Wall clock time and date at job start Tue Mar 31 2020 14:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35906 * 116.99918 * 2 1 4 4 C 1.38735 * 120.05153 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94158 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05735 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.94242 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47227 * 340.00707 * 7 6 5 9 9 N 1.46496 * 109.46850 * 219.99673 * 7 6 5 10 10 C 1.34774 * 119.99544 * 155.00384 * 9 7 6 11 11 O 1.21279 * 120.00472 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 S 1.81002 * 109.47200 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99878 * 179.97438 * 13 12 10 15 15 H 1.08006 * 120.00031 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00096 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99737 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47409 * 89.99815 * 18 16 14 20 20 H 1.48504 * 109.46732 * 209.99538 * 18 16 14 21 21 H 1.48503 * 109.47095 * 329.99265 * 18 16 14 22 22 C 1.53003 * 109.46565 * 99.99867 * 7 6 5 23 23 C 1.52996 * 109.47657 * 299.99903 * 22 7 6 24 24 C 1.53010 * 109.46988 * 60.00203 * 22 7 6 25 25 C 1.38261 * 120.10990 * 0.27500 * 6 5 4 26 26 C 1.38146 * 120.05316 * 359.45125 * 25 6 5 27 27 H 1.08997 * 109.47573 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47164 * 300.00508 * 1 2 3 29 29 H 1.09007 * 109.46898 * 59.99963 * 1 2 3 30 30 H 1.08002 * 120.02782 * 359.95126 * 4 3 2 31 31 H 1.08003 * 119.97314 * 180.02562 * 5 4 3 32 32 H 0.96994 * 120.00700 * 335.00503 * 9 7 6 33 33 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 34 34 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 35 35 H 0.97001 * 119.99701 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.46755 * 179.97438 * 22 7 6 37 37 H 1.08994 * 109.47414 * 180.02562 * 23 22 7 38 38 H 1.09001 * 109.46909 * 300.00277 * 23 22 7 39 39 H 1.09007 * 109.47089 * 59.99993 * 23 22 7 40 40 H 1.08992 * 109.47213 * 59.99522 * 24 22 7 41 41 H 1.09000 * 109.46656 * 179.97438 * 24 22 7 42 42 H 1.08997 * 109.46905 * 299.99336 * 24 22 7 43 43 H 1.07998 * 119.96862 * 179.70906 * 25 6 5 44 44 H 1.08005 * 120.02578 * 180.28157 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6758 -0.0016 7 6 3.9862 5.0185 -0.0016 8 1 5.0112 4.9040 0.3510 9 7 3.2641 5.9345 0.8847 10 6 3.9078 6.9780 1.4444 11 8 5.0847 7.1589 1.2139 12 6 3.1652 7.9200 2.3567 13 16 4.2947 9.2065 2.9444 14 6 3.1956 10.1388 3.9580 15 1 2.1631 9.8370 4.0549 16 6 3.6565 11.2618 4.6313 17 7 4.9147 11.6299 4.5128 18 14 2.4914 12.2497 5.7064 19 1 2.5207 11.7135 7.0909 20 1 2.9152 13.6729 5.7177 21 1 1.1123 12.1482 5.1653 22 6 3.9963 5.5856 -1.4226 23 6 4.7503 4.6290 -2.3483 24 6 2.5575 5.7464 -1.9178 25 6 1.9212 3.6048 0.0031 26 6 1.2916 2.3751 -0.0021 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.0208 0.3799 0.0018 31 1 5.1346 2.5749 0.0000 32 1 2.3228 5.7901 1.0688 33 1 2.3418 8.3807 1.8109 34 1 2.7714 7.3658 3.2087 35 1 5.2368 12.4144 4.9836 36 1 4.4908 6.5570 -1.4226 37 1 4.7579 5.0333 -3.3605 38 1 5.7753 4.5145 -1.9956 39 1 4.2554 3.6577 -2.3483 40 1 2.0203 6.4279 -1.2583 41 1 2.5647 6.1509 -2.9299 42 1 2.0626 4.7752 -1.9177 43 1 1.3344 4.5114 0.0065 44 1 0.2130 2.3202 -0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047904287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:05 Heat of formation + Delta-G solvation = -80.861428 kcal Electronic energy + Delta-G solvation = -24647.491839 eV Core-core repulsion = 21076.217951 eV Total energy + Delta-G solvation = -3571.273888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62656 -40.60320 -39.05335 -36.82406 -34.58582 -34.38902 -32.13340 -31.60831 -30.49032 -28.27194 -28.05955 -27.67283 -26.32783 -23.64016 -22.77279 -21.85210 -20.47402 -19.90621 -19.10516 -18.03998 -17.61046 -16.98406 -16.87496 -16.65466 -16.50520 -16.10047 -15.98057 -15.70524 -15.14387 -14.85011 -14.66174 -14.50188 -14.35698 -14.26996 -13.57933 -13.53847 -13.35304 -13.15957 -12.93202 -12.89371 -12.88003 -12.62276 -12.55397 -12.34425 -11.90579 -11.87663 -11.72652 -11.71296 -11.47219 -11.13886 -10.93286 -10.26817 -10.10274 -9.92164 -9.07815 -8.65711 -8.34186 -6.11927 0.36465 0.38372 1.27592 1.42649 1.47536 1.57867 1.63035 2.25739 2.29888 2.39667 2.77619 2.99920 3.32676 3.59776 3.80830 3.89396 3.95165 4.04928 4.11926 4.24386 4.30116 4.31196 4.40235 4.42067 4.50313 4.50927 4.61791 4.73645 4.76541 4.81086 4.82587 4.99286 5.01034 5.06824 5.20681 5.24562 5.33162 5.36812 5.41814 5.42273 5.46490 5.69072 5.77491 6.20279 6.44760 6.49944 7.07111 7.24835 8.74988 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.002605 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.319673 B =10744.442410 C =11591.640656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.158 4.158 5 C -0.070 4.070 6 C -0.125 4.125 7 C 0.199 3.801 8 H 0.073 0.927 9 N -0.707 5.707 10 C 0.537 3.463 11 O -0.561 6.561 12 C -0.130 4.130 13 S -0.149 6.149 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.012 3.988 17 N -0.911 5.911 18 Si 0.999 3.001 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.258 1.258 22 C -0.102 4.102 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.073 4.073 26 C -0.204 4.204 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.411 0.589 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.140 0.860 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 -23.587 -12.979 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.071 3.929 4 C -0.177 4.177 5 C -0.088 4.088 6 C -0.126 4.126 7 C 0.094 3.906 8 H 0.091 0.909 9 N -0.361 5.361 10 C 0.323 3.677 11 O -0.439 6.439 12 C -0.281 4.281 13 S 0.078 5.922 14 C -0.694 4.694 15 H 0.101 0.899 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.181 1.181 22 C -0.122 4.122 23 C -0.197 4.197 24 C -0.203 4.203 25 C -0.091 4.091 26 C -0.223 4.223 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.249 0.751 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.157 0.843 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.074 -23.381 -13.323 28.734 hybrid contribution -1.997 0.759 1.053 2.382 sum -12.070 -22.622 -12.270 28.425 Atomic orbital electron populations 1.23333 0.76525 1.05492 1.02285 1.86052 1.23395 1.26927 1.88610 1.19249 0.92641 0.84729 0.96242 1.20558 0.91807 0.98780 1.06531 1.20933 1.00501 0.90642 0.96772 1.19614 0.94241 0.93460 1.05280 1.19739 0.95487 0.85677 0.89685 0.90885 1.45900 1.14446 1.27215 1.48497 1.20028 0.86783 0.81282 0.79653 1.90688 1.17599 1.73390 1.62207 1.23378 1.03123 0.99710 1.01909 1.85574 1.17447 1.28770 1.60387 1.23203 0.98334 1.14729 1.33087 0.89938 1.26133 0.97478 0.97754 0.97858 1.70186 1.16415 1.25926 1.42248 0.84953 0.78167 0.76855 0.77999 1.19353 1.20324 1.18143 1.21403 0.98093 0.98920 0.93772 1.21770 0.99774 0.99262 0.98871 1.21945 0.94974 1.02416 1.01010 1.20926 0.93452 0.97971 0.96742 1.21408 1.01160 0.91543 1.08168 0.86551 0.91849 0.91549 0.84300 0.84465 0.75094 0.87212 0.87415 0.92017 0.93224 0.91849 0.92895 0.91413 0.92897 0.92296 0.90760 0.84258 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.45 10.50 -92.49 -0.97 -6.42 16 3 C 0.12 2.00 6.69 22.50 0.15 2.15 16 4 C -0.16 -2.76 9.99 22.36 0.22 -2.54 16 5 C -0.07 -1.26 8.70 22.25 0.19 -1.07 16 6 C -0.13 -2.36 3.80 -19.85 -0.08 -2.43 16 7 C 0.20 4.72 2.08 44.25 0.09 4.81 16 8 H 0.07 2.09 7.44 -2.39 -0.02 2.08 16 9 N -0.71 -18.32 4.26 -446.10 -1.90 -20.22 16 10 C 0.54 19.86 7.81 87.66 0.68 20.54 16 11 O -0.56 -25.94 15.52 -3.02 -0.05 -25.98 16 12 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 13 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 14 C -0.55 -31.19 9.50 67.95 0.65 -30.55 16 15 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 16 C 0.01 0.71 5.49 84.86 0.47 1.18 16 17 N -0.91 -56.18 13.22 21.65 0.29 -55.90 16 18 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 22 C -0.10 -2.30 2.90 -10.79 -0.03 -2.33 16 23 C -0.14 -2.59 8.78 71.98 0.63 -1.95 16 24 C -0.15 -2.66 7.96 71.99 0.57 -2.08 16 25 C -0.07 -1.14 6.84 22.25 0.15 -0.99 16 26 C -0.20 -2.98 9.04 22.36 0.20 -2.77 16 27 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.43 7.67 -2.39 -0.02 0.42 16 29 H 0.07 0.40 7.66 -2.38 -0.02 0.39 16 30 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.14 2.21 8.03 -2.91 -0.02 2.19 16 32 H 0.41 8.08 6.85 -92.71 -0.63 7.44 16 33 H 0.11 3.89 8.14 -2.39 -0.02 3.88 16 34 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.13 6.64 -2.38 -0.02 1.11 16 40 H 0.05 0.98 7.60 -2.39 -0.02 0.97 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.14 5.62 -2.39 -0.01 1.12 16 43 H 0.14 1.75 6.09 -2.91 -0.02 1.73 16 44 H 0.15 1.45 6.30 -2.91 -0.02 1.44 16 Total: -1.00 -76.68 371.55 4.07 -72.62 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.37 Total: 21.21 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 5.46 Total: -21.49 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -1.61 Total: -76.12 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.02 Total: -32.41 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -76.68 4.07 -72.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047904287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.244 kcal (2) G-P(sol) polarization free energy of solvation -76.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds