Wall clock time and date at job start Tue Mar 31 2020 14:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00305 * 2 1 4 4 C 1.52992 * 109.47409 * 275.00277 * 3 2 1 5 5 H 1.08994 * 115.55434 * 29.32280 * 4 3 2 6 6 C 1.53004 * 117.49755 * 243.61797 * 4 3 2 7 7 C 1.52991 * 60.00246 * 252.50991 * 6 4 3 8 8 C 1.53000 * 117.50112 * 252.51330 * 7 6 4 9 9 C 1.53000 * 117.49952 * 107.48720 * 7 6 4 10 10 S 1.65610 * 119.99802 * 180.02562 * 2 1 3 11 11 O 1.42099 * 106.39634 * 156.46171 * 10 2 1 12 12 O 1.42098 * 106.39988 * 23.54446 * 10 2 1 13 13 C 1.76195 * 107.21759 * 270.00070 * 10 2 1 14 14 C 1.38637 * 119.74835 * 90.00074 * 13 10 2 15 15 C 1.37616 * 120.24767 * 180.02562 * 14 13 10 16 16 C 1.40717 * 119.74725 * 359.97438 * 15 14 13 17 17 C 1.41392 * 120.24251 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99499 * 155.58147 * 17 16 15 19 19 C 1.39936 * 120.00495 * 335.31090 * 17 16 15 20 20 N 1.30828 * 119.99619 * 342.56815 * 19 17 16 21 21 Si 1.86800 * 120.00297 * 162.56923 * 19 17 16 22 22 H 1.48500 * 109.47096 * 59.99987 * 21 19 17 23 23 H 1.48502 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47209 * 299.99504 * 21 19 17 25 25 C 1.40715 * 119.50976 * 0.28023 * 16 15 14 26 26 C 1.37626 * 119.74397 * 359.46209 * 25 16 15 27 27 H 1.08988 * 109.47470 * 269.99734 * 1 2 3 28 28 H 1.09003 * 109.46964 * 29.99967 * 1 2 3 29 29 H 1.09005 * 109.46776 * 149.99639 * 1 2 3 30 30 H 1.09008 * 109.46869 * 35.00043 * 3 2 1 31 31 H 1.08997 * 109.47317 * 154.99383 * 3 2 1 32 32 H 1.09000 * 117.49894 * 0.02562 * 6 4 3 33 33 H 1.09004 * 117.49963 * 145.01770 * 6 4 3 34 34 H 1.08999 * 109.47680 * 128.61703 * 8 7 6 35 35 H 1.08999 * 109.46903 * 248.62348 * 8 7 6 36 36 H 1.09004 * 109.47195 * 8.61591 * 8 7 6 37 37 H 1.08991 * 109.47395 * 351.38100 * 9 7 6 38 38 H 1.09001 * 109.46813 * 111.38485 * 9 7 6 39 39 H 1.08998 * 109.47221 * 231.37504 * 9 7 6 40 40 H 1.08001 * 119.87712 * 0.02562 * 14 13 10 41 41 H 1.08007 * 120.12366 * 180.02562 * 15 14 13 42 42 H 0.97006 * 119.99935 * 180.02562 * 20 19 17 43 43 H 1.07995 * 120.12530 * 179.70014 * 25 16 15 44 44 H 1.08001 * 119.87419 * 180.27686 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7733 -1.4369 5 1 1.5474 1.4807 -2.1212 6 6 3.7595 1.8842 -2.0061 7 6 2.9806 3.1494 -1.6411 8 6 2.4510 4.0093 -2.7905 9 6 3.4224 3.9155 -0.3927 10 16 2.2930 -1.4343 -0.0006 11 8 3.5759 -1.1565 -0.5449 12 8 1.4113 -2.4063 -0.5456 13 6 2.5537 -1.8867 1.6822 14 6 1.6131 -2.6651 2.3389 15 6 1.8061 -3.0241 3.6533 16 6 2.9638 -2.5983 4.3306 17 6 3.1729 -2.9614 5.6810 18 1 4.1750 -2.9941 6.0823 19 6 2.0811 -3.2730 6.4990 20 7 0.8746 -2.9110 6.1455 21 14 2.3463 -4.2056 8.0956 22 1 3.2468 -3.4246 8.9813 23 1 1.0405 -4.4085 8.7731 24 1 2.9624 -5.5245 7.8021 25 6 3.9090 -1.8040 3.6556 26 6 3.6979 -1.4615 2.3394 27 1 -0.3634 0.0000 1.0275 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5895 31 1 3.1857 1.1176 0.4344 32 1 4.5868 1.5973 -1.3570 33 1 3.8949 1.6644 -3.0652 34 1 1.3890 4.2028 -2.6402 35 1 2.9927 4.9548 -2.8162 36 1 2.5944 3.4828 -3.7341 37 1 4.1668 3.3311 0.1478 38 1 3.8550 4.8717 -0.6873 39 1 2.5601 4.0899 0.2508 40 1 0.7256 -2.9911 1.8169 41 1 1.0722 -3.6309 4.1629 42 1 0.1178 -3.1266 6.7127 43 1 4.7986 -1.4677 4.1672 44 1 4.4242 -0.8558 1.8180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645946990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:37 Heat of formation + Delta-G solvation = -46.228653 kcal Electronic energy + Delta-G solvation = -25468.690842 eV Core-core repulsion = 21898.918743 eV Total energy + Delta-G solvation = -3569.772099 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.86165 -37.56664 -36.48800 -35.43018 -35.05683 -34.03451 -30.25076 -29.74597 -29.46571 -27.91873 -27.06214 -25.81484 -24.58476 -21.48451 -21.13538 -21.00068 -18.77270 -18.34252 -17.62427 -17.15658 -16.52500 -15.80823 -15.48983 -14.86635 -14.64889 -14.14097 -14.10016 -13.69373 -13.47241 -13.32797 -13.15206 -12.95060 -12.49318 -12.40712 -12.36018 -12.19209 -12.12634 -11.91492 -11.78378 -11.43420 -11.39469 -11.27998 -11.22402 -11.21691 -11.13822 -11.07706 -10.89191 -10.42236 -9.82205 -9.72424 -9.58335 -9.55353 -9.50132 -8.61410 -7.94618 -7.70163 -7.14018 -4.80019 1.24483 2.26522 2.87722 2.89141 2.91898 2.94917 3.54098 3.66180 3.83337 4.25150 4.54632 4.68198 4.73837 4.85699 5.00785 5.11553 5.22533 5.39786 5.43037 5.49802 5.52331 5.68623 5.72430 5.80286 5.85652 5.88149 5.94430 5.98885 6.02243 6.04124 6.05540 6.12283 6.24637 6.31073 6.41629 6.67152 6.69148 6.84447 7.02682 7.06415 7.34072 7.42579 7.63802 7.76969 7.96954 8.32011 8.51349 8.65294 9.77396 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.003219 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.505178 B = 8696.526153 C = 9095.091464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.005 6.005 3 C 0.161 3.839 4 C -0.164 4.164 5 H 0.104 0.896 6 C -0.159 4.159 7 C -0.132 4.132 8 C -0.112 4.112 9 C -0.118 4.118 10 S 2.691 3.309 11 O -0.977 6.977 12 O -0.984 6.984 13 C -0.787 4.787 14 C -0.016 4.016 15 C -0.182 4.182 16 C 0.140 3.860 17 C -0.437 4.437 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.767 5.767 21 Si 0.918 3.082 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.239 4.239 26 C 0.000 4.000 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.289 0.711 43 H 0.100 0.900 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 10.084 -7.995 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.840 5.840 3 C 0.035 3.965 4 C -0.184 4.184 5 H 0.122 0.878 6 C -0.196 4.196 7 C -0.132 4.132 8 C -0.170 4.170 9 C -0.175 4.175 10 S 2.791 3.209 11 O -0.968 6.968 12 O -0.975 6.975 13 C -0.883 4.883 14 C -0.036 4.036 15 C -0.203 4.203 16 C 0.136 3.864 17 C -0.464 4.464 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.389 5.389 21 Si 0.741 3.259 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.259 4.259 26 C -0.020 4.020 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.911 9.671 -8.706 13.044 hybrid contribution -0.139 -0.287 1.523 1.556 sum -1.051 9.384 -7.183 11.864 Atomic orbital electron populations 1.21475 0.79145 1.03188 1.01975 1.57613 1.14738 1.21304 1.90331 1.20694 0.96693 0.85184 0.93940 1.22971 0.97429 0.99201 0.98801 0.87761 1.23298 0.95038 0.99618 1.01655 1.21618 1.04376 0.89152 0.98092 1.21332 1.00598 0.98873 0.96152 1.21363 1.01069 0.99544 0.95502 1.01403 0.72479 0.71789 0.75279 1.93476 1.40135 1.84608 1.78536 1.93459 1.66801 1.58504 1.78734 1.29278 1.08157 1.26458 1.24364 1.20255 0.95146 0.93666 0.94574 1.21340 1.00747 1.05136 0.93055 1.17842 0.90436 0.85659 0.92470 1.19904 0.94654 1.37067 0.94775 0.89489 1.26127 0.94422 0.93540 1.00870 1.69812 1.00309 1.31703 1.37125 0.86191 0.78968 0.80780 0.79976 1.18576 1.19906 1.18348 1.21054 1.02633 1.07020 0.95213 1.20154 0.93194 0.94578 0.94040 0.92714 0.91465 0.90320 0.90412 0.89977 0.88071 0.89162 0.92450 0.92293 0.92638 0.92059 0.92318 0.92159 0.87974 0.85972 0.89955 0.88216 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.68 59.85 0.64 1.83 16 2 N -1.00 -15.99 3.18 -121.76 -0.39 -16.38 16 3 C 0.16 2.23 4.69 -4.05 -0.02 2.21 16 4 C -0.16 -2.07 5.73 -90.62 -0.52 -2.59 16 5 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 6 C -0.16 -1.99 9.47 -26.73 -0.25 -2.24 16 7 C -0.13 -1.40 2.70 -154.51 -0.42 -1.82 16 8 C -0.11 -1.00 9.85 37.16 0.37 -0.63 16 9 C -0.12 -1.14 8.86 37.16 0.33 -0.81 16 10 S 2.69 53.27 5.64 -107.50 -0.61 52.66 16 11 O -0.98 -20.42 16.23 -57.17 -0.93 -21.35 16 12 O -0.98 -21.47 15.86 -57.17 -0.91 -22.37 16 13 C -0.79 -17.59 6.00 -39.29 -0.24 -17.83 16 14 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 15 C -0.18 -4.60 8.70 -38.87 -0.34 -4.94 16 16 C 0.14 3.55 5.57 -106.83 -0.60 2.96 16 17 C -0.44 -10.73 9.05 -37.75 -0.34 -11.07 16 18 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 19 C 0.07 1.67 5.15 -17.34 -0.09 1.58 16 20 N -0.77 -18.19 10.95 55.55 0.61 -17.58 16 21 Si 0.92 17.02 29.59 -169.99 -5.03 11.99 16 22 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 23 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 24 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 25 C -0.24 -5.66 9.80 -38.87 -0.38 -6.04 16 26 C 0.00 0.01 9.49 -39.66 -0.38 -0.37 16 27 H 0.05 0.73 8.14 -51.94 -0.42 0.30 16 28 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.08 1.10 7.02 -51.93 -0.36 0.74 16 30 H 0.08 0.94 7.73 -51.92 -0.40 0.54 16 31 H 0.08 1.20 7.34 -51.93 -0.38 0.81 16 32 H 0.10 1.35 7.94 -51.93 -0.41 0.94 16 33 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 36 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 37 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 38 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 39 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 40 H 0.10 2.23 7.60 -52.49 -0.40 1.83 16 41 H 0.12 3.11 6.16 -52.48 -0.32 2.78 16 42 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 44 H 0.10 2.06 7.60 -52.49 -0.40 1.66 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -28.99 373.67 -11.04 -40.02 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.81 Total: 7.88 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: -2.61 Total: -40.51 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.22 Total: -33.95 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.83 Total: -43.72 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 53.27 SS G_CDS: -0.61 Total: 52.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.99 -11.04 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645946990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.207 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds