Wall clock time and date at job start Tue Mar 31 2020 14:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47162 * 2 1 4 4 C 1.52994 * 109.46941 * 120.00057 * 2 1 3 5 5 C 1.53002 * 109.46970 * 175.00188 * 4 2 1 6 6 H 1.08993 * 109.47618 * 54.99649 * 5 4 2 7 7 C 1.53001 * 109.47236 * 175.00028 * 5 4 2 8 8 O 1.42906 * 109.46998 * 54.99630 * 7 5 4 9 9 N 1.46501 * 109.46969 * 294.99739 * 5 4 2 10 10 C 1.34780 * 120.00293 * 155.00328 * 9 5 4 11 11 O 1.21605 * 119.99621 * 359.97438 * 10 9 5 12 12 C 1.47423 * 119.99995 * 179.72523 * 10 9 5 13 13 C 1.39672 * 120.21815 * 0.27339 * 12 10 9 14 14 C 1.37809 * 119.94183 * 180.02562 * 13 12 10 15 15 C 1.38655 * 120.37762 * 0.02562 * 14 13 12 16 16 C 1.37909 * 120.44198 * 0.02562 * 15 14 13 17 17 C 1.39113 * 120.04695 * 359.67326 * 16 15 14 18 18 S 1.76200 * 120.18927 * 180.30346 * 17 16 15 19 19 C 1.76198 * 100.00008 * 6.85364 * 18 17 16 20 20 H 1.07996 * 120.00208 * 5.65447 * 19 18 17 21 21 C 1.38816 * 119.99989 * 185.65415 * 19 18 17 22 22 N 1.31556 * 119.99749 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47084 * 90.00618 * 23 21 19 25 25 H 1.48501 * 109.47037 * 210.00013 * 23 21 19 26 26 H 1.48499 * 109.47449 * 330.00274 * 23 21 19 27 27 H 1.09007 * 109.47321 * 300.00039 * 1 2 3 28 28 H 1.09002 * 109.47504 * 59.99758 * 1 2 3 29 29 H 1.09001 * 109.47528 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47164 * 239.99795 * 2 1 3 31 31 H 1.08993 * 109.47266 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47080 * 299.99975 * 3 2 1 33 33 H 1.08998 * 109.47249 * 59.99847 * 3 2 1 34 34 H 1.08999 * 109.47439 * 54.99871 * 4 2 1 35 35 H 1.09004 * 109.47301 * 294.99691 * 4 2 1 36 36 H 1.09002 * 109.47107 * 174.99743 * 7 5 4 37 37 H 1.08994 * 109.46891 * 294.99847 * 7 5 4 38 38 H 0.96704 * 113.99423 * 180.02562 * 8 7 5 39 39 H 0.97002 * 119.99859 * 334.99854 * 9 5 4 40 40 H 1.08002 * 120.03095 * 0.02767 * 13 12 10 41 41 H 1.08002 * 119.81315 * 180.02562 * 14 13 12 42 42 H 1.08006 * 119.77984 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.97854 * 179.97438 * 16 15 14 44 44 H 0.96995 * 119.99918 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 3.9954 0.1611 1.0527 7 6 4.0851 -1.4394 2.4918 8 8 3.4328 -2.6888 2.7281 9 7 3.9479 -1.6872 0.0626 10 6 5.1612 -1.5480 -0.5076 11 8 5.9376 -0.7113 -0.0882 12 6 5.5489 -2.4136 -1.6362 13 6 4.6604 -3.3757 -2.1218 14 6 5.0290 -4.1823 -3.1766 15 6 6.2792 -4.0454 -3.7605 16 6 7.1692 -3.1014 -3.2928 17 6 6.8135 -2.2734 -2.2330 18 16 7.9446 -1.0607 -1.6378 19 6 9.2167 -1.2086 -2.8480 20 1 9.0767 -1.8541 -3.7024 21 6 10.3988 -0.4954 -2.7032 22 7 10.5695 0.2906 -1.6622 23 14 11.7476 -0.6528 -3.9859 24 1 11.5489 0.3727 -5.0415 25 1 13.0698 -0.4497 -3.3412 26 1 11.6963 -2.0063 -4.5947 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 5.1604 -1.5998 2.4141 37 1 3.8779 -0.7594 3.3180 38 1 3.7143 -3.1319 3.5402 39 1 3.3284 -2.3543 -0.2721 40 1 3.6854 -3.4874 -1.6710 41 1 4.3402 -4.9252 -3.5507 42 1 6.5582 -4.6829 -4.5864 43 1 8.1412 -3.0015 -3.7529 44 1 11.3956 0.7886 -1.5608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040792701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:40 Heat of formation + Delta-G solvation = -99.337335 kcal Electronic energy + Delta-G solvation = -25234.144666 eV Core-core repulsion = 21662.069602 eV Total energy + Delta-G solvation = -3572.075064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17238 -39.36311 -38.29535 -36.95523 -34.97495 -34.75915 -32.48244 -31.77686 -30.46560 -28.00564 -27.83548 -27.01524 -24.96983 -23.46103 -22.39800 -21.50944 -20.79165 -19.91546 -18.77200 -18.37504 -17.36019 -17.04059 -17.02218 -16.27142 -16.02970 -15.80676 -15.54651 -15.27171 -15.18841 -15.03027 -14.68702 -14.48411 -14.32019 -13.58274 -13.37948 -13.29472 -13.13751 -12.99442 -12.97921 -12.89879 -12.84464 -12.53761 -12.38013 -12.04973 -11.57313 -11.51309 -11.49199 -11.42800 -11.39518 -11.23918 -10.87947 -10.40965 -10.05504 -9.87881 -9.73893 -8.45479 -8.44805 -6.23501 0.05398 0.54303 1.26542 1.35956 1.44674 1.65414 2.05410 2.18283 2.31861 2.87904 3.05283 3.25657 3.43008 3.68542 3.95257 3.99093 4.03500 4.06089 4.26803 4.29713 4.39178 4.50729 4.57597 4.62692 4.65800 4.76436 4.83913 4.85809 4.86991 4.94990 5.03975 5.11635 5.13552 5.19744 5.36706 5.39080 5.46074 5.47003 5.54122 5.57268 5.67044 5.67941 6.10316 6.16795 6.69624 6.87219 6.96192 7.41571 8.60513 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.003624 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.354986 B = 7724.127241 C = 8355.367312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.101 4.101 5 C 0.143 3.857 6 H 0.080 0.920 7 C 0.068 3.932 8 O -0.573 6.573 9 N -0.700 5.700 10 C 0.547 3.453 11 O -0.557 6.557 12 C -0.181 4.181 13 C -0.055 4.055 14 C -0.158 4.158 15 C -0.070 4.070 16 C -0.176 4.176 17 C -0.073 4.073 18 S 0.067 5.933 19 C -0.604 4.604 20 H 0.093 0.907 21 C 0.025 3.975 22 N -0.905 5.905 23 Si 0.992 3.008 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.258 1.258 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.393 0.607 39 H 0.409 0.591 40 H 0.156 0.844 41 H 0.165 0.835 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.697 -6.993 4.048 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.139 4.139 5 C 0.039 3.961 6 H 0.098 0.902 7 C -0.011 4.011 8 O -0.380 6.380 9 N -0.353 5.353 10 C 0.336 3.664 11 O -0.438 6.438 12 C -0.195 4.195 13 C -0.074 4.074 14 C -0.181 4.181 15 C -0.091 4.091 16 C -0.201 4.201 17 C -0.191 4.191 18 S 0.326 5.674 19 C -0.750 4.750 20 H 0.111 0.889 21 C -0.181 4.181 22 N -0.540 5.540 23 Si 0.814 3.186 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.182 1.182 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.242 0.758 39 H 0.247 0.753 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.141 -5.139 4.952 21.368 hybrid contribution 1.665 -0.814 -1.181 2.198 sum -18.475 -5.954 3.771 19.774 Atomic orbital electron populations 1.21780 0.93553 1.02336 1.02077 1.21128 0.96795 0.95724 0.98054 1.21902 0.99995 0.96791 1.02182 1.21744 0.91037 1.02228 0.98858 1.21207 0.97104 0.93655 0.84151 0.90237 1.22508 0.94780 0.86428 0.97363 1.86381 1.67546 1.35293 1.48811 1.45626 1.15721 1.39606 1.34353 1.18468 0.82202 0.82925 0.82803 1.90768 1.51603 1.37191 1.64202 1.19530 0.95144 1.03418 1.01371 1.21418 0.98134 0.92364 0.95517 1.21311 0.97083 1.01895 0.97773 1.21529 0.93468 0.95516 0.98604 1.21447 1.01553 0.98469 0.98609 1.23003 0.97892 0.99744 0.98483 1.84887 1.11247 1.38548 1.32749 1.24263 1.05134 1.33400 1.12215 0.88897 1.26134 1.00361 0.93289 0.98284 1.70128 1.27583 1.26662 1.29617 0.85048 0.76461 0.79505 0.77630 1.19136 1.19754 1.18164 0.92010 0.92724 0.91814 0.92096 0.94783 0.92787 0.91493 0.89707 0.89313 0.96166 0.90885 0.75766 0.75342 0.82629 0.81764 0.83307 0.86388 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16 2 C -0.10 -1.77 2.86 -10.80 -0.03 -1.80 16 3 C -0.15 -3.12 8.95 71.98 0.64 -2.48 16 4 C -0.10 -1.77 3.94 30.59 0.12 -1.65 16 5 C 0.14 3.59 2.23 44.99 0.10 3.69 16 6 H 0.08 2.41 5.78 -2.39 -0.01 2.39 16 7 C 0.07 1.61 6.85 71.98 0.49 2.10 16 8 O -0.57 -11.22 12.83 -148.98 -1.91 -13.13 16 9 N -0.70 -19.68 4.34 -445.80 -1.94 -21.62 16 10 C 0.55 21.68 7.71 86.66 0.67 22.35 16 11 O -0.56 -27.55 13.43 -4.05 -0.05 -27.60 16 12 C -0.18 -7.18 5.89 -19.95 -0.12 -7.30 16 13 C -0.05 -1.54 9.53 22.51 0.21 -1.33 16 14 C -0.16 -4.04 10.02 22.27 0.22 -3.82 16 15 C -0.07 -2.18 10.02 22.29 0.22 -1.95 16 16 C -0.18 -7.46 9.22 22.40 0.21 -7.25 16 17 C -0.07 -3.50 6.14 23.04 0.14 -3.36 16 18 S 0.07 3.92 18.56 -56.49 -1.05 2.87 16 19 C -0.60 -35.70 9.00 67.96 0.61 -35.09 16 20 H 0.09 5.20 4.98 -2.91 -0.01 5.18 16 21 C 0.02 1.44 5.49 84.87 0.47 1.91 16 22 N -0.90 -55.85 13.22 21.65 0.29 -55.56 16 23 Si 0.99 44.36 29.55 68.60 2.03 46.38 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.24 7.62 -2.39 -0.02 1.23 16 31 H 0.03 0.89 6.46 -2.39 -0.02 0.87 16 32 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.38 7.73 -2.39 -0.02 1.37 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.39 4.63 9.12 -74.05 -0.68 3.96 16 39 H 0.41 9.05 6.63 -92.71 -0.61 8.43 16 40 H 0.16 3.01 6.40 -2.91 -0.02 2.99 16 41 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 43 H 0.12 5.42 5.04 -2.91 -0.01 5.40 16 44 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -79.04 369.65 1.73 -77.30 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.26 Total: 28.58 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 4.63 Total: -37.22 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -1.65 Total: -77.18 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.97 Total: -40.74 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.05 Total: 2.87 kcal Total: -79.04 1.73 -77.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040792701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.034 kcal (2) G-P(sol) polarization free energy of solvation -79.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds