Wall clock time and date at job start Tue Mar 31 2020 14:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47270 * 2 1 4 4 C 1.53004 * 109.47060 * 120.00034 * 2 1 3 5 5 C 1.52994 * 109.47149 * 65.17959 * 4 2 1 6 6 H 1.08998 * 109.48008 * 302.84578 * 5 4 2 7 7 C 1.53001 * 109.47049 * 182.84136 * 5 4 2 8 8 O 1.42903 * 109.47307 * 305.00383 * 7 5 4 9 9 N 1.46502 * 109.46895 * 62.84330 * 5 4 2 10 10 C 1.34783 * 119.99984 * 204.99632 * 9 5 4 11 11 O 1.21605 * 120.00095 * 0.02562 * 10 9 5 12 12 C 1.47430 * 119.99481 * 180.02562 * 10 9 5 13 13 C 1.39670 * 120.22217 * 359.97438 * 12 10 9 14 14 C 1.37796 * 119.94499 * 179.97438 * 13 12 10 15 15 C 1.38666 * 120.37984 * 0.02562 * 14 13 12 16 16 C 1.37915 * 120.43597 * 359.97438 * 15 14 13 17 17 C 1.39110 * 120.04648 * 359.74312 * 16 15 14 18 18 S 1.76205 * 120.18829 * 180.25795 * 17 16 15 19 19 C 1.76203 * 99.99876 * 7.26345 * 18 17 16 20 20 H 1.08003 * 119.99857 * 5.39597 * 19 18 17 21 21 C 1.38806 * 120.00400 * 185.38838 * 19 18 17 22 22 N 1.31556 * 119.99761 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00284 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47069 * 89.99898 * 23 21 19 25 25 H 1.48504 * 109.47136 * 209.99881 * 23 21 19 26 26 H 1.48494 * 109.47297 * 329.99883 * 23 21 19 27 27 H 1.08996 * 109.47634 * 299.99887 * 1 2 3 28 28 H 1.09001 * 109.46783 * 60.00364 * 1 2 3 29 29 H 1.09007 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47434 * 239.99656 * 2 1 3 31 31 H 1.08994 * 109.46605 * 304.95571 * 3 2 1 32 32 H 1.09006 * 109.46811 * 64.94898 * 3 2 1 33 33 H 1.08998 * 109.47121 * 184.94943 * 3 2 1 34 34 H 1.09004 * 109.46709 * 305.18360 * 4 2 1 35 35 H 1.08996 * 109.47528 * 185.18642 * 4 2 1 36 36 H 1.09004 * 109.47203 * 185.00243 * 7 5 4 37 37 H 1.08997 * 109.47461 * 65.00556 * 7 5 4 38 38 H 0.96693 * 114.00074 * 180.02562 * 8 7 5 39 39 H 0.97001 * 120.00104 * 25.00452 * 9 5 4 40 40 H 1.08010 * 120.02666 * 0.02562 * 13 12 10 41 41 H 1.08000 * 119.81740 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.78342 * 179.97438 * 15 14 13 43 43 H 1.07995 * 119.97406 * 180.02562 * 16 15 14 44 44 H 0.96995 * 120.00226 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6391 -2.1964 1.1859 6 1 0.5564 -2.2749 1.0873 7 6 2.0871 -2.9022 2.4673 8 8 3.4890 -2.7003 2.6572 9 7 2.2816 -2.8277 0.0305 10 6 1.7306 -3.9213 -0.5329 11 8 0.7000 -4.3835 -0.0824 12 6 2.3775 -4.5569 -1.6952 13 6 3.5610 -4.0294 -2.2167 14 6 4.1611 -4.6284 -3.3029 15 6 3.5965 -5.7538 -3.8839 16 6 2.4282 -6.2877 -3.3818 17 6 1.8104 -5.7010 -2.2821 18 16 0.3214 -6.3841 -1.6333 19 6 0.2182 -7.8589 -2.5920 20 1 1.0224 -8.1247 -3.2621 21 6 -0.8965 -8.6792 -2.4858 22 7 -1.8762 -8.3552 -1.6698 23 14 -1.0055 -10.2430 -3.5016 24 1 -0.4113 -11.3707 -2.7395 25 1 -2.4294 -10.5422 -3.7986 26 1 -0.2624 -10.0596 -4.7741 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6060 1.9812 -0.8422 32 1 1.7509 1.9301 0.9311 33 1 3.1264 1.4438 -0.0887 34 1 1.6028 -0.2638 2.1368 35 1 3.1260 -0.6416 1.2970 36 1 1.8816 -3.9695 2.3851 37 1 1.5425 -2.4918 3.3176 38 1 3.8429 -3.1214 3.4524 39 1 3.1035 -2.4589 -0.3291 40 1 4.0059 -3.1532 -1.7684 41 1 5.0764 -4.2190 -3.7042 42 1 4.0747 -6.2152 -4.7352 43 1 1.9952 -7.1647 -3.8398 44 1 -2.6550 -8.9286 -1.5953 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040792702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:43 Heat of formation + Delta-G solvation = -76.818540 kcal Electronic energy + Delta-G solvation = -25242.952410 eV Core-core repulsion = 21671.853834 eV Total energy + Delta-G solvation = -3571.098576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.78076 -38.07159 -36.95613 -36.09738 -33.73403 -32.73851 -31.11663 -30.24318 -29.25882 -27.22745 -26.13368 -25.80738 -23.51712 -21.98237 -21.23523 -20.20765 -19.77156 -18.18086 -17.46799 -17.11244 -15.84573 -15.77714 -15.21949 -15.03440 -14.93383 -14.60816 -14.15569 -13.93543 -13.76436 -13.66170 -13.62870 -12.99100 -12.85919 -12.53946 -12.22094 -12.21216 -12.13073 -11.75498 -11.57398 -11.53897 -11.19678 -11.18287 -10.92000 -10.70949 -10.66613 -10.57643 -10.30979 -9.99326 -9.77683 -9.59580 -9.46802 -8.73001 -8.67412 -8.29904 -8.03360 -6.51176 -6.44838 -4.14938 1.56857 2.05027 3.11438 3.13539 3.20119 3.43586 3.54907 3.57468 4.07916 4.31201 4.52637 4.59952 4.82380 4.86141 4.96082 5.15490 5.21922 5.29837 5.34991 5.39285 5.44319 5.47703 5.57426 5.62793 5.64420 5.77019 5.78871 5.82779 5.90207 5.97375 6.07843 6.14096 6.16213 6.31513 6.37267 6.42007 6.62835 6.84742 6.90525 7.06600 7.16137 7.46482 7.59029 7.61778 7.99991 8.17612 8.84781 9.01516 10.58433 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003619 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.551124 B = 7735.676292 C = 8387.243752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.115 4.115 5 C 0.150 3.850 6 H 0.102 0.898 7 C 0.061 3.939 8 O -0.569 6.569 9 N -0.723 5.723 10 C 0.553 3.447 11 O -0.514 6.514 12 C -0.176 4.176 13 C -0.060 4.060 14 C -0.187 4.187 15 C -0.077 4.077 16 C -0.154 4.154 17 C -0.056 4.056 18 S 0.183 5.817 19 C -0.596 4.596 20 H 0.090 0.910 21 C 0.084 3.916 22 N -0.859 5.859 23 Si 0.918 3.082 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.268 1.268 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.375 0.625 39 H 0.396 0.604 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.138 0.862 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 14.783 4.732 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.153 4.153 5 C 0.045 3.955 6 H 0.120 0.880 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.377 5.377 10 C 0.342 3.658 11 O -0.392 6.392 12 C -0.191 4.191 13 C -0.080 4.080 14 C -0.211 4.211 15 C -0.099 4.099 16 C -0.179 4.179 17 C -0.176 4.176 18 S 0.447 5.553 19 C -0.742 4.742 20 H 0.108 0.892 21 C -0.127 4.127 22 N -0.491 5.491 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.221 0.779 39 H 0.231 0.769 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.156 0.844 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.393 14.922 5.555 17.554 hybrid contribution 1.304 -1.601 -1.276 2.427 sum 8.697 13.321 4.278 16.474 Atomic orbital electron populations 1.21903 0.95174 1.02367 1.01398 1.21144 0.96132 0.95863 0.98662 1.21830 1.00770 0.96136 1.01531 1.21819 1.02093 0.93268 0.98127 1.21025 0.98679 0.91594 0.84182 0.88025 1.22709 0.81649 1.00280 0.97171 1.86439 1.23409 1.78541 1.49046 1.45799 1.28855 1.30393 1.32644 1.18322 0.84392 0.79952 0.83094 1.90769 1.23286 1.61710 1.63397 1.19129 0.99196 1.00352 1.00436 1.20904 0.93782 0.97803 0.95510 1.20635 1.01680 0.99207 0.99618 1.21085 0.95111 0.95379 0.98360 1.21429 0.96857 1.02173 0.97454 1.23090 1.02082 0.95889 0.96572 1.84728 1.14375 1.16707 1.39494 1.24063 1.08363 1.10482 1.31313 0.89202 1.25087 0.94122 0.98541 0.94982 1.69974 1.07453 1.37678 1.34040 0.86159 0.77812 0.81455 0.80189 1.19898 1.20492 1.19243 0.92912 0.92864 0.91990 0.90823 0.92826 0.92903 0.92840 0.90948 0.90634 0.92618 0.93322 0.77908 0.76893 0.87165 0.87117 0.87069 0.84432 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.95 37.16 0.33 -1.26 16 2 C -0.10 -0.99 2.85 -90.62 -0.26 -1.25 16 3 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 4 C -0.12 -1.15 3.99 -26.73 -0.11 -1.26 16 5 C 0.15 1.92 2.21 -67.93 -0.15 1.76 16 6 H 0.10 1.46 5.88 -51.93 -0.31 1.15 16 7 C 0.06 0.74 6.85 37.16 0.25 0.99 16 8 O -0.57 -6.27 12.78 -35.23 -0.45 -6.72 16 9 N -0.72 -10.48 4.26 -54.88 -0.23 -10.71 16 10 C 0.55 10.65 7.71 -12.51 -0.10 10.56 16 11 O -0.51 -11.76 13.43 5.27 0.07 -11.69 16 12 C -0.18 -3.51 5.89 -104.75 -0.62 -4.13 16 13 C -0.06 -0.97 9.53 -39.21 -0.37 -1.35 16 14 C -0.19 -2.94 10.02 -39.58 -0.40 -3.33 16 15 C -0.08 -1.34 10.03 -39.54 -0.40 -1.74 16 16 C -0.15 -3.25 9.22 -39.38 -0.36 -3.62 16 17 C -0.06 -1.30 6.14 -38.39 -0.24 -1.53 16 18 S 0.18 4.90 18.56 -107.50 -2.00 2.91 16 19 C -0.60 -16.49 9.00 30.94 0.28 -16.21 16 20 H 0.09 2.37 4.99 -52.48 -0.26 2.10 16 21 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 22 N -0.86 -24.77 13.22 55.49 0.73 -24.03 16 23 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.77 6.51 -51.92 -0.34 0.43 16 30 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.77 7.65 -51.93 -0.40 0.37 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.37 2.67 9.12 45.56 0.42 3.08 16 39 H 0.40 4.98 6.58 -40.82 -0.27 4.71 16 40 H 0.11 1.40 6.40 -52.48 -0.34 1.07 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.14 3.03 5.04 -52.49 -0.26 2.77 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -32.11 369.45 -8.72 -40.83 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.51 Total: 9.16 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -1.88 Total: -21.03 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.50 Total: -34.75 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.38 Total: -18.41 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -2.00 Total: 2.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.11 -8.72 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040792702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.984 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds