 * 109.47451 * 128.61952 * 8 7 6 35 35 H 1.09006 * 109.47333 * 248.62100 * 8 7 6 36 36 H 1.09003 * 109.47195 * 8.61728 * 8 7 6 37 37 H 1.09003 * 109.47769 * 351.38542 * 9 7 6 38 38 H 1.09006 * 109.47107 * 111.38382 * 9 7 6 39 39 H 1.09000 * 109.47751 * 231.37898 * 9 7 6 40 40 H 1.08000 * 119.87824 * 0.02562 * 14 13 10 41 41 H 1.08000 * 120.12792 * 179.74481 * 15 14 13 42 42 H 0.96998 * 119.99364 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.12757 * 180.02562 * 25 16 15 44 44 H 1.08003 * 119.87857 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 1 2.3774 1.0009 -2.2053 6 6 1.6618 3.0956 -1.7941 7 6 3.1847 3.0315 -1.6619 8 6 3.8153 3.6887 -0.4326 9 6 4.0094 3.1092 -2.9482 10 16 2.2931 -1.4341 -0.0006 11 8 1.4113 -2.4067 0.5434 12 8 3.5760 -1.1570 0.5438 13 6 2.5537 -1.8851 -1.6839 14 6 1.6106 -2.6586 -2.3428 15 6 1.8064 -3.0213 -3.6558 16 6 2.9638 -2.5945 -4.3329 17 6 3.1726 -2.9557 -5.6838 18 1 4.1745 -2.9871 -6.0858 19 6 2.0809 -3.2725 -6.5002 20 7 0.8742 -2.9097 -6.1485 21 14 2.3469 -4.2132 -8.0919 22 1 3.7934 -4.5042 -8.2592 23 1 1.5880 -5.4888 -8.0457 24 1 1.8705 -3.3950 -9.2360 25 6 3.9117 -1.8053 -3.6556 26 6 3.6977 -1.4590 -2.3410 27 1 -0.3632 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6502 2.0043 0.5895 31 1 3.1858 1.1177 0.4342 32 1 1.2474 3.1933 -2.7976 33 1 1.1088 3.6059 -1.0055 34 1 4.4832 2.9794 0.0562 35 1 4.3815 4.5677 -0.7408 36 1 3.0306 3.9873 0.2625 37 1 3.3448 3.0492 -3.8102 38 1 4.5538 4.0532 -2.9743 39 1 4.7171 2.2808 -2.9768 40 1 0.7207 -2.9810 -1.8226 41 1 1.0724 -3.6274 -4.1661 42 1 0.1176 -3.1289 -6.7145 43 1 4.8033 -1.4719 -4.1657 44 1 4.4236 -0.8530 -1.8192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645946988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:34 Heat of formation + Delta-G solvation = -46.596563 kcal Electronic energy + Delta-G solvation = -26049.388087 eV Core-core repulsion = 22479.600035 eV Total energy + Delta-G solvation = -3569.788052 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.78951 -37.56593 -36.52191 -35.40984 -35.08675 -34.04036 -30.25427 -29.62829 -29.44466 -27.88890 -27.07834 -25.81648 -24.36960 -21.51204 -21.21078 -21.00738 -18.63779 -18.30130 -17.61972 -17.11479 -16.49958 -15.99567 -15.49042 -14.77058 -14.62496 -14.13650 -13.90652 -13.62063 -13.45496 -13.30698 -13.14832 -12.93457 -12.47246 -12.38899 -12.29131 -12.17854 -12.02662 -11.90297 -11.76631 -11.45056 -11.39331 -11.28308 -11.19959 -11.19661 -11.10337 -10.99194 -10.89965 -10.39609 -9.79377 -9.73093 -9.59249 -9.50712 -9.41476 -8.61299 -7.94523 -7.69293 -7.15003 -4.79958 1.23299 2.25516 2.86859 2.89625 2.93057 2.94810 3.58532 3.66008 3.85142 4.23910 4.55380 4.73077 4.82233 4.92371 5.07151 5.16223 5.21567 5.40491 5.55586 5.58056 5.68801 5.73558 5.75850 5.85372 5.92464 5.97638 5.99077 6.02816 6.03478 6.07818 6.12564 6.21921 6.32688 6.40123 6.51347 6.67686 6.69662 6.85384 7.02861 7.06448 7.34411 7.43001 7.64116 7.77393 7.97074 8.32185 8.51577 8.65312 9.76435 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.004497 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.428226 B = 6224.663532 C = 7370.392744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.005 6.005 3 C 0.152 3.848 4 C -0.166 4.166 5 H 0.119 0.881 6 C -0.171 4.171 7 C -0.124 4.124 8 C -0.117 4.117 9 C -0.115 4.115 10 S 2.690 3.310 11 O -0.982 6.982 12 O -0.983 6.983 13 C -0.784 4.784 14 C -0.016 4.016 15 C -0.183 4.183 16 C 0.140 3.860 17 C -0.436 4.436 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.766 5.766 21 Si 0.915 3.085 22 H -0.256 1.256 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.238 4.238 26 C 0.004 3.996 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.288 0.712 43 H 0.099 0.901 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 9.922 4.743 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.840 5.840 3 C 0.026 3.974 4 C -0.186 4.186 5 H 0.137 0.863 6 C -0.208 4.208 7 C -0.125 4.125 8 C -0.174 4.174 9 C -0.173 4.173 10 S 2.789 3.211 11 O -0.973 6.973 12 O -0.974 6.974 13 C -0.880 4.880 14 C -0.036 4.036 15 C -0.203 4.203 16 C 0.136 3.864 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.389 5.389 21 Si 0.739 3.261 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.259 4.259 26 C -0.016 4.016 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.729 9.510 5.495 11.007 hybrid contribution -0.225 -0.243 -1.713 1.745 sum -0.954 9.266 3.782 10.054 Atomic orbital electron populations 1.21343 0.78966 1.03099 1.01175 1.57611 1.14765 1.21324 1.90259 1.20838 0.97211 0.85125 0.94213 1.23165 1.04160 0.91932 0.99325 0.86348 1.23271 0.94219 1.00782 1.02496 1.21541 0.92424 1.01142 0.97412 1.21364 1.00432 0.99985 0.95634 1.21351 0.99474 1.01700 0.94736 1.01429 0.72369 0.71818 0.75458 1.93478 1.66669 1.58388 1.78754 1.93457 1.40363 1.84762 1.78827 1.29219 1.08170 1.26586 1.24072 1.20243 0.95098 0.93685 0.94566 1.21327 1.00742 1.05120 0.93107 1.17842 0.90432 0.85634 0.92463 1.19965 0.94673 1.36885 0.94799 0.89456 1.26126 0.94425 0.93561 1.00800 1.69827 1.00303 1.31787 1.36968 0.86128 0.80420 0.79711 0.79889 1.17970 1.19224 1.19546 1.21029 1.02479 1.07091 0.95262 1.20134 0.93147 0.94337 0.93974 0.93149 0.91373 0.91079 0.90706 0.88805 0.89042 0.89155 0.91850 0.92324 0.92575 0.92402 0.92502 0.91839 0.88066 0.86047 0.90084 0.88305 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.36 10.31 59.85 0.62 1.98 16 2 N -1.00 -16.00 3.18 -121.76 -0.39 -16.38 16 3 C 0.15 2.11 5.02 -4.04 -0.02 2.09 16 4 C -0.17 -2.34 5.73 -90.62 -0.52 -2.86 16 5 H 0.12 2.02 7.68 -51.93 -0.40 1.62 16 6 C -0.17 -2.03 9.47 -26.73 -0.25 -2.28 16 7 C -0.12 -1.51 2.70 -154.51 -0.42 -1.93 16 8 C -0.12 -1.20 8.86 37.15 0.33 -0.87 16 9 C -0.12 -1.40 9.85 37.16 0.37 -1.03 16 10 S 2.69 53.36 5.64 -107.50 -0.61 52.75 16 11 O -0.98 -21.43 16.34 -57.17 -0.93 -22.36 16 12 O -0.98 -20.93 15.81 -57.17 -0.90 -21.84 16 13 C -0.78 -17.29 6.00 -39.29 -0.24 -17.52 16 14 C -0.02 -0.36 9.49 -39.66 -0.38 -0.74 16 15 C -0.18 -4.55 8.70 -38.87 -0.34 -4.89 16 16 C 0.14 3.52 5.57 -106.83 -0.60 2.92 16 17 C -0.44 -10.64 9.05 -37.74 -0.34 -10.98 16 18 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 19 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 20 N -0.77 -18.07 10.95 55.55 0.61 -17.46 16 21 Si 0.92 16.97 29.59 -169.99 -5.03 11.94 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 24 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 25 C -0.24 -5.56 9.80 -38.87 -0.38 -5.94 16 26 C 0.00 0.09 9.03 -39.66 -0.36 -0.27 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.07 1.02 7.79 -51.93 -0.40 0.62 16 30 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 31 H 0.09 1.36 6.54 -51.93 -0.34 1.02 16 32 H 0.09 1.10 8.05 -51.92 -0.42 0.69 16 33 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 35 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 36 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 37 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 38 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 2.18 7.60 -52.49 -0.40 1.78 16 41 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 42 H 0.29 6.07 8.30 -40.82 -0.34 5.74 16 43 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.10 2.08 7.60 -52.48 -0.40 1.68 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -28.68 372.86 -11.04 -39.71 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.79 Total: 8.76 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: -2.61 Total: -40.74 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.22 Total: -33.85 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.84 Total: -44.20 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Atomic # 16 Polarization: 53.36 SS G_CDS: -0.61 Total: 52.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.68 -11.04 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645946988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.882 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds