Wall clock time and date at job start Tue Mar 31 2020 13:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.53001 * 109.46925 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.47043 * 65.00683 * 10 9 8 12 12 C 1.34776 * 119.99985 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99781 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00054 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47134 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00051 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00029 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00083 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99813 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48489 * 109.47379 * 89.99903 * 20 18 16 22 22 H 1.48504 * 109.46845 * 209.99911 * 20 18 16 23 23 H 1.48498 * 109.47019 * 329.99567 * 20 18 16 24 24 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 25 25 C 1.38139 * 119.94262 * 359.97438 * 24 7 6 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 33 33 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 35 35 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 36 36 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 37 37 H 1.08998 * 109.46795 * 185.00518 * 10 9 8 38 38 H 1.09003 * 109.46964 * 305.00189 * 10 9 8 39 39 H 0.96996 * 119.99964 * 359.97438 * 11 10 9 40 40 H 1.08998 * 109.47398 * 299.99923 * 14 12 11 41 41 H 1.08996 * 109.47029 * 60.00236 * 14 12 11 42 42 H 0.96995 * 119.99617 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.02456 * 179.97438 * 24 7 6 44 44 H 1.07998 * 119.97261 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6212 -2.9623 -6.9865 11 7 3.0364 -4.3049 -6.9478 12 6 3.4162 -5.2316 -7.8497 13 8 4.2418 -4.9539 -8.6936 14 6 2.8150 -6.6129 -7.8095 15 16 3.5221 -7.6176 -9.1387 16 6 2.6683 -9.1341 -8.8634 17 1 1.9554 -9.2135 -8.0560 18 6 2.9112 -10.2263 -9.6847 19 7 3.7790 -10.1290 -10.6697 20 14 2.0055 -11.8338 -9.3932 21 1 0.7437 -11.8402 -10.1760 22 1 2.8608 -12.9690 -9.8236 23 1 1.6921 -11.9704 -7.9481 24 6 3.2885 -2.4877 -2.2287 25 6 2.8276 -1.8341 -1.1023 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.0679 0.6351 -2.5831 34 1 1.8946 -0.5164 -4.5955 35 1 1.9356 -2.1162 -5.9460 36 1 3.3897 -1.0896 -5.9464 37 1 3.4033 -2.4987 -7.9486 38 1 4.7008 -3.0321 -6.8531 39 1 2.3758 -4.5269 -6.2731 40 1 3.0336 -7.0765 -6.8476 41 1 1.7354 -6.5433 -7.9423 42 1 3.9489 -10.8924 -11.2434 43 1 3.9087 -3.3660 -2.1281 44 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048500385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:34 Heat of formation + Delta-G solvation = -69.252689 kcal Electronic energy + Delta-G solvation = -23255.668207 eV Core-core repulsion = 19684.897711 eV Total energy + Delta-G solvation = -3570.770496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59159 -39.21735 -38.38341 -35.39406 -34.42229 -32.41465 -31.42069 -30.77750 -29.21228 -28.08279 -27.55375 -25.47700 -23.96438 -23.56839 -21.86581 -20.47531 -20.38412 -18.62420 -17.86954 -16.76195 -16.61477 -16.10289 -15.74250 -15.40854 -15.17302 -14.79061 -14.78814 -14.58547 -13.99158 -13.89726 -13.74223 -13.71421 -13.24493 -13.07376 -12.93082 -12.80059 -12.62290 -12.41944 -12.02025 -11.80255 -11.65445 -11.46955 -11.17810 -11.08425 -11.05080 -11.01109 -10.90717 -10.74628 -9.80379 -9.41502 -9.31397 -9.05897 -8.91429 -8.36421 -8.22196 -6.48458 -6.20348 -3.90713 1.02903 1.10975 2.83596 3.04382 3.11064 3.23441 3.28948 3.33358 3.43115 3.72809 4.21808 4.29146 4.32756 4.48671 4.54610 4.71513 4.72820 4.78815 4.88749 5.01745 5.02041 5.14199 5.14828 5.18033 5.20199 5.25010 5.40942 5.45127 5.49340 5.56544 5.60726 5.70585 5.78058 5.80441 5.81782 5.91601 5.99434 6.06576 6.16595 6.32874 6.45787 6.57262 7.12032 7.61071 7.69779 8.36739 8.60822 9.25000 10.87118 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.001843 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.935058 B =15190.642866 C =16035.561378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.118 4.118 5 C -0.075 4.075 6 C -0.207 4.207 7 C 0.128 3.872 8 O -0.310 6.310 9 C 0.048 3.952 10 C 0.124 3.876 11 N -0.736 5.736 12 C 0.533 3.467 13 O -0.519 6.519 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.148 4.148 25 C -0.078 4.078 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.401 0.599 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.131 0.869 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 23.749 21.620 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.118 4.118 5 C -0.093 4.093 6 C -0.226 4.226 7 C 0.083 3.917 8 O -0.224 6.224 9 C -0.027 4.027 10 C 0.000 4.000 11 N -0.392 5.392 12 C 0.319 3.681 13 O -0.393 6.393 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.167 4.167 25 C -0.096 4.096 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.235 0.765 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.481 23.965 20.022 31.548 hybrid contribution -1.970 -1.263 1.343 2.698 sum -6.451 22.702 21.365 31.835 Atomic orbital electron populations 1.21870 0.94452 1.02075 1.01821 1.20058 0.95838 0.95909 0.95313 1.21866 1.01265 0.95228 1.01818 1.19757 1.00313 0.97066 0.94654 1.20737 0.98258 0.98935 0.91378 1.21250 1.03419 0.98063 0.99848 1.19033 0.93947 0.91685 0.87047 1.86158 1.70676 1.52800 1.12718 1.23138 1.00183 0.97990 0.81393 1.21321 0.99360 0.82934 0.96362 1.45942 1.46212 1.11878 1.35137 1.20313 0.81576 0.85989 0.80231 1.90705 1.32183 1.80290 1.36149 1.23524 1.04122 0.95544 1.07182 1.85380 1.56027 1.06795 1.35169 1.22875 1.28522 0.97524 1.19446 0.90916 1.24994 0.95283 0.98829 0.94487 1.70019 1.32224 1.31346 1.16709 0.86164 0.79276 0.81416 0.78628 1.20288 1.20747 1.19693 1.20474 1.04243 1.02477 0.89504 1.20875 0.96317 0.94472 0.97972 0.92470 0.92467 0.92538 0.90549 0.92555 0.92466 0.92523 0.86015 0.85485 0.91177 0.90389 0.89331 0.90384 0.76513 0.89138 0.89223 0.92196 0.85072 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.00 37.16 0.33 -0.43 16 2 C -0.05 -0.31 3.09 -91.77 -0.28 -0.59 16 3 C -0.14 -0.74 9.01 37.16 0.33 -0.41 16 4 C -0.12 -0.89 4.78 -104.60 -0.50 -1.39 16 5 C -0.08 -0.57 8.70 -39.60 -0.34 -0.92 16 6 C -0.21 -1.74 9.04 -39.44 -0.36 -2.09 16 7 C 0.13 1.28 6.69 -39.22 -0.26 1.01 16 8 O -0.31 -3.31 10.08 -19.44 -0.20 -3.50 16 9 C 0.05 0.41 4.87 37.16 0.18 0.59 16 10 C 0.12 1.40 6.06 -4.04 -0.02 1.37 16 11 N -0.74 -10.08 5.50 -60.29 -0.33 -10.41 16 12 C 0.53 10.09 7.85 -10.99 -0.09 10.01 16 13 O -0.52 -11.87 15.86 5.55 0.09 -11.79 16 14 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 17 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 20 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.15 -1.40 9.99 -39.43 -0.39 -1.80 16 25 C -0.08 -0.63 9.66 -39.61 -0.38 -1.01 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.29 7.37 -51.93 -0.38 -0.09 16 29 H 0.08 0.40 7.87 -51.93 -0.41 0.00 16 30 H 0.06 0.28 7.40 -51.93 -0.38 -0.10 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.12 0.73 7.09 -52.49 -0.37 0.35 16 34 H 0.13 0.85 6.30 -52.48 -0.33 0.52 16 35 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 36 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 4.58 8.47 -40.82 -0.35 4.24 16 40 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.13 0.77 7.94 -52.49 -0.42 0.36 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -34.94 383.09 -9.32 -44.26 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.79 Total: 0.26 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.36 Total: -11.67 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.40 Total: -36.01 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.11 Total: -15.29 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.94 -9.32 -44.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048500385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.990 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds