Wall clock time and date at job start Tue Mar 31 2020 13:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.53001 * 109.46925 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.47043 * 65.00683 * 10 9 8 12 12 C 1.34776 * 119.99985 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99781 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00054 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47134 * 179.97438 * 14 12 11 16 16 C 1.76196 * 100.00051 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00029 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00083 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99813 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48489 * 109.47379 * 89.99903 * 20 18 16 22 22 H 1.48504 * 109.46845 * 209.99911 * 20 18 16 23 23 H 1.48498 * 109.47019 * 329.99567 * 20 18 16 24 24 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 25 25 C 1.38139 * 119.94262 * 359.97438 * 24 7 6 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 33 33 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 35 35 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 36 36 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 37 37 H 1.08998 * 109.46795 * 185.00518 * 10 9 8 38 38 H 1.09003 * 109.46964 * 305.00189 * 10 9 8 39 39 H 0.96996 * 119.99964 * 359.97438 * 11 10 9 40 40 H 1.08998 * 109.47398 * 299.99923 * 14 12 11 41 41 H 1.08996 * 109.47029 * 60.00236 * 14 12 11 42 42 H 0.96995 * 119.99617 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.02456 * 179.97438 * 24 7 6 44 44 H 1.07998 * 119.97261 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6212 -2.9623 -6.9865 11 7 3.0364 -4.3049 -6.9478 12 6 3.4162 -5.2316 -7.8497 13 8 4.2418 -4.9539 -8.6936 14 6 2.8150 -6.6129 -7.8095 15 16 3.5221 -7.6176 -9.1387 16 6 2.6683 -9.1341 -8.8634 17 1 1.9554 -9.2135 -8.0560 18 6 2.9112 -10.2263 -9.6847 19 7 3.7790 -10.1290 -10.6697 20 14 2.0055 -11.8338 -9.3932 21 1 0.7437 -11.8402 -10.1760 22 1 2.8608 -12.9690 -9.8236 23 1 1.6921 -11.9704 -7.9481 24 6 3.2885 -2.4877 -2.2287 25 6 2.8276 -1.8341 -1.1023 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.0679 0.6351 -2.5831 34 1 1.8946 -0.5164 -4.5955 35 1 1.9356 -2.1162 -5.9460 36 1 3.3897 -1.0896 -5.9464 37 1 3.4033 -2.4987 -7.9486 38 1 4.7008 -3.0321 -6.8531 39 1 2.3758 -4.5269 -6.2731 40 1 3.0336 -7.0765 -6.8476 41 1 1.7354 -6.5433 -7.9423 42 1 3.9489 -10.8924 -11.2434 43 1 3.9087 -3.3660 -2.1281 44 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048500385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:34 Heat of formation + Delta-G solvation = -91.209692 kcal Electronic energy + Delta-G solvation = -23256.620334 eV Core-core repulsion = 19684.897711 eV Total energy + Delta-G solvation = -3571.722623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27679 -40.55232 -39.11540 -36.20911 -35.36825 -34.58841 -32.18816 -31.84149 -30.14562 -29.09894 -27.93884 -27.65624 -24.74961 -24.15937 -22.58977 -21.86738 -20.91853 -19.86585 -19.28921 -17.94450 -17.68154 -17.07036 -16.88301 -16.55246 -16.45850 -16.30848 -15.70073 -15.43827 -15.18494 -14.74287 -14.64340 -14.47482 -14.31841 -14.25936 -14.00521 -13.58818 -13.40347 -13.24101 -13.17132 -12.97153 -12.89062 -12.74593 -12.58559 -12.14488 -12.01960 -11.73924 -11.66447 -11.65667 -11.42707 -11.14656 -10.98631 -10.29004 -10.17575 -9.92673 -8.99906 -8.67365 -8.35106 -6.13308 0.41870 0.48240 1.26189 1.42273 1.46311 1.56980 1.58887 2.14271 2.26121 2.30276 2.81772 2.98954 3.31377 3.65304 3.80883 3.88970 3.96492 3.98128 4.06517 4.19256 4.27671 4.30019 4.37184 4.43231 4.46308 4.49890 4.58491 4.62083 4.77383 4.82854 4.84275 4.98937 5.03337 5.11828 5.16313 5.35519 5.36421 5.39905 5.41491 5.42626 5.48067 5.76688 5.87693 6.19461 6.44400 6.46207 7.06108 7.19919 8.74179 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.001843 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.935058 B =15190.642866 C =16035.561378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.119 4.119 5 C -0.080 4.080 6 C -0.209 4.209 7 C 0.109 3.891 8 O -0.331 6.331 9 C 0.055 3.945 10 C 0.121 3.879 11 N -0.712 5.712 12 C 0.535 3.465 13 O -0.565 6.565 14 C -0.130 4.130 15 S -0.149 6.149 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.259 1.259 24 C -0.167 4.167 25 C -0.085 4.085 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.415 0.585 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.126 0.874 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 24.748 23.611 35.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.120 4.120 5 C -0.098 4.098 6 C -0.228 4.228 7 C 0.064 3.936 8 O -0.246 6.246 9 C -0.020 4.020 10 C -0.002 4.002 11 N -0.366 5.366 12 C 0.320 3.680 13 O -0.444 6.444 14 C -0.282 4.282 15 S 0.078 5.922 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.183 1.183 24 C -0.186 4.186 25 C -0.103 4.103 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.252 0.748 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.589 25.002 22.065 33.991 hybrid contribution -1.330 -1.426 0.836 2.122 sum -7.919 23.576 22.902 33.809 Atomic orbital electron populations 1.21858 0.93961 1.01788 1.02463 1.20097 0.96181 0.96161 0.94644 1.21853 1.00869 0.94828 1.02461 1.20032 0.99665 0.96760 0.95509 1.21013 0.98181 0.99361 0.91198 1.21470 1.02846 0.97466 1.01010 1.19196 0.95013 0.92589 0.86806 1.86106 1.71360 1.53652 1.13462 1.23158 1.01097 0.98092 0.79668 1.21503 0.98671 0.81723 0.98300 1.45733 1.45386 1.11963 1.33565 1.20035 0.81143 0.86115 0.80668 1.90693 1.34367 1.80945 1.38363 1.23371 1.04774 0.95415 1.04608 1.85540 1.58035 1.09034 1.39613 1.23212 1.28662 0.97834 1.19866 0.89968 1.26134 0.96039 1.03031 0.93929 1.70182 1.33962 1.32685 1.17877 0.84945 0.77881 0.75916 0.79186 1.19217 1.20235 1.18293 1.20629 1.04908 1.02891 0.90166 1.21102 0.96281 0.94651 0.98268 0.93203 0.91432 0.92333 0.90125 0.92344 0.91432 0.93130 0.84236 0.83726 0.89263 0.87991 0.88454 0.91842 0.74848 0.87553 0.87096 0.91962 0.85567 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.00 71.98 0.65 -0.58 16 2 C -0.05 -0.50 3.09 -11.54 -0.04 -0.54 16 3 C -0.14 -1.18 9.01 71.98 0.65 -0.53 16 4 C -0.12 -1.60 4.78 -19.85 -0.09 -1.70 16 5 C -0.08 -1.05 8.70 22.26 0.19 -0.85 16 6 C -0.21 -3.07 9.04 22.36 0.20 -2.87 16 7 C 0.11 2.04 6.69 22.51 0.15 2.19 16 8 O -0.33 -6.64 10.08 -92.48 -0.93 -7.57 16 9 C 0.05 0.79 4.87 71.98 0.35 1.14 16 10 C 0.12 2.57 6.06 86.38 0.52 3.09 16 11 N -0.71 -18.49 5.50 -463.06 -2.55 -21.04 16 12 C 0.53 20.08 7.85 87.66 0.69 20.77 16 13 O -0.57 -26.39 15.86 -3.06 -0.05 -26.44 16 14 C -0.13 -5.29 6.16 71.23 0.44 -4.85 16 15 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 16 C -0.55 -31.67 9.50 67.96 0.65 -31.03 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.77 5.49 84.86 0.47 1.24 16 19 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 20 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.17 -3.09 9.99 22.37 0.22 -2.87 16 25 C -0.09 -1.28 9.66 22.25 0.22 -1.07 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.47 7.37 -2.39 -0.02 0.46 16 29 H 0.08 0.71 7.87 -2.39 -0.02 0.69 16 30 H 0.06 0.45 7.40 -2.39 -0.02 0.44 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.14 1.28 7.09 -2.91 -0.02 1.26 16 34 H 0.15 1.49 6.30 -2.91 -0.02 1.47 16 35 H 0.09 0.98 7.66 -2.39 -0.02 0.96 16 36 H 0.10 1.04 7.66 -2.38 -0.02 1.02 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.41 8.57 8.47 -92.71 -0.79 7.79 16 40 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 41 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.14 1.58 7.94 -2.91 -0.02 1.55 16 Total: -1.00 -77.67 383.09 3.10 -74.57 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.21 Total: 18.57 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 5.26 Total: -18.45 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -2.26 Total: -77.08 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.98 Total: -34.01 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -77.67 3.10 -74.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048500385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.638 kcal (2) G-P(sol) polarization free energy of solvation -77.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds