Wall clock time and date at job start Tue Mar 31 2020 13:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35967 * 117.00323 * 2 1 4 4 C 1.38560 * 120.07982 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.01204 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.18291 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91760 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47318 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.46914 * 120.00107 * 7 6 5 10 10 C 1.53001 * 109.46842 * 240.00036 * 7 6 5 11 11 C 1.38201 * 120.16161 * 359.76636 * 6 5 4 12 12 C 1.38725 * 119.98209 * 0.50966 * 11 6 5 13 13 N 1.40125 * 120.08548 * 179.74431 * 12 11 6 14 14 C 1.34776 * 120.00224 * 325.35883 * 13 12 11 15 15 O 1.21299 * 119.99935 * 4.46142 * 14 13 12 16 16 C 1.50696 * 120.00189 * 184.45644 * 14 13 12 17 17 S 1.80999 * 109.47388 * 180.02562 * 16 14 13 18 18 C 1.76194 * 100.00400 * 179.97438 * 17 16 14 19 19 H 1.08010 * 119.99934 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00195 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00070 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00043 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46932 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47286 * 119.99609 * 22 20 18 25 25 H 1.48502 * 109.47003 * 239.99873 * 22 20 18 26 26 H 1.09000 * 109.47456 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46922 * 299.99927 * 1 2 3 28 28 H 1.09000 * 109.47356 * 59.99982 * 1 2 3 29 29 H 1.07995 * 119.99051 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.90772 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.46897 * 60.00007 * 8 7 6 32 32 H 1.09003 * 109.46941 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.46958 * 300.00238 * 8 7 6 34 34 H 1.09002 * 109.47009 * 60.00246 * 9 7 6 35 35 H 1.09003 * 109.46937 * 179.97438 * 9 7 6 36 36 H 1.08998 * 109.47065 * 299.99439 * 9 7 6 37 37 H 1.08994 * 109.47622 * 60.00106 * 10 7 6 38 38 H 1.09003 * 109.47195 * 180.02562 * 10 7 6 39 39 H 1.09001 * 109.47155 * 299.99727 * 10 7 6 40 40 H 1.07995 * 120.01057 * 180.25481 * 11 6 5 41 41 H 0.97003 * 119.99794 * 145.09217 * 13 12 11 42 42 H 1.09007 * 109.47039 * 300.00517 * 16 14 13 43 43 H 1.09000 * 109.47494 * 60.00302 * 16 14 13 44 44 H 0.96996 * 120.00068 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9225 3.6056 0.0011 6 6 3.3033 3.6806 0.0016 7 6 3.9829 5.0257 0.0028 8 6 2.9254 6.1314 0.0025 9 6 4.8562 5.1547 1.2524 10 6 4.8570 5.1564 -1.2461 11 6 4.0615 2.5252 0.0065 12 6 3.4373 1.2864 0.0002 13 7 4.2039 0.1135 -0.0003 14 6 5.3791 0.0768 -0.6591 15 8 5.8122 1.0813 -1.1833 16 6 6.1552 -1.2121 -0.7445 17 16 7.6771 -0.9389 -1.6854 18 6 8.3668 -2.5593 -1.6292 19 1 7.8443 -3.3509 -1.1125 20 6 9.5815 -2.8185 -2.2487 21 7 10.2180 -1.8538 -2.8788 22 14 10.3123 -4.5366 -2.1897 23 1 9.4076 -5.4333 -1.4262 24 1 10.4721 -5.0544 -3.5722 25 1 11.6384 -4.4878 -1.5230 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2148 2.3195 0.0014 30 1 1.3339 4.5112 0.0019 31 1 2.3023 6.0384 0.8920 32 1 3.4170 7.1043 0.0029 33 1 2.3036 6.0393 -0.8879 34 1 5.6096 4.3670 1.2521 35 1 5.3481 6.1274 1.2531 36 1 4.2334 5.0616 2.1421 37 1 4.2349 5.0645 -2.1364 38 1 5.3490 6.1291 -1.2451 39 1 5.6104 4.3687 -1.2464 40 1 5.1397 2.5867 0.0111 41 1 3.8907 -0.6709 0.4768 42 1 6.4058 -1.5526 0.2603 43 1 5.5498 -1.9685 -1.2439 44 1 11.0666 -2.0350 -3.3121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032660406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:59 Heat of formation + Delta-G solvation = -80.172786 kcal Electronic energy + Delta-G solvation = -24852.602613 eV Core-core repulsion = 21281.358586 eV Total energy + Delta-G solvation = -3571.244027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89946 -40.34802 -39.39697 -36.83807 -35.33483 -34.59878 -32.07366 -30.55734 -29.79059 -28.42724 -28.11486 -27.74894 -27.46573 -23.85992 -23.60433 -21.60141 -20.41461 -19.82326 -19.21521 -18.01497 -17.76081 -17.05447 -16.89532 -16.52707 -16.42631 -16.31209 -15.94700 -15.33649 -15.08642 -14.93236 -14.77302 -14.46746 -14.24681 -13.92797 -13.72487 -13.54488 -13.20207 -13.13221 -13.04274 -12.92217 -12.75581 -12.62671 -12.53538 -12.20554 -12.04062 -11.80625 -11.73288 -11.63975 -11.52390 -11.29175 -11.16882 -10.82718 -10.31104 -9.50715 -8.79061 -8.67145 -8.36271 -6.14479 0.26690 0.41510 1.21941 1.40720 1.43399 1.52647 1.57013 2.12393 2.25252 2.34791 2.77859 2.98087 3.26887 3.65298 3.78676 3.88384 4.07128 4.08283 4.14791 4.22920 4.38552 4.40407 4.43910 4.44800 4.51237 4.58008 4.76933 4.77346 4.80457 4.87174 4.91902 4.95127 5.03590 5.06753 5.19164 5.25307 5.35305 5.40971 5.41388 5.42821 5.52897 5.75814 5.85267 6.18736 6.33865 6.43597 7.05149 7.09276 8.73202 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003090 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.747957 B = 9057.909234 C =10630.376537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.093 3.907 4 C -0.185 4.185 5 C -0.093 4.093 6 C -0.097 4.097 7 C -0.025 4.025 8 C -0.137 4.137 9 C -0.137 4.137 10 C -0.139 4.139 11 C -0.099 4.099 12 C 0.095 3.905 13 N -0.653 5.653 14 C 0.533 3.467 15 O -0.540 6.540 16 C -0.128 4.128 17 S -0.141 6.141 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.273 1.273 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.117 0.883 41 H 0.423 0.577 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.514 10.751 9.854 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.046 3.954 4 C -0.203 4.203 5 C -0.111 4.111 6 C -0.098 4.098 7 C -0.025 4.025 8 C -0.194 4.194 9 C -0.194 4.194 10 C -0.196 4.196 11 C -0.120 4.120 12 C 0.000 4.000 13 N -0.299 5.299 14 C 0.320 3.680 15 O -0.416 6.416 16 C -0.279 4.279 17 S 0.086 5.914 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.199 1.199 26 H 0.134 0.866 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.181 0.819 30 H 0.177 0.823 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.135 0.865 41 H 0.261 0.739 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.557 12.208 8.877 27.141 hybrid contribution 0.245 -2.508 0.490 2.567 sum -22.312 9.700 9.366 26.070 Atomic orbital electron populations 1.23349 0.76098 1.05518 1.02450 1.86013 1.23709 1.26150 1.89051 1.18842 0.89750 0.86188 1.00647 1.21384 1.01158 0.90858 1.06939 1.21283 0.93294 0.98324 0.98191 1.19860 0.93995 0.94165 1.01734 1.19478 0.95791 0.91583 0.95634 1.21925 0.97825 0.96988 1.02660 1.21877 0.98996 1.01784 0.96772 1.21891 0.99072 1.01603 0.97083 1.20957 1.00455 0.90682 0.99878 1.17324 0.87844 0.86946 1.07844 1.43128 1.19998 1.14661 1.52157 1.20256 0.80876 0.89821 0.76997 1.90683 1.68247 1.36320 1.46328 1.23344 1.00537 0.97948 1.06076 1.85542 1.18717 1.17275 1.69888 1.23240 1.09552 0.95725 1.40982 0.89920 1.26126 0.96224 1.02998 0.93741 1.70183 1.16144 1.34615 1.33765 0.84896 0.78078 0.76532 0.78376 1.18075 1.19893 1.19851 0.86629 0.91035 0.91806 0.81943 0.82270 0.90997 0.91337 0.91724 0.94678 0.91022 0.91759 0.92936 0.90955 0.95004 0.86512 0.73867 0.86875 0.87149 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.25 10.05 -93.18 -0.94 -8.18 16 3 C 0.09 2.28 6.70 22.60 0.15 2.43 16 4 C -0.18 -3.47 9.04 22.35 0.20 -3.27 16 5 C -0.09 -1.77 8.97 22.28 0.20 -1.57 16 6 C -0.10 -2.38 4.76 -19.86 -0.09 -2.48 16 7 C -0.02 -0.52 0.85 -52.93 -0.05 -0.57 16 8 C -0.14 -1.91 7.13 71.98 0.51 -1.40 16 9 C -0.14 -2.84 8.28 71.98 0.60 -2.25 16 10 C -0.14 -3.42 8.29 71.98 0.60 -2.83 16 11 C -0.10 -3.16 7.36 22.38 0.16 -3.00 16 12 C 0.09 2.91 6.32 38.19 0.24 3.15 16 13 N -0.65 -20.52 5.19 -303.13 -1.57 -22.10 16 14 C 0.53 21.26 7.70 87.66 0.67 21.93 16 15 O -0.54 -25.68 13.28 -3.09 -0.04 -25.72 16 16 C -0.13 -5.29 6.16 71.23 0.44 -4.85 16 17 S -0.14 -7.95 20.57 -56.49 -1.16 -9.11 16 18 C -0.55 -31.59 9.50 67.95 0.65 -30.95 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.80 5.49 84.86 0.47 1.26 16 21 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 22 Si 1.00 44.01 29.55 68.60 2.03 46.03 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.16 1.87 6.30 -2.91 -0.02 1.85 16 30 H 0.16 2.00 5.88 -2.91 -0.02 1.98 16 31 H 0.07 0.81 7.51 -2.39 -0.02 0.79 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.83 7.51 -2.39 -0.02 0.81 16 34 H 0.03 0.89 7.37 -2.39 -0.02 0.87 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.03 0.99 7.40 -2.39 -0.02 0.97 16 40 H 0.12 4.46 5.23 -2.91 -0.02 4.44 16 41 H 0.42 10.73 8.57 -92.71 -0.79 9.93 16 42 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 43 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.40 371.89 4.68 -72.72 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.22 Total: 25.38 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 5.86 Total: -23.03 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.29 Total: -78.09 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.98 Total: -33.91 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -77.40 4.68 -72.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032660406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.453 kcal (2) G-P(sol) polarization free energy of solvation -77.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds