Wall clock time and date at job start Tue Mar 31 2020 13:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00299 * 2 1 4 4 H 1.48500 * 109.46990 * 269.99859 * 3 2 1 5 5 H 1.48497 * 109.47279 * 29.99423 * 3 2 1 6 6 H 1.48496 * 109.47663 * 150.00035 * 3 2 1 7 7 C 1.38660 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99792 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.35749 * 116.99754 * 185.05482 * 9 7 2 11 11 C 1.38896 * 120.07276 * 354.49969 * 10 9 7 12 12 C 1.38080 * 119.93109 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.06859 * 359.72898 * 12 11 10 14 14 C 1.38275 * 120.13591 * 0.52409 * 13 12 11 15 15 C 1.50700 * 119.96627 * 179.76223 * 14 13 12 16 16 N 1.46497 * 109.47219 * 269.72372 * 15 14 13 17 17 C 1.34777 * 120.00456 * 179.97438 * 16 15 14 18 18 O 1.21279 * 119.99629 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00270 * 179.97438 * 17 16 15 20 20 F 1.39896 * 109.54229 * 310.17363 * 19 17 16 21 21 C 1.53179 * 109.54366 * 70.42971 * 19 17 16 22 22 C 1.53092 * 109.15998 * 176.83561 * 21 19 17 23 23 O 1.42906 * 109.42417 * 302.40697 * 22 21 19 24 24 C 1.42899 * 114.09807 * 61.15684 * 23 22 21 25 25 C 1.53097 * 109.41280 * 298.83911 * 24 23 22 26 26 C 1.38120 * 120.07401 * 359.48004 * 14 13 12 27 27 H 0.96998 * 119.99861 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.03196 * 359.94373 * 11 10 9 29 29 H 1.07998 * 119.96328 * 180.02562 * 12 11 10 30 30 H 1.08002 * 119.92874 * 180.28416 * 13 12 11 31 31 H 1.08997 * 109.47749 * 149.72256 * 15 14 13 32 32 H 1.09004 * 109.47159 * 29.71840 * 15 14 13 33 33 H 0.97008 * 120.00048 * 359.97438 * 16 15 14 34 34 H 1.09002 * 109.51400 * 56.94002 * 21 19 17 35 35 H 1.08999 * 109.53496 * 296.75062 * 21 19 17 36 36 H 1.09000 * 109.47974 * 182.42407 * 22 21 19 37 37 H 1.08995 * 109.47821 * 62.39810 * 22 21 19 38 38 H 1.09006 * 109.48275 * 58.81824 * 24 23 22 39 39 H 1.08994 * 109.48314 * 178.84592 * 24 23 22 40 40 H 1.09005 * 109.52217 * 177.51273 * 25 24 23 41 41 H 1.08995 * 109.51913 * 297.70178 * 25 24 23 42 42 H 1.07994 * 120.03892 * 180.23067 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4058 -0.1060 11 6 3.2232 -3.5747 -0.0926 12 6 3.8529 -4.7987 -0.2012 13 6 5.2288 -4.8614 -0.3288 14 6 5.9788 -3.6997 -0.3371 15 6 7.4781 -3.7727 -0.4709 16 7 8.0837 -3.8569 0.8604 17 6 9.4233 -3.9323 0.9879 18 8 10.1274 -3.9310 0.0004 19 6 10.0462 -4.0183 2.3574 20 9 9.5194 -3.0129 3.1751 21 6 9.7470 -5.3895 2.9713 22 6 10.4493 -5.4970 4.3274 23 8 11.8530 -5.2933 4.1531 24 6 12.1954 -4.0097 3.6265 25 6 11.5635 -3.8426 2.2421 26 6 5.3549 -2.4722 -0.2288 27 1 -0.4850 0.8400 -0.0004 28 1 2.1485 -3.5262 0.0030 29 1 3.2701 -5.7079 -0.1913 30 1 5.7186 -5.8198 -0.4181 31 1 7.8415 -2.8797 -0.9795 32 1 7.7487 -4.6559 -1.0496 33 1 7.5205 -3.8583 1.6502 34 1 10.1136 -6.1731 2.3082 35 1 8.6714 -5.5007 3.1082 36 1 10.2753 -6.4868 4.7494 37 1 10.0531 -4.7389 5.0029 38 1 11.8220 -3.2321 4.2928 39 1 13.2792 -3.9280 3.5439 40 1 11.7867 -2.8473 1.8576 41 1 11.9670 -4.5949 1.5644 42 1 5.9409 -1.5652 -0.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771833035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:30 Heat of formation + Delta-G solvation = -135.905692 kcal Electronic energy + Delta-G solvation = -26865.395901 eV Core-core repulsion = 22725.521938 eV Total energy + Delta-G solvation = -4139.873963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.32232 -40.17980 -39.37253 -38.85064 -37.07481 -34.81530 -33.53163 -32.48754 -31.72693 -30.94965 -29.49919 -27.06117 -25.54753 -24.93753 -24.17259 -21.95254 -21.57478 -20.82145 -20.22314 -18.48471 -17.78603 -17.13976 -17.05439 -16.56307 -16.28853 -15.76207 -15.50541 -15.43390 -15.22667 -14.88253 -14.76923 -14.43305 -14.01628 -13.90034 -13.51073 -13.11796 -12.99148 -12.93995 -12.79554 -12.73588 -12.66235 -12.25990 -12.11611 -11.86906 -11.53611 -11.16362 -11.05180 -10.99203 -10.92627 -10.82158 -10.32355 -10.24567 -9.83067 -9.51495 -9.26325 -8.97100 -8.40913 -7.54582 -6.50481 -4.18016 1.70667 2.08026 2.18535 2.89977 3.16681 3.20670 3.34552 3.42870 3.82269 3.91145 4.16265 4.17317 4.28956 4.38199 4.42918 4.58416 4.75430 4.88504 4.96669 5.01755 5.04117 5.14658 5.20982 5.23705 5.32369 5.44588 5.53088 5.57058 5.66268 5.70597 5.73398 5.94501 6.08015 6.18116 6.34544 6.60469 6.71257 6.92063 7.03165 7.13923 7.22352 7.43955 7.67928 7.84542 7.92785 8.84238 9.44577 10.56832 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.002661 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.393827 B =10520.290940 C =11085.657610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.157 3.843 11 C -0.211 4.211 12 C -0.077 4.077 13 C -0.186 4.186 14 C -0.078 4.078 15 C 0.166 3.834 16 N -0.708 5.708 17 C 0.500 3.500 18 O -0.526 6.526 19 C 0.106 3.894 20 F -0.190 7.190 21 C -0.174 4.174 22 C 0.062 3.938 23 O -0.379 6.379 24 C 0.059 3.941 25 C -0.160 4.160 26 C -0.171 4.171 27 H 0.281 0.719 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.407 0.593 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.566 -10.438 6.618 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.104 3.896 11 C -0.230 4.230 12 C -0.095 4.095 13 C -0.206 4.206 14 C -0.078 4.078 15 C 0.044 3.956 16 N -0.359 5.359 17 C 0.283 3.717 18 O -0.402 6.402 19 C 0.085 3.915 20 F -0.171 7.171 21 C -0.213 4.213 22 C -0.015 4.015 23 O -0.298 6.298 24 C -0.017 4.017 25 C -0.198 4.198 26 C -0.190 4.190 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.242 0.758 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.051 -10.162 5.971 23.258 hybrid contribution -0.694 0.999 0.221 1.236 sum 19.357 -9.163 6.192 22.293 Atomic orbital electron populations 1.69639 1.05595 1.28658 1.47491 1.24472 0.95030 0.98897 0.95491 0.86182 0.80329 0.81358 0.79061 1.19797 1.20678 1.18346 1.20766 0.76748 0.96684 1.52553 0.87560 1.83578 1.22728 1.25543 1.80065 1.19051 0.91523 0.85668 0.93323 1.21379 1.01349 0.91907 1.08385 1.20807 0.94129 0.96874 0.97713 1.20537 0.93916 0.96654 1.09479 1.19217 0.93123 0.93116 1.02390 1.20237 0.89186 1.02787 0.83398 1.46141 1.06257 1.73015 1.10450 1.20652 0.82943 0.77316 0.90745 1.90732 1.61475 1.49240 1.38792 1.21212 0.95337 0.87649 0.87346 1.92924 1.87978 1.62300 1.73863 1.22813 1.03514 0.95215 0.99717 1.22579 0.81239 1.03025 0.94665 1.87958 1.22998 1.34460 1.84378 1.22643 1.00900 0.85609 0.92581 1.22595 0.91462 1.05805 0.99956 1.20084 0.92048 0.97220 1.09689 0.90916 0.84762 0.86899 0.87272 0.90550 0.90480 0.75788 0.88424 0.88788 0.87721 0.92063 0.92271 0.87774 0.88939 0.88069 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 13.96 55.48 0.77 -23.98 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 21.22 28.62 -169.99 -4.86 16.36 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.39 -10.70 9.95 30.89 0.31 -10.39 16 8 H 0.11 2.95 5.44 -52.48 -0.29 2.66 16 9 O -0.21 -5.44 8.59 0.05 0.00 -5.44 16 10 C 0.16 3.41 6.65 -39.11 -0.26 3.15 16 11 C -0.21 -4.24 9.17 -39.40 -0.36 -4.60 16 12 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 13 C -0.19 -2.79 9.70 -39.54 -0.38 -3.17 16 14 C -0.08 -1.20 5.25 -104.65 -0.55 -1.75 16 15 C 0.17 2.19 5.80 -5.20 -0.03 2.16 16 16 N -0.71 -8.52 5.52 -61.47 -0.34 -8.86 16 17 C 0.50 6.21 6.80 -10.98 -0.07 6.13 16 18 O -0.53 -8.00 15.93 5.56 0.09 -7.91 16 19 C 0.11 1.06 1.07 -91.58 -0.10 0.96 16 20 F -0.19 -2.11 16.01 2.25 0.04 -2.07 16 21 C -0.17 -1.36 5.19 -26.59 -0.14 -1.50 16 22 C 0.06 0.45 6.72 37.21 0.25 0.70 16 23 O -0.38 -3.43 10.77 -35.23 -0.38 -3.81 16 24 C 0.06 0.46 6.72 37.21 0.25 0.71 16 25 C -0.16 -1.45 4.61 -26.59 -0.12 -1.57 16 26 C -0.17 -3.15 9.65 -39.39 -0.38 -3.53 16 27 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.08 0.96 8.08 -51.93 -0.42 0.55 16 33 H 0.41 4.50 8.43 -40.82 -0.34 4.16 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 38 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.95 7.89 -51.93 -0.41 0.54 16 42 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -30.43 356.13 -6.92 -37.34 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.52 Total: 5.67 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.08 Total: -12.67 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.44 Total: -32.83 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.29 Total: -17.17 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.43 -6.92 -37.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771833035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.562 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds