Wall clock time and date at job start Tue Mar 31 2020 14:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47162 * 2 1 4 4 C 1.52994 * 109.46941 * 120.00057 * 2 1 3 5 5 C 1.53002 * 109.46970 * 175.00188 * 4 2 1 6 6 H 1.08993 * 109.47618 * 54.99649 * 5 4 2 7 7 C 1.53001 * 109.47236 * 175.00028 * 5 4 2 8 8 O 1.42906 * 109.46998 * 54.99630 * 7 5 4 9 9 N 1.46501 * 109.46969 * 294.99739 * 5 4 2 10 10 C 1.34780 * 120.00293 * 155.00328 * 9 5 4 11 11 O 1.21605 * 119.99621 * 359.97438 * 10 9 5 12 12 C 1.47423 * 119.99995 * 179.72523 * 10 9 5 13 13 C 1.39672 * 120.21815 * 0.27339 * 12 10 9 14 14 C 1.37809 * 119.94183 * 180.02562 * 13 12 10 15 15 C 1.38655 * 120.37762 * 0.02562 * 14 13 12 16 16 C 1.37909 * 120.44198 * 0.02562 * 15 14 13 17 17 C 1.39113 * 120.04695 * 359.67326 * 16 15 14 18 18 S 1.76200 * 120.18927 * 180.30346 * 17 16 15 19 19 C 1.76198 * 100.00008 * 6.85364 * 18 17 16 20 20 H 1.07996 * 120.00208 * 5.65447 * 19 18 17 21 21 C 1.38816 * 119.99989 * 185.65415 * 19 18 17 22 22 N 1.31556 * 119.99749 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47084 * 90.00618 * 23 21 19 25 25 H 1.48501 * 109.47037 * 210.00013 * 23 21 19 26 26 H 1.48499 * 109.47449 * 330.00274 * 23 21 19 27 27 H 1.09007 * 109.47321 * 300.00039 * 1 2 3 28 28 H 1.09002 * 109.47504 * 59.99758 * 1 2 3 29 29 H 1.09001 * 109.47528 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47164 * 239.99795 * 2 1 3 31 31 H 1.08993 * 109.47266 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47080 * 299.99975 * 3 2 1 33 33 H 1.08998 * 109.47249 * 59.99847 * 3 2 1 34 34 H 1.08999 * 109.47439 * 54.99871 * 4 2 1 35 35 H 1.09004 * 109.47301 * 294.99691 * 4 2 1 36 36 H 1.09002 * 109.47107 * 174.99743 * 7 5 4 37 37 H 1.08994 * 109.46891 * 294.99847 * 7 5 4 38 38 H 0.96704 * 113.99423 * 180.02562 * 8 7 5 39 39 H 0.97002 * 119.99859 * 334.99854 * 9 5 4 40 40 H 1.08002 * 120.03095 * 0.02767 * 13 12 10 41 41 H 1.08002 * 119.81315 * 180.02562 * 14 13 12 42 42 H 1.08006 * 119.77984 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.97854 * 179.97438 * 16 15 14 44 44 H 0.96995 * 119.99918 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9954 0.1611 1.0527 7 6 4.0851 -1.4394 2.4918 8 8 3.4328 -2.6888 2.7281 9 7 3.9479 -1.6872 0.0626 10 6 5.1612 -1.5480 -0.5076 11 8 5.9376 -0.7113 -0.0882 12 6 5.5489 -2.4136 -1.6362 13 6 4.6604 -3.3757 -2.1218 14 6 5.0290 -4.1823 -3.1766 15 6 6.2792 -4.0454 -3.7605 16 6 7.1692 -3.1014 -3.2928 17 6 6.8135 -2.2734 -2.2330 18 16 7.9446 -1.0607 -1.6378 19 6 9.2167 -1.2086 -2.8480 20 1 9.0767 -1.8541 -3.7024 21 6 10.3988 -0.4954 -2.7032 22 7 10.5695 0.2906 -1.6622 23 14 11.7476 -0.6528 -3.9859 24 1 11.5489 0.3727 -5.0415 25 1 13.0698 -0.4497 -3.3412 26 1 11.6963 -2.0063 -4.5947 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 5.1604 -1.5998 2.4141 37 1 3.8779 -0.7594 3.3180 38 1 3.7143 -3.1319 3.5402 39 1 3.3284 -2.3543 -0.2721 40 1 3.6854 -3.4874 -1.6710 41 1 4.3402 -4.9252 -3.5507 42 1 6.5582 -4.6829 -4.5864 43 1 8.1412 -3.0015 -3.7529 44 1 11.3956 0.7886 -1.5608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040792701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:41 Heat of formation + Delta-G solvation = -76.853345 kcal Electronic energy + Delta-G solvation = -25233.169687 eV Core-core repulsion = 21662.069602 eV Total energy + Delta-G solvation = -3571.100085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.77776 -38.07134 -36.95757 -36.09791 -33.74317 -32.73850 -31.11391 -30.24261 -29.25495 -27.23136 -26.13579 -25.80776 -23.51775 -21.98206 -21.23212 -20.18643 -19.80042 -18.17796 -17.46672 -17.10863 -15.85221 -15.77672 -15.21910 -15.04244 -14.92656 -14.61840 -14.15663 -13.93652 -13.76986 -13.66023 -13.62431 -12.99293 -12.85780 -12.51993 -12.22605 -12.20669 -12.13426 -11.76111 -11.57118 -11.54204 -11.19661 -11.18071 -10.91963 -10.72085 -10.66314 -10.57635 -10.30818 -9.99607 -9.77595 -9.59135 -9.47359 -8.72613 -8.67757 -8.29521 -8.03701 -6.51051 -6.44897 -4.14967 1.56908 2.05079 3.11437 3.13576 3.20147 3.43682 3.54430 3.57954 4.07935 4.31132 4.52599 4.59730 4.82445 4.85919 4.96094 5.15450 5.21852 5.30018 5.34945 5.39211 5.44438 5.47507 5.57301 5.62803 5.64480 5.76529 5.79014 5.82653 5.90321 5.97208 6.07675 6.13973 6.16063 6.31452 6.37270 6.42078 6.62884 6.84813 6.90586 7.06629 7.16218 7.46535 7.58772 7.61857 7.99996 8.17650 8.84766 9.01484 10.58382 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.003624 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.354986 B = 7724.127241 C = 8355.367312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.115 4.115 5 C 0.150 3.850 6 H 0.102 0.898 7 C 0.061 3.939 8 O -0.569 6.569 9 N -0.723 5.723 10 C 0.553 3.447 11 O -0.514 6.514 12 C -0.176 4.176 13 C -0.060 4.060 14 C -0.187 4.187 15 C -0.077 4.077 16 C -0.154 4.154 17 C -0.056 4.056 18 S 0.183 5.817 19 C -0.596 4.596 20 H 0.090 0.910 21 C 0.084 3.916 22 N -0.859 5.859 23 Si 0.918 3.082 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.268 1.268 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.375 0.625 39 H 0.396 0.604 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.138 0.862 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 -4.057 5.054 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.153 4.153 5 C 0.045 3.955 6 H 0.120 0.880 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.377 5.377 10 C 0.342 3.658 11 O -0.392 6.392 12 C -0.191 4.191 13 C -0.080 4.080 14 C -0.212 4.212 15 C -0.099 4.099 16 C -0.179 4.179 17 C -0.176 4.176 18 S 0.447 5.553 19 C -0.742 4.742 20 H 0.108 0.892 21 C -0.127 4.127 22 N -0.491 5.491 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.221 0.779 39 H 0.231 0.769 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.156 0.844 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.347 -2.114 5.960 17.528 hybrid contribution 0.907 -1.497 -1.510 2.312 sum -15.440 -3.611 4.449 16.469 Atomic orbital electron populations 1.21829 0.95405 1.01501 1.01523 1.21143 0.95355 0.96660 0.98670 1.21905 1.01825 0.95718 1.01414 1.21814 0.93858 1.01452 0.98131 1.21038 0.94955 0.94956 0.84574 0.87978 1.22710 0.96873 0.85266 0.96945 1.86445 1.67898 1.35804 1.47279 1.45800 1.17382 1.39811 1.34708 1.18322 0.81247 0.83435 0.82747 1.90768 1.49980 1.35430 1.62994 1.19127 0.95635 1.02779 1.01584 1.20908 0.97216 0.94216 0.95655 1.20635 0.97591 1.02884 1.00041 1.21081 0.93682 0.96955 0.98207 1.21431 1.01073 0.96993 0.98437 1.23091 0.97673 0.99841 0.97022 1.84727 1.07954 1.33011 1.29605 1.24064 1.04824 1.33227 1.12116 0.89195 1.25090 0.97878 0.93729 0.96031 1.69975 1.26829 1.25047 1.27290 0.86159 0.79783 0.79129 0.80544 1.19882 1.20500 1.19245 0.92903 0.92845 0.92821 0.90825 0.91972 0.92852 0.92903 0.90681 0.90940 0.92639 0.93317 0.77916 0.76896 0.87162 0.87118 0.87071 0.84424 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.10 -1.00 2.86 -90.63 -0.26 -1.25 16 3 C -0.15 -1.60 8.95 37.15 0.33 -1.26 16 4 C -0.11 -1.15 3.94 -26.73 -0.11 -1.25 16 5 C 0.15 1.91 2.23 -67.93 -0.15 1.76 16 6 H 0.10 1.47 5.78 -51.93 -0.30 1.17 16 7 C 0.06 0.74 6.85 37.16 0.25 0.99 16 8 O -0.57 -6.26 12.83 -35.23 -0.45 -6.71 16 9 N -0.72 -10.49 4.34 -54.88 -0.24 -10.73 16 10 C 0.55 10.66 7.71 -12.52 -0.10 10.56 16 11 O -0.51 -11.76 13.43 5.27 0.07 -11.69 16 12 C -0.18 -3.51 5.89 -104.76 -0.62 -4.13 16 13 C -0.06 -0.97 9.53 -39.20 -0.37 -1.35 16 14 C -0.19 -2.94 10.02 -39.58 -0.40 -3.34 16 15 C -0.08 -1.34 10.02 -39.55 -0.40 -1.74 16 16 C -0.15 -3.26 9.22 -39.38 -0.36 -3.62 16 17 C -0.06 -1.30 6.14 -38.39 -0.24 -1.53 16 18 S 0.18 4.91 18.56 -107.50 -2.00 2.91 16 19 C -0.60 -16.49 9.00 30.95 0.28 -16.21 16 20 H 0.09 2.37 4.98 -52.49 -0.26 2.11 16 21 C 0.08 2.30 5.49 -17.46 -0.10 2.20 16 22 N -0.86 -24.76 13.22 55.49 0.73 -24.03 16 23 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.82 7.62 -51.93 -0.40 0.43 16 31 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.37 2.65 9.12 45.56 0.42 3.07 16 39 H 0.40 4.98 6.63 -40.82 -0.27 4.71 16 40 H 0.11 1.40 6.40 -52.49 -0.34 1.07 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.14 3.03 5.04 -52.49 -0.26 2.77 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -32.12 369.65 -8.73 -40.85 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.51 Total: 9.16 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -1.89 Total: -21.04 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.50 Total: -34.76 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.38 Total: -18.40 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -2.00 Total: 2.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.12 -8.73 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040792701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.003 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds