Wall clock time and date at job start Tue Mar 31 2020 14:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47270 * 2 1 4 4 C 1.53004 * 109.47060 * 120.00034 * 2 1 3 5 5 C 1.52994 * 109.47149 * 65.17959 * 4 2 1 6 6 H 1.08998 * 109.48008 * 302.84578 * 5 4 2 7 7 C 1.53001 * 109.47049 * 182.84136 * 5 4 2 8 8 O 1.42903 * 109.47307 * 305.00383 * 7 5 4 9 9 N 1.46502 * 109.46895 * 62.84330 * 5 4 2 10 10 C 1.34783 * 119.99984 * 204.99632 * 9 5 4 11 11 O 1.21605 * 120.00095 * 0.02562 * 10 9 5 12 12 C 1.47430 * 119.99481 * 180.02562 * 10 9 5 13 13 C 1.39670 * 120.22217 * 359.97438 * 12 10 9 14 14 C 1.37796 * 119.94499 * 179.97438 * 13 12 10 15 15 C 1.38666 * 120.37984 * 0.02562 * 14 13 12 16 16 C 1.37915 * 120.43597 * 359.97438 * 15 14 13 17 17 C 1.39110 * 120.04648 * 359.74312 * 16 15 14 18 18 S 1.76205 * 120.18829 * 180.25795 * 17 16 15 19 19 C 1.76203 * 99.99876 * 7.26345 * 18 17 16 20 20 H 1.08003 * 119.99857 * 5.39597 * 19 18 17 21 21 C 1.38806 * 120.00400 * 185.38838 * 19 18 17 22 22 N 1.31556 * 119.99761 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00284 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47069 * 89.99898 * 23 21 19 25 25 H 1.48504 * 109.47136 * 209.99881 * 23 21 19 26 26 H 1.48494 * 109.47297 * 329.99883 * 23 21 19 27 27 H 1.08996 * 109.47634 * 299.99887 * 1 2 3 28 28 H 1.09001 * 109.46783 * 60.00364 * 1 2 3 29 29 H 1.09007 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47434 * 239.99656 * 2 1 3 31 31 H 1.08994 * 109.46605 * 304.95571 * 3 2 1 32 32 H 1.09006 * 109.46811 * 64.94898 * 3 2 1 33 33 H 1.08998 * 109.47121 * 184.94943 * 3 2 1 34 34 H 1.09004 * 109.46709 * 305.18360 * 4 2 1 35 35 H 1.08996 * 109.47528 * 185.18642 * 4 2 1 36 36 H 1.09004 * 109.47203 * 185.00243 * 7 5 4 37 37 H 1.08997 * 109.47461 * 65.00556 * 7 5 4 38 38 H 0.96693 * 114.00074 * 180.02562 * 8 7 5 39 39 H 0.97001 * 120.00104 * 25.00452 * 9 5 4 40 40 H 1.08010 * 120.02666 * 0.02562 * 13 12 10 41 41 H 1.08000 * 119.81740 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.78342 * 179.97438 * 15 14 13 43 43 H 1.07995 * 119.97406 * 180.02562 * 16 15 14 44 44 H 0.96995 * 120.00226 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6391 -2.1964 1.1859 6 1 0.5564 -2.2749 1.0873 7 6 2.0871 -2.9022 2.4673 8 8 3.4890 -2.7003 2.6572 9 7 2.2816 -2.8277 0.0305 10 6 1.7306 -3.9213 -0.5329 11 8 0.7000 -4.3835 -0.0824 12 6 2.3775 -4.5569 -1.6952 13 6 3.5610 -4.0294 -2.2167 14 6 4.1611 -4.6284 -3.3029 15 6 3.5965 -5.7538 -3.8839 16 6 2.4282 -6.2877 -3.3818 17 6 1.8104 -5.7010 -2.2821 18 16 0.3214 -6.3841 -1.6333 19 6 0.2182 -7.8589 -2.5920 20 1 1.0224 -8.1247 -3.2621 21 6 -0.8965 -8.6792 -2.4858 22 7 -1.8762 -8.3552 -1.6698 23 14 -1.0055 -10.2430 -3.5016 24 1 -0.4113 -11.3707 -2.7395 25 1 -2.4294 -10.5422 -3.7986 26 1 -0.2624 -10.0596 -4.7741 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6060 1.9812 -0.8422 32 1 1.7509 1.9301 0.9311 33 1 3.1264 1.4438 -0.0887 34 1 1.6028 -0.2638 2.1368 35 1 3.1260 -0.6416 1.2970 36 1 1.8816 -3.9695 2.3851 37 1 1.5425 -2.4918 3.3176 38 1 3.8429 -3.1214 3.4524 39 1 3.1035 -2.4589 -0.3291 40 1 4.0059 -3.1532 -1.7684 41 1 5.0764 -4.2190 -3.7042 42 1 4.0747 -6.2152 -4.7352 43 1 1.9952 -7.1647 -3.8398 44 1 -2.6550 -8.9286 -1.5953 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040792702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:43 Heat of formation + Delta-G solvation = -99.254555 kcal Electronic energy + Delta-G solvation = -25243.925308 eV Core-core repulsion = 21671.853834 eV Total energy + Delta-G solvation = -3572.071474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17440 -39.36408 -38.29449 -36.95608 -34.96432 -34.75910 -32.48418 -31.77698 -30.47050 -28.00081 -27.83537 -27.01408 -24.96936 -23.46073 -22.39749 -21.52742 -20.76650 -19.91841 -18.77628 -18.37812 -17.35935 -17.04146 -17.01758 -16.26295 -16.04445 -15.79353 -15.54885 -15.26930 -15.17612 -15.03487 -14.68491 -14.48803 -14.31813 -13.59707 -13.37326 -13.29997 -13.14436 -12.99682 -12.97008 -12.88109 -12.86377 -12.53783 -12.37887 -12.05039 -11.55939 -11.51782 -11.49477 -11.42680 -11.39280 -11.23843 -10.87905 -10.41113 -10.04811 -9.89215 -9.72973 -8.45632 -8.44729 -6.23478 0.05391 0.54290 1.26517 1.35942 1.44646 1.65398 2.05477 2.18242 2.31786 2.87918 3.05200 3.25717 3.42977 3.68799 3.95427 3.99057 4.03460 4.06256 4.26818 4.29735 4.39335 4.50621 4.57393 4.62705 4.65714 4.76807 4.83884 4.86018 4.86990 4.95319 5.03895 5.11646 5.13735 5.19962 5.36698 5.39197 5.46198 5.47111 5.54322 5.57216 5.66937 5.67868 6.10297 6.16733 6.69638 6.87247 6.96212 7.41602 8.60553 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003619 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.551124 B = 7735.676292 C = 8387.243752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.102 4.102 5 C 0.144 3.856 6 H 0.079 0.921 7 C 0.068 3.932 8 O -0.573 6.573 9 N -0.700 5.700 10 C 0.547 3.453 11 O -0.557 6.557 12 C -0.181 4.181 13 C -0.055 4.055 14 C -0.158 4.158 15 C -0.070 4.070 16 C -0.175 4.175 17 C -0.073 4.073 18 S 0.067 5.933 19 C -0.603 4.603 20 H 0.093 0.907 21 C 0.025 3.975 22 N -0.905 5.905 23 Si 0.992 3.008 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.258 1.258 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.393 0.607 39 H 0.409 0.591 40 H 0.156 0.844 41 H 0.165 0.835 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.635 17.149 3.769 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.198 4.198 4 C -0.139 4.139 5 C 0.039 3.961 6 H 0.097 0.903 7 C -0.011 4.011 8 O -0.380 6.380 9 N -0.353 5.353 10 C 0.336 3.664 11 O -0.438 6.438 12 C -0.194 4.194 13 C -0.074 4.074 14 C -0.181 4.181 15 C -0.091 4.091 16 C -0.201 4.201 17 C -0.191 4.191 18 S 0.326 5.674 19 C -0.750 4.750 20 H 0.111 0.889 21 C -0.181 4.181 22 N -0.540 5.540 23 Si 0.814 3.186 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.182 1.182 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.242 0.758 39 H 0.247 0.753 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.602 17.368 4.586 21.384 hybrid contribution 0.371 -2.041 -0.978 2.293 sum 11.972 15.328 3.609 19.781 Atomic orbital electron populations 1.21900 0.96083 1.00699 1.02160 1.21131 0.95330 0.97146 0.98065 1.21782 1.01308 0.94535 1.02133 1.21750 1.02607 0.90695 0.98869 1.21193 0.97543 0.93628 0.83700 0.90283 1.22507 0.82822 0.98114 0.97650 1.86375 1.22401 1.78720 1.50542 1.45623 1.28683 1.28568 1.32415 1.18469 0.83988 0.80790 0.83154 1.90769 1.25314 1.63187 1.64486 1.19531 1.00263 0.99295 1.00359 1.21414 0.91866 0.98753 0.95407 1.21310 1.02163 0.97032 0.97545 1.21533 0.93215 0.95512 0.98863 1.21445 0.98716 1.02326 0.97571 1.23002 1.00568 0.97520 0.98038 1.84888 1.19678 1.19300 1.43573 1.24261 1.08757 1.10829 1.31149 0.88909 1.26131 0.93602 1.02110 0.96232 1.70127 1.08287 1.39313 1.36269 0.85047 0.78115 0.76854 0.78624 1.19144 1.19750 1.18164 0.91540 0.92776 0.94841 0.92013 0.92691 0.92003 0.91851 0.89330 0.89678 0.96162 0.90889 0.75765 0.75343 0.82636 0.81763 0.83305 0.86398 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.95 71.98 0.64 -2.47 16 2 C -0.10 -1.75 2.85 -10.79 -0.03 -1.78 16 3 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 4 C -0.10 -1.78 3.99 30.59 0.12 -1.66 16 5 C 0.14 3.60 2.21 44.99 0.10 3.70 16 6 H 0.08 2.39 5.88 -2.39 -0.01 2.38 16 7 C 0.07 1.61 6.85 71.98 0.49 2.10 16 8 O -0.57 -11.26 12.78 -148.98 -1.90 -13.16 16 9 N -0.70 -19.66 4.26 -445.79 -1.90 -21.56 16 10 C 0.55 21.67 7.71 86.66 0.67 22.34 16 11 O -0.56 -27.54 13.43 -4.05 -0.05 -27.60 16 12 C -0.18 -7.17 5.89 -19.95 -0.12 -7.29 16 13 C -0.05 -1.54 9.53 22.51 0.21 -1.33 16 14 C -0.16 -4.03 10.02 22.27 0.22 -3.81 16 15 C -0.07 -2.18 10.03 22.30 0.22 -1.95 16 16 C -0.18 -7.45 9.22 22.40 0.21 -7.24 16 17 C -0.07 -3.50 6.14 23.04 0.14 -3.36 16 18 S 0.07 3.91 18.56 -56.49 -1.05 2.86 16 19 C -0.60 -35.69 9.00 67.96 0.61 -35.08 16 20 H 0.09 5.19 4.99 -2.91 -0.01 5.17 16 21 C 0.02 1.44 5.49 84.87 0.47 1.90 16 22 N -0.90 -55.86 13.22 21.65 0.29 -55.57 16 23 Si 0.99 44.36 29.55 68.60 2.03 46.38 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.03 0.87 6.51 -2.38 -0.02 0.86 16 30 H 0.06 1.24 7.50 -2.39 -0.02 1.23 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.39 7.65 -2.39 -0.02 1.37 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.39 4.66 9.12 -74.06 -0.68 3.99 16 39 H 0.41 9.05 6.58 -92.71 -0.61 8.44 16 40 H 0.16 3.01 6.40 -2.91 -0.02 2.99 16 41 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 42 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 43 H 0.12 5.41 5.04 -2.91 -0.01 5.40 16 44 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -79.03 369.45 1.78 -77.24 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.25 Total: 28.57 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 4.63 Total: -37.17 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -1.61 Total: -77.13 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.96 Total: -40.76 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.05 Total: 2.86 kcal Total: -79.03 1.78 -77.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040792702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.013 kcal (2) G-P(sol) polarization free energy of solvation -79.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds