Wall clock time and date at job start Tue Mar 31 2020 14:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00305 * 2 1 4 4 C 1.52992 * 109.47409 * 275.00277 * 3 2 1 5 5 H 1.08994 * 115.55434 * 29.32280 * 4 3 2 6 6 C 1.53004 * 117.49755 * 243.61797 * 4 3 2 7 7 C 1.52991 * 60.00246 * 252.50991 * 6 4 3 8 8 C 1.53000 * 117.50112 * 252.51330 * 7 6 4 9 9 C 1.53000 * 117.49952 * 107.48720 * 7 6 4 10 10 S 1.65610 * 119.99802 * 180.02562 * 2 1 3 11 11 O 1.42099 * 106.39634 * 156.46171 * 10 2 1 12 12 O 1.42098 * 106.39988 * 23.54446 * 10 2 1 13 13 C 1.76195 * 107.21759 * 270.00070 * 10 2 1 14 14 C 1.38637 * 119.74835 * 90.00074 * 13 10 2 15 15 C 1.37616 * 120.24767 * 180.02562 * 14 13 10 16 16 C 1.40717 * 119.74725 * 359.97438 * 15 14 13 17 17 C 1.41392 * 120.24251 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99499 * 155.58147 * 17 16 15 19 19 C 1.39936 * 120.00495 * 335.31090 * 17 16 15 20 20 N 1.30828 * 119.99619 * 342.56815 * 19 17 16 21 21 Si 1.86800 * 120.00297 * 162.56923 * 19 17 16 22 22 H 1.48500 * 109.47096 * 59.99987 * 21 19 17 23 23 H 1.48502 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47209 * 299.99504 * 21 19 17 25 25 C 1.40715 * 119.50976 * 0.28023 * 16 15 14 26 26 C 1.37626 * 119.74397 * 359.46209 * 25 16 15 27 27 H 1.08988 * 109.47470 * 269.99734 * 1 2 3 28 28 H 1.09003 * 109.46964 * 29.99967 * 1 2 3 29 29 H 1.09005 * 109.46776 * 149.99639 * 1 2 3 30 30 H 1.09008 * 109.46869 * 35.00043 * 3 2 1 31 31 H 1.08997 * 109.47317 * 154.99383 * 3 2 1 32 32 H 1.09000 * 117.49894 * 0.02562 * 6 4 3 33 33 H 1.09004 * 117.49963 * 145.01770 * 6 4 3 34 34 H 1.08999 * 109.47680 * 128.61703 * 8 7 6 35 35 H 1.08999 * 109.46903 * 248.62348 * 8 7 6 36 36 H 1.09004 * 109.47195 * 8.61591 * 8 7 6 37 37 H 1.08991 * 109.47395 * 351.38100 * 9 7 6 38 38 H 1.09001 * 109.46813 * 111.38485 * 9 7 6 39 39 H 1.08998 * 109.47221 * 231.37504 * 9 7 6 40 40 H 1.08001 * 119.87712 * 0.02562 * 14 13 10 41 41 H 1.08007 * 120.12366 * 180.02562 * 15 14 13 42 42 H 0.97006 * 119.99935 * 180.02562 * 20 19 17 43 43 H 1.07995 * 120.12530 * 179.70014 * 25 16 15 44 44 H 1.08001 * 119.87419 * 180.27686 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7733 -1.4369 5 1 1.5474 1.4807 -2.1212 6 6 3.7595 1.8842 -2.0061 7 6 2.9806 3.1494 -1.6411 8 6 2.4510 4.0093 -2.7905 9 6 3.4224 3.9155 -0.3927 10 16 2.2930 -1.4343 -0.0006 11 8 3.5759 -1.1565 -0.5449 12 8 1.4113 -2.4063 -0.5456 13 6 2.5537 -1.8867 1.6822 14 6 1.6131 -2.6651 2.3389 15 6 1.8061 -3.0241 3.6533 16 6 2.9638 -2.5983 4.3306 17 6 3.1729 -2.9614 5.6810 18 1 4.1750 -2.9941 6.0823 19 6 2.0811 -3.2730 6.4990 20 7 0.8746 -2.9110 6.1455 21 14 2.3463 -4.2056 8.0956 22 1 3.2468 -3.4246 8.9813 23 1 1.0405 -4.4085 8.7731 24 1 2.9624 -5.5245 7.8021 25 6 3.9090 -1.8040 3.6556 26 6 3.6979 -1.4615 2.3394 27 1 -0.3634 0.0000 1.0275 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5895 31 1 3.1857 1.1176 0.4344 32 1 4.5868 1.5973 -1.3570 33 1 3.8949 1.6644 -3.0652 34 1 1.3890 4.2028 -2.6402 35 1 2.9927 4.9548 -2.8162 36 1 2.5944 3.4828 -3.7341 37 1 4.1668 3.3311 0.1478 38 1 3.8550 4.8717 -0.6873 39 1 2.5601 4.0899 0.2508 40 1 0.7256 -2.9911 1.8169 41 1 1.0722 -3.6309 4.1629 42 1 0.1178 -3.1266 6.7127 43 1 4.7986 -1.4677 4.1672 44 1 4.4242 -0.8558 1.8180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645946990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:36 Heat of formation + Delta-G solvation = -61.528886 kcal Electronic energy + Delta-G solvation = -25469.354310 eV Core-core repulsion = 21898.918743 eV Total energy + Delta-G solvation = -3570.435566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.80526 -39.39008 -38.15183 -36.78008 -36.56398 -35.80893 -32.07317 -31.31090 -30.63097 -28.77304 -27.96470 -27.62369 -25.76642 -23.28448 -22.95932 -22.03676 -19.91142 -19.58576 -19.43604 -18.64630 -18.16432 -17.25792 -17.07040 -15.98720 -15.88577 -15.75545 -15.36869 -15.03888 -14.95039 -14.53917 -14.35425 -14.13347 -14.06795 -13.96578 -13.59606 -13.42523 -13.24705 -13.17551 -13.04798 -12.91444 -12.89369 -12.87631 -12.60101 -12.59085 -12.43487 -12.36571 -12.01180 -11.95102 -11.56830 -11.34055 -11.22755 -10.67339 -10.50769 -9.89800 -9.75242 -9.56787 -8.87616 -6.65761 -0.32944 0.47752 1.03887 1.35320 1.43975 1.49485 2.10693 2.16282 2.51679 2.82979 2.96258 3.50260 3.51509 3.76214 3.80849 3.98160 4.10357 4.25559 4.27495 4.29707 4.37719 4.58716 4.63320 4.76063 4.84832 4.85437 4.91445 4.93431 4.97799 5.02195 5.05692 5.08717 5.11629 5.14691 5.17613 5.22883 5.34016 5.35410 5.50786 5.54171 5.57648 5.69894 5.79848 5.92511 6.14108 6.47730 6.67120 6.79823 8.07336 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.003219 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.505178 B = 8696.526153 C = 9095.091464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.999 5.999 3 C 0.154 3.846 4 C -0.175 4.175 5 H 0.108 0.892 6 C -0.178 4.178 7 C -0.110 4.110 8 C -0.112 4.112 9 C -0.122 4.122 10 S 2.716 3.284 11 O -0.988 6.988 12 O -1.004 7.004 13 C -0.798 4.798 14 C -0.022 4.022 15 C -0.207 4.207 16 C 0.111 3.889 17 C -0.467 4.467 18 H 0.092 0.908 19 C 0.035 3.965 20 N -0.796 5.796 21 Si 0.991 3.009 22 H -0.254 1.254 23 H -0.263 1.263 24 H -0.259 1.259 25 C -0.256 4.256 26 C -0.002 4.002 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.299 0.701 43 H 0.112 0.888 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 11.636 -8.159 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.836 5.836 3 C 0.029 3.971 4 C -0.195 4.195 5 H 0.126 0.874 6 C -0.215 4.215 7 C -0.111 4.111 8 C -0.169 4.169 9 C -0.179 4.179 10 S 2.812 3.188 11 O -0.979 6.979 12 O -0.995 6.995 13 C -0.891 4.891 14 C -0.042 4.042 15 C -0.227 4.227 16 C 0.108 3.892 17 C -0.494 4.494 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.418 5.418 21 Si 0.811 3.189 22 H -0.178 1.178 23 H -0.187 1.187 24 H -0.183 1.183 25 C -0.277 4.277 26 C -0.022 4.022 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.130 0.870 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.309 11.219 -8.850 14.350 hybrid contribution -0.040 -0.672 1.448 1.597 sum -1.349 10.547 -7.402 12.956 Atomic orbital electron populations 1.21714 0.77405 1.04703 1.02638 1.57311 1.15789 1.20629 1.89892 1.20917 0.96327 0.84463 0.95357 1.22944 0.97465 1.01237 0.97878 0.87420 1.23339 0.94686 1.01850 1.01624 1.21734 1.02065 0.88455 0.98842 1.21371 1.01260 0.99039 0.95276 1.21430 1.01293 1.00012 0.95137 1.00661 0.72126 0.72195 0.73791 1.93455 1.41251 1.84992 1.78173 1.93428 1.67232 1.60249 1.78600 1.29777 1.07697 1.25806 1.25814 1.20446 0.95867 0.93665 0.94253 1.21360 1.01134 1.06256 0.93949 1.18193 0.91080 0.86528 0.93439 1.20205 0.95603 1.38531 0.95036 0.89018 1.27004 0.93688 0.93673 1.04124 1.69843 1.01227 1.32118 1.38659 0.85095 0.79308 0.79015 0.75519 1.17779 1.18726 1.18348 1.21289 1.03044 1.07272 0.96064 1.20439 0.93603 0.94352 0.93805 0.92532 0.87914 0.90886 0.88193 0.91009 0.89496 0.88810 0.91539 0.90949 0.92574 0.92922 0.90749 0.91362 0.86934 0.87076 0.89007 0.86991 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.02 10.68 127.77 1.36 3.38 16 2 N -1.00 -30.35 3.18 -539.15 -1.72 -32.07 16 3 C 0.15 4.02 4.69 86.38 0.40 4.42 16 4 C -0.18 -4.10 5.73 -10.79 -0.06 -4.16 16 5 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 6 C -0.18 -4.26 9.47 30.59 0.29 -3.97 16 7 C -0.11 -2.09 2.70 -52.18 -0.14 -2.23 16 8 C -0.11 -1.66 9.85 71.98 0.71 -0.95 16 9 C -0.12 -2.06 8.86 71.98 0.64 -1.42 16 10 S 2.72 106.17 5.64 -56.49 -0.32 105.85 16 11 O -0.99 -40.82 16.23 -128.00 -2.08 -42.90 16 12 O -1.00 -43.45 15.86 -128.00 -2.03 -45.48 16 13 C -0.80 -35.92 6.00 22.46 0.13 -35.79 16 14 C -0.02 -1.07 9.49 22.22 0.21 -0.86 16 15 C -0.21 -10.79 8.70 22.73 0.20 -10.59 16 16 C 0.11 5.83 5.57 -21.29 -0.12 5.71 16 17 C -0.47 -23.47 9.05 23.46 0.21 -23.26 16 18 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 19 C 0.03 1.60 5.15 85.25 0.44 2.04 16 20 N -0.80 -38.31 10.95 21.82 0.24 -38.07 16 21 Si 0.99 34.57 29.59 68.60 2.03 36.60 16 22 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 23 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 24 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 25 C -0.26 -12.40 9.80 22.73 0.22 -12.18 16 26 C 0.00 -0.10 9.49 22.22 0.21 0.11 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.87 8.07 -2.39 -0.02 1.86 16 29 H 0.07 1.94 7.02 -2.38 -0.02 1.92 16 30 H 0.10 2.16 7.73 -2.38 -0.02 2.14 16 31 H 0.07 2.02 7.34 -2.39 -0.02 2.01 16 32 H 0.09 2.31 7.94 -2.39 -0.02 2.29 16 33 H 0.09 2.12 8.05 -2.38 -0.02 2.10 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.89 7.92 -2.39 -0.02 0.87 16 36 H 0.06 0.83 7.90 -2.38 -0.02 0.81 16 37 H 0.05 0.98 7.90 -2.39 -0.02 0.96 16 38 H 0.07 1.03 7.92 -2.39 -0.02 1.01 16 39 H 0.07 1.06 7.83 -2.39 -0.02 1.04 16 40 H 0.11 5.02 7.60 -2.91 -0.02 5.00 16 41 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 42 H 0.30 12.78 8.30 -92.70 -0.77 12.01 16 43 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 44 H 0.12 4.94 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -62.83 373.67 1.82 -61.01 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.98 Total: 34.80 kcal Atomic # 6 Polarization: -84.45 SS G_CDS: 4.71 Total: -79.74 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -1.48 Total: -70.14 kcal Atomic # 8 Polarization: -84.27 SS G_CDS: -4.11 Total: -88.38 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 16 Polarization: 106.17 SS G_CDS: -0.32 Total: 105.85 kcal Total: -62.83 1.82 -61.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645946990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.517 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds