Wall clock time and date at job start Tue Mar 31 2020 14:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 116.99862 * 2 1 4 4 C 1.38735 * 120.05525 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94469 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05629 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94691 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46851 * 19.99786 * 7 6 5 9 9 N 1.46490 * 109.47438 * 139.99990 * 7 6 5 10 10 C 1.34779 * 120.00347 * 205.00159 * 9 7 6 11 11 O 1.21277 * 119.99642 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00462 * 179.97438 * 10 9 7 13 13 S 1.80994 * 109.47020 * 179.97438 * 12 10 9 14 14 C 1.76205 * 99.99948 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99752 * 0.02562 * 14 13 12 16 16 C 1.38794 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31633 * 120.00158 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00018 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47265 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47205 * 119.99967 * 18 16 14 21 21 H 1.48498 * 109.46985 * 240.00119 * 18 16 14 22 22 C 1.53006 * 109.46928 * 260.00056 * 7 6 5 23 23 C 1.52997 * 109.47127 * 304.99499 * 22 7 6 24 24 C 1.52992 * 109.47223 * 65.00005 * 22 7 6 25 25 C 1.38271 * 120.11400 * 0.27141 * 6 5 4 26 26 C 1.38152 * 120.05093 * 359.45136 * 25 6 5 27 27 H 1.09000 * 109.47046 * 300.00153 * 1 2 3 28 28 H 1.08997 * 109.47013 * 60.00181 * 1 2 3 29 29 H 1.09003 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.02606 * 359.95430 * 4 3 2 31 31 H 1.07997 * 119.97268 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00369 * 25.00071 * 9 7 6 33 33 H 1.08994 * 109.47044 * 300.00725 * 12 10 9 34 34 H 1.09007 * 109.46387 * 60.00006 * 12 10 9 35 35 H 0.96999 * 120.00161 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.46505 * 184.99370 * 22 7 6 37 37 H 1.09002 * 109.47153 * 180.02562 * 23 22 7 38 38 H 1.09001 * 109.46832 * 60.00321 * 23 22 7 39 39 H 1.09004 * 109.47261 * 300.00303 * 23 22 7 40 40 H 1.09002 * 109.47103 * 179.97438 * 24 22 7 41 41 H 1.09001 * 109.47066 * 299.99881 * 24 22 7 42 42 H 1.08996 * 109.47747 * 59.99547 * 24 22 7 43 43 H 1.07997 * 119.97785 * 179.70612 * 25 6 5 44 44 H 1.08002 * 120.02821 * 180.27304 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3020 3.6758 -0.0005 7 6 3.9860 5.0185 -0.0005 8 1 5.0114 4.9039 -0.3524 9 7 3.2647 5.9341 -0.8878 10 6 3.9087 6.9774 -1.4475 11 8 5.0856 7.1579 -1.2169 12 6 3.1668 7.9191 -2.3608 13 16 4.2964 9.2061 -2.9469 14 6 3.1981 10.1379 -3.9620 15 1 2.1660 9.8355 -4.0603 16 6 3.6595 11.2604 -4.6355 17 7 4.9174 11.6293 -4.5154 18 14 2.4950 12.2486 -5.7111 19 1 1.1453 11.6302 -5.6777 20 1 2.4144 13.6418 -5.2035 21 1 2.9998 12.2589 -7.1076 22 6 3.9949 5.5863 1.4202 23 6 2.5643 5.6306 1.9607 24 6 4.8528 4.6950 2.3203 25 6 1.9211 3.6048 0.0062 26 6 1.2915 2.3751 0.0010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 4.0209 0.3799 -0.0002 31 1 5.1345 2.5751 -0.0019 32 1 2.3235 5.7896 -1.0726 33 1 2.7737 7.3645 -3.2127 34 1 2.3429 8.3798 -1.8157 35 1 5.2399 12.4136 -4.9863 36 1 4.4094 6.5944 1.4059 37 1 2.5705 6.0356 2.9727 38 1 2.1499 4.6225 1.9749 39 1 1.9531 6.2657 1.3194 40 1 4.8595 5.0998 3.3324 41 1 4.4385 3.6869 2.3345 42 1 5.8720 4.6634 1.9353 43 1 1.3342 4.5114 0.0114 44 1 0.2129 2.3201 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047904284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:02 Heat of formation + Delta-G solvation = -59.452786 kcal Electronic energy + Delta-G solvation = -24638.891290 eV Core-core repulsion = 21068.545750 eV Total energy + Delta-G solvation = -3570.345540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77366 -39.55239 -38.04826 -35.90513 -33.18778 -32.42205 -31.44338 -30.64697 -29.17410 -27.69467 -27.27202 -25.64589 -25.22905 -22.89302 -21.99286 -20.59187 -19.47605 -18.50599 -17.90554 -16.72484 -16.55480 -16.09758 -15.96257 -15.45866 -15.11661 -14.80221 -14.71626 -14.26716 -14.13094 -13.84284 -13.79836 -13.55605 -13.14333 -12.91052 -12.70182 -12.42479 -12.33368 -12.15449 -12.07219 -11.77397 -11.51922 -11.17037 -11.07137 -11.02803 -11.01185 -10.99198 -10.75839 -10.58862 -9.79951 -9.38934 -9.23986 -9.07178 -8.85564 -8.34830 -8.21998 -6.48828 -6.21273 -3.91422 1.07009 1.11769 2.94264 3.04549 3.11419 3.21765 3.28373 3.32757 3.48532 3.76508 4.20843 4.45963 4.47888 4.59473 4.73230 4.77334 4.84879 5.00110 5.06660 5.07453 5.08929 5.13982 5.16989 5.19592 5.35948 5.53957 5.57866 5.66822 5.70539 5.75773 5.81210 5.87032 5.90783 5.95437 6.04194 6.07641 6.14980 6.18883 6.30012 6.34875 6.47041 6.71473 7.07019 7.60390 7.72718 8.35961 8.63637 9.24244 10.86184 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.002606 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.499917 B =10743.584356 C =11606.071319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.149 4.149 5 C -0.066 4.066 6 C -0.117 4.117 7 C 0.195 3.805 8 H 0.096 0.904 9 N -0.732 5.732 10 C 0.534 3.466 11 O -0.516 6.516 12 C -0.154 4.154 13 S -0.059 6.059 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.103 4.103 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.071 4.071 26 C -0.206 4.206 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.395 0.605 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.126 0.874 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.104 -22.247 12.817 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.168 4.168 5 C -0.085 4.085 6 C -0.118 4.118 7 C 0.090 3.910 8 H 0.114 0.886 9 N -0.386 5.386 10 C 0.320 3.680 11 O -0.390 6.390 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.123 4.123 23 C -0.208 4.208 24 C -0.203 4.203 25 C -0.089 4.089 26 C -0.225 4.225 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.144 0.856 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.915 -21.998 13.142 26.541 hybrid contribution -2.912 0.525 -1.066 3.145 sum -9.826 -21.473 12.076 26.523 Atomic orbital electron populations 1.23055 0.78377 1.03914 1.01437 1.86065 1.21401 1.27053 1.88763 1.19049 0.92399 0.84102 0.96597 1.20399 0.91331 0.98578 1.06478 1.20839 1.00053 0.90668 0.96920 1.19814 0.93676 0.94746 1.03521 1.19742 0.96512 0.84860 0.89852 0.88646 1.46144 1.13855 1.28877 1.49741 1.20293 0.87469 0.80540 0.79713 1.90697 1.15700 1.72059 1.60514 1.23536 1.04555 1.01540 1.00801 1.85392 1.13302 1.25194 1.59388 1.22907 0.98087 1.14365 1.32899 0.90922 1.24994 0.95644 0.96562 0.96437 1.70029 1.14091 1.25127 1.41034 0.86119 0.80250 0.79472 0.79663 1.19637 1.20576 1.20578 1.21461 0.96505 1.00610 0.93735 1.22005 0.96345 1.01771 1.00697 1.21809 0.99684 0.99577 0.99191 1.20796 0.93979 0.97102 0.97053 1.21194 1.00011 0.92215 1.09089 0.92645 0.92556 0.88292 0.85129 0.85014 0.76989 0.89289 0.89305 0.92251 0.89934 0.92848 0.92129 0.92670 0.92601 0.92488 0.92418 0.85617 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.94 10.50 -19.41 -0.20 -3.14 16 3 C 0.12 1.20 6.69 -39.21 -0.26 0.93 16 4 C -0.15 -1.41 9.99 -39.43 -0.39 -1.81 16 5 C -0.07 -0.63 8.75 -39.61 -0.35 -0.98 16 6 C -0.12 -1.19 3.87 -104.60 -0.40 -1.59 16 7 C 0.20 2.36 2.02 -69.09 -0.14 2.22 16 8 H 0.10 1.32 7.44 -51.93 -0.39 0.94 16 9 N -0.73 -9.86 4.48 -54.93 -0.25 -10.10 16 10 C 0.53 9.85 7.81 -10.98 -0.09 9.77 16 11 O -0.52 -11.49 15.52 5.56 0.09 -11.40 16 12 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 13 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 14 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 15 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 18 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.10 -1.18 2.87 -90.62 -0.26 -1.44 16 23 C -0.15 -1.48 7.83 37.16 0.29 -1.19 16 24 C -0.14 -1.41 8.91 37.15 0.33 -1.08 16 25 C -0.07 -0.65 6.68 -39.60 -0.26 -0.91 16 26 C -0.21 -1.80 9.04 -39.43 -0.36 -2.16 16 27 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.09 8.03 -52.49 -0.42 0.67 16 32 H 0.40 4.34 6.88 -40.82 -0.28 4.06 16 33 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.55 5.63 -51.93 -0.29 0.26 16 39 H 0.05 0.55 7.57 -51.93 -0.39 0.16 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.51 6.76 -51.93 -0.35 0.16 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.13 1.00 6.04 -52.49 -0.32 0.68 16 44 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -34.41 371.73 -8.24 -42.65 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.49 Total: 2.18 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -0.48 Total: -12.92 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.49 Total: -35.56 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.12 Total: -14.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.41 -8.24 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047904284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.801 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds