Wall clock time and date at job start Tue Mar 31 2020 14:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35906 * 116.99918 * 2 1 4 4 C 1.38735 * 120.05153 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94158 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05735 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.94242 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47227 * 340.00707 * 7 6 5 9 9 N 1.46496 * 109.46850 * 219.99673 * 7 6 5 10 10 C 1.34774 * 119.99544 * 155.00384 * 9 7 6 11 11 O 1.21279 * 120.00472 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 S 1.81002 * 109.47200 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99878 * 179.97438 * 13 12 10 15 15 H 1.08006 * 120.00031 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00096 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99737 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47409 * 89.99815 * 18 16 14 20 20 H 1.48504 * 109.46732 * 209.99538 * 18 16 14 21 21 H 1.48503 * 109.47095 * 329.99265 * 18 16 14 22 22 C 1.53003 * 109.46565 * 99.99867 * 7 6 5 23 23 C 1.52996 * 109.47657 * 299.99903 * 22 7 6 24 24 C 1.53010 * 109.46988 * 60.00203 * 22 7 6 25 25 C 1.38261 * 120.10990 * 0.27500 * 6 5 4 26 26 C 1.38146 * 120.05316 * 359.45125 * 25 6 5 27 27 H 1.08997 * 109.47573 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47164 * 300.00508 * 1 2 3 29 29 H 1.09007 * 109.46898 * 59.99963 * 1 2 3 30 30 H 1.08002 * 120.02782 * 359.95126 * 4 3 2 31 31 H 1.08003 * 119.97314 * 180.02562 * 5 4 3 32 32 H 0.96994 * 120.00700 * 335.00503 * 9 7 6 33 33 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 34 34 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 35 35 H 0.97001 * 119.99701 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.46755 * 179.97438 * 22 7 6 37 37 H 1.08994 * 109.47414 * 180.02562 * 23 22 7 38 38 H 1.09001 * 109.46909 * 300.00277 * 23 22 7 39 39 H 1.09007 * 109.47089 * 59.99993 * 23 22 7 40 40 H 1.08992 * 109.47213 * 59.99522 * 24 22 7 41 41 H 1.09000 * 109.46656 * 179.97438 * 24 22 7 42 42 H 1.08997 * 109.46905 * 299.99336 * 24 22 7 43 43 H 1.07998 * 119.96862 * 179.70906 * 25 6 5 44 44 H 1.08005 * 120.02578 * 180.28157 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6758 -0.0016 7 6 3.9862 5.0185 -0.0016 8 1 5.0112 4.9040 0.3510 9 7 3.2641 5.9345 0.8847 10 6 3.9078 6.9780 1.4444 11 8 5.0847 7.1589 1.2139 12 6 3.1652 7.9200 2.3567 13 16 4.2947 9.2065 2.9444 14 6 3.1956 10.1388 3.9580 15 1 2.1631 9.8370 4.0549 16 6 3.6565 11.2618 4.6313 17 7 4.9147 11.6299 4.5128 18 14 2.4914 12.2497 5.7064 19 1 2.5207 11.7135 7.0909 20 1 2.9152 13.6729 5.7177 21 1 1.1123 12.1482 5.1653 22 6 3.9963 5.5856 -1.4226 23 6 4.7503 4.6290 -2.3483 24 6 2.5575 5.7464 -1.9178 25 6 1.9212 3.6048 0.0031 26 6 1.2916 2.3751 -0.0021 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0208 0.3799 0.0018 31 1 5.1346 2.5749 0.0000 32 1 2.3228 5.7901 1.0688 33 1 2.3418 8.3807 1.8109 34 1 2.7714 7.3658 3.2087 35 1 5.2368 12.4144 4.9836 36 1 4.4908 6.5570 -1.4226 37 1 4.7579 5.0333 -3.3605 38 1 5.7753 4.5145 -1.9956 39 1 4.2554 3.6577 -2.3483 40 1 2.0203 6.4279 -1.2583 41 1 2.5647 6.1509 -2.9299 42 1 2.0626 4.7752 -1.9177 43 1 1.3344 4.5114 0.0065 44 1 0.2130 2.3202 -0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047904287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:05 Heat of formation + Delta-G solvation = -59.296897 kcal Electronic energy + Delta-G solvation = -24646.556731 eV Core-core repulsion = 21076.217951 eV Total energy + Delta-G solvation = -3570.338780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77100 -39.55532 -38.04254 -35.91067 -33.17541 -32.42122 -31.43467 -30.65582 -29.17631 -27.67903 -27.26649 -25.65023 -25.23516 -22.90004 -22.00073 -20.59852 -19.44817 -18.50924 -17.90493 -16.72916 -16.54515 -16.09388 -15.95385 -15.46266 -15.14621 -14.80045 -14.72967 -14.26460 -14.12959 -13.85699 -13.75081 -13.57223 -13.13520 -12.89578 -12.70326 -12.41977 -12.34153 -12.14889 -12.06293 -11.79715 -11.52013 -11.16353 -11.06209 -11.04275 -11.01715 -10.98365 -10.76138 -10.57572 -9.80872 -9.38958 -9.24374 -9.06304 -8.85444 -8.34995 -8.22387 -6.48790 -6.21051 -3.91265 1.06949 1.11866 2.94281 3.04542 3.11488 3.22639 3.28156 3.32004 3.48524 3.76403 4.21086 4.46159 4.47837 4.59429 4.73228 4.77316 4.84958 4.99853 5.06829 5.08557 5.09251 5.14098 5.17161 5.19445 5.35556 5.53630 5.58075 5.66962 5.70451 5.75821 5.81228 5.88133 5.90851 5.95481 6.04239 6.07615 6.14960 6.19273 6.30367 6.34905 6.47028 6.71219 7.07009 7.60138 7.72694 8.35813 8.63664 9.24300 10.86359 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.002605 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.319673 B =10744.442410 C =11591.640656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.149 4.149 5 C -0.066 4.066 6 C -0.116 4.116 7 C 0.195 3.805 8 H 0.095 0.905 9 N -0.732 5.732 10 C 0.534 3.466 11 O -0.516 6.516 12 C -0.154 4.154 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.104 4.104 23 C -0.145 4.145 24 C -0.151 4.151 25 C -0.072 4.072 26 C -0.206 4.206 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.395 0.605 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.126 0.874 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 -22.231 -12.790 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.167 4.167 5 C -0.085 4.085 6 C -0.117 4.117 7 C 0.090 3.910 8 H 0.113 0.887 9 N -0.386 5.386 10 C 0.320 3.680 11 O -0.390 6.390 12 C -0.304 4.304 13 S 0.168 5.832 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.123 4.123 23 C -0.202 4.202 24 C -0.208 4.208 25 C -0.090 4.090 26 C -0.225 4.225 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.927 -21.977 -13.113 26.513 hybrid contribution -2.917 0.516 1.069 3.149 sum -9.844 -21.461 -12.044 26.505 Atomic orbital electron populations 1.23054 0.78381 1.03913 1.01435 1.86066 1.21399 1.27050 1.88771 1.19047 0.92399 0.84102 0.96625 1.20398 0.91332 0.98580 1.06440 1.20842 1.00055 0.90668 0.96918 1.19816 0.93676 0.94751 1.03451 1.19737 0.96487 0.84852 0.89885 0.88658 1.46143 1.13830 1.28860 1.49765 1.20291 0.87473 0.80543 0.79702 1.90696 1.15712 1.72066 1.60501 1.23538 1.04552 1.01542 1.00808 1.85389 1.13219 1.25238 1.59385 1.22868 0.98034 1.14386 1.33059 0.90974 1.24991 0.95654 0.96545 0.96419 1.70019 1.14099 1.25201 1.40959 0.86172 0.80314 0.78867 0.80168 1.20282 1.20758 1.19716 1.21460 0.96934 1.00217 0.93709 1.21817 1.00152 0.99267 0.99012 1.21974 0.96303 1.01664 1.00884 1.20782 0.93977 0.97086 0.97189 1.21189 1.00010 0.92217 1.09035 0.88291 0.92560 0.92647 0.85126 0.85014 0.76972 0.89305 0.89297 0.92197 0.89934 0.92627 0.92482 0.92439 0.92569 0.92830 0.92233 0.85621 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.94 10.50 -19.44 -0.20 -3.14 16 3 C 0.12 1.19 6.69 -39.22 -0.26 0.93 16 4 C -0.15 -1.41 9.99 -39.43 -0.39 -1.80 16 5 C -0.07 -0.63 8.70 -39.61 -0.34 -0.98 16 6 C -0.12 -1.18 3.80 -104.60 -0.40 -1.58 16 7 C 0.20 2.36 2.08 -69.08 -0.14 2.21 16 8 H 0.10 1.32 7.44 -51.93 -0.39 0.94 16 9 N -0.73 -9.83 4.26 -54.93 -0.23 -10.07 16 10 C 0.53 9.85 7.81 -10.98 -0.09 9.76 16 11 O -0.52 -11.48 15.52 5.56 0.09 -11.40 16 12 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 13 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 14 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 15 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 16 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 18 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.10 -1.18 2.90 -90.61 -0.26 -1.44 16 23 C -0.14 -1.40 8.78 37.16 0.33 -1.07 16 24 C -0.15 -1.50 7.96 37.16 0.30 -1.21 16 25 C -0.07 -0.66 6.84 -39.61 -0.27 -0.93 16 26 C -0.21 -1.80 9.04 -39.44 -0.36 -2.16 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.27 7.67 -51.93 -0.40 -0.12 16 29 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.09 8.03 -52.48 -0.42 0.67 16 32 H 0.40 4.33 6.85 -40.82 -0.28 4.05 16 33 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.52 6.64 -51.93 -0.34 0.18 16 40 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.54 5.62 -51.93 -0.29 0.25 16 43 H 0.13 1.00 6.09 -52.49 -0.32 0.68 16 44 H 0.13 0.86 6.30 -52.48 -0.33 0.53 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -34.39 371.55 -8.23 -42.62 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.49 Total: 2.21 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.48 Total: -12.95 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.50 Total: -35.53 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.12 Total: -14.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.39 -8.23 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047904287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.677 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds