Wall clock time and date at job start Tue Mar 31 2020 14:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47079 * 2 1 4 4 C 1.53001 * 109.47302 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47159 * 180.02562 * 4 3 2 6 6 C 1.35965 * 116.99975 * 179.97438 * 5 4 3 7 7 C 1.38746 * 119.98664 * 0.02593 * 6 5 4 8 8 C 1.38062 * 120.01661 * 179.97438 * 7 6 5 9 9 C 1.38864 * 119.98543 * 0.02562 * 8 7 6 10 10 N 1.40115 * 120.01773 * 180.25716 * 9 8 7 11 11 C 1.34786 * 119.99600 * 325.27166 * 10 9 8 12 12 O 1.21294 * 120.00170 * 4.50313 * 11 10 9 13 13 C 1.50694 * 119.99738 * 184.50286 * 11 10 9 14 14 S 1.80998 * 109.46943 * 180.02562 * 13 11 10 15 15 C 1.76205 * 100.00053 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99657 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99853 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00344 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99661 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47034 * 90.00469 * 19 17 15 21 21 H 1.48493 * 109.46989 * 210.00557 * 19 17 15 22 22 H 1.48499 * 109.47160 * 330.00449 * 19 17 15 23 23 C 1.38827 * 119.96959 * 359.97438 * 9 8 7 24 24 C 1.50704 * 120.00636 * 180.02562 * 23 9 8 25 25 C 1.38111 * 119.98657 * 359.97438 * 23 9 8 26 26 H 1.09000 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47651 * 299.99628 * 1 2 3 28 28 H 1.08997 * 109.47156 * 59.99836 * 1 2 3 29 29 H 1.08998 * 109.47428 * 240.00757 * 2 1 3 30 30 H 1.08997 * 109.47156 * 120.00164 * 2 1 3 31 31 H 1.08998 * 109.46834 * 60.00377 * 3 2 1 32 32 H 1.08997 * 109.47260 * 300.00100 * 3 2 1 33 33 H 1.08996 * 109.47257 * 59.99731 * 4 3 2 34 34 H 1.09006 * 109.46897 * 299.99950 * 4 3 2 35 35 H 1.08001 * 119.99361 * 359.97438 * 7 6 5 36 36 H 1.08000 * 120.00669 * 180.02562 * 8 7 6 37 37 H 0.96993 * 120.00328 * 145.26897 * 10 9 8 38 38 H 1.09000 * 109.47609 * 299.99913 * 13 11 10 39 39 H 1.08996 * 109.47310 * 60.00239 * 13 11 10 40 40 H 0.97006 * 120.00082 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46833 * 90.00216 * 24 23 9 42 42 H 1.08997 * 109.47417 * 210.00217 * 24 23 9 43 43 H 1.08998 * 109.47295 * 330.00329 * 24 23 9 44 44 H 1.07991 * 119.99111 * 179.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3942 2.9681 0.0000 7 6 6.2391 1.8676 -0.0010 8 6 7.6079 2.0478 -0.0015 9 6 8.1390 3.3309 -0.0003 10 7 9.5281 3.5146 -0.0062 11 6 10.3249 2.6500 0.6527 12 8 9.8480 1.6682 1.1819 13 6 11.8083 2.9030 0.7319 14 16 12.5975 1.5745 1.6745 15 6 14.2753 2.1089 1.6105 16 1 14.5324 3.0200 1.0906 17 6 15.2664 1.3594 2.2291 18 7 14.9530 0.2493 2.8631 19 14 17.0452 1.9256 2.1606 20 1 17.3303 2.8039 3.3235 21 1 17.9428 0.7434 2.2014 22 1 17.2766 2.6796 0.9024 23 6 7.2930 4.4316 0.0007 24 6 7.8685 5.8244 0.0013 25 6 5.9239 4.2499 0.0001 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 5.8260 0.8697 -0.0014 36 1 8.2655 1.1911 -0.0027 37 1 9.9162 4.2638 -0.4845 38 1 12.2263 2.9318 -0.2743 39 1 11.9882 3.8570 1.2275 40 1 15.6457 -0.2746 3.2951 41 1 8.0067 6.1609 -1.0262 42 1 7.1850 6.4998 0.5159 43 1 8.8300 5.8201 0.5147 44 1 5.2657 5.1061 0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048809746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:28 Heat of formation + Delta-G solvation = -88.917111 kcal Electronic energy + Delta-G solvation = -23556.649995 eV Core-core repulsion = 19985.026786 eV Total energy + Delta-G solvation = -3571.623209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77117 -40.59608 -38.71986 -36.18938 -35.30380 -34.58962 -33.50614 -31.75818 -30.59572 -29.04145 -27.83249 -27.53270 -24.81619 -24.14675 -22.24612 -21.83456 -21.61467 -19.89805 -18.75305 -18.55305 -18.05104 -17.34257 -17.01667 -16.88241 -16.29306 -16.13297 -15.68565 -15.36072 -15.11968 -14.94449 -14.65984 -14.55316 -14.36529 -14.19865 -13.75343 -13.56664 -13.55720 -13.17273 -13.11811 -12.89793 -12.82429 -12.71036 -12.60783 -12.25949 -12.02487 -11.98679 -11.79144 -11.74601 -11.50439 -11.14832 -11.05861 -10.77759 -10.29601 -9.79707 -8.75566 -8.65200 -8.35283 -6.13542 0.23896 0.33093 1.23620 1.42785 1.45061 1.52919 1.56841 2.12026 2.22121 2.26586 2.72211 2.99332 3.28437 3.71761 3.82717 3.87375 3.90322 3.99898 4.06818 4.13746 4.26086 4.30461 4.32720 4.41362 4.44319 4.47948 4.61585 4.63490 4.83491 4.85571 4.88778 4.91197 4.96362 5.06825 5.22725 5.24032 5.30725 5.35494 5.39089 5.41946 5.42628 5.46039 5.81218 6.19437 6.37303 6.42090 7.06289 7.10722 8.73842 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.002055 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.856776 B =13619.543228 C =14720.367654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.051 3.949 5 O -0.324 6.324 6 C 0.112 3.888 7 C -0.201 4.201 8 C -0.099 4.099 9 C 0.093 3.907 10 N -0.652 5.652 11 C 0.533 3.467 12 O -0.544 6.544 13 C -0.128 4.128 14 S -0.148 6.148 15 C -0.547 4.547 16 H 0.085 0.915 17 C 0.014 3.986 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.257 1.257 23 C -0.066 4.066 24 C -0.115 4.115 25 C -0.139 4.139 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.426 0.574 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.271 0.729 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.417 9.588 -9.837 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.024 4.024 5 O -0.238 6.238 6 C 0.066 3.934 7 C -0.221 4.221 8 C -0.119 4.119 9 C -0.001 4.001 10 N -0.300 5.300 11 C 0.321 3.679 12 O -0.420 6.420 13 C -0.279 4.279 14 S 0.080 5.920 15 C -0.694 4.694 16 H 0.103 0.897 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.181 1.181 23 C -0.068 4.068 24 C -0.171 4.171 25 C -0.158 4.158 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.266 0.734 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.254 7.972 -8.858 27.925 hybrid contribution 1.958 0.778 -0.510 2.167 sum -23.296 8.749 -9.368 26.590 Atomic orbital electron populations 1.21747 0.94574 1.02305 1.02225 1.21446 0.96911 0.94834 1.02752 1.21555 0.91147 0.98554 1.03703 1.23054 0.96392 0.81053 1.01876 1.86017 1.18404 1.30579 1.88805 1.19067 0.82536 0.94238 0.97574 1.21211 0.93120 0.99107 1.08620 1.21092 0.95212 0.96891 0.98709 1.17687 0.82881 0.93703 1.05802 1.43221 1.04013 1.30626 1.52124 1.20298 0.88393 0.82300 0.76952 1.90689 1.76073 1.28977 1.46265 1.23355 0.93305 1.05064 1.06201 1.85605 1.04914 1.31702 1.69823 1.23217 0.92418 1.12943 1.40862 0.89686 1.26123 1.04745 0.94461 0.93779 1.70180 1.35682 1.15212 1.33727 0.84950 0.75747 0.77933 0.79336 1.19333 1.20411 1.18100 1.19766 0.91974 0.95657 0.99419 1.20864 1.01699 0.90412 1.04163 1.20340 0.94000 0.95273 1.06224 0.91951 0.92499 0.92291 0.91278 0.91612 0.90978 0.90620 0.91431 0.92055 0.84396 0.86392 0.73428 0.86630 0.86614 0.92004 0.88604 0.89339 0.91244 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.12 -1.28 5.93 30.59 0.18 -1.10 16 3 C -0.11 -1.43 5.58 30.60 0.17 -1.26 16 4 C 0.05 0.86 4.74 71.98 0.34 1.20 16 5 O -0.32 -7.10 10.14 -93.16 -0.94 -8.04 16 6 C 0.11 2.70 6.69 22.50 0.15 2.86 16 7 C -0.20 -5.36 9.03 22.35 0.20 -5.16 16 8 C -0.10 -3.10 8.70 22.38 0.19 -2.90 16 9 C 0.09 2.60 6.29 38.11 0.24 2.84 16 10 N -0.65 -17.58 4.75 -303.38 -1.44 -19.02 16 11 C 0.53 19.64 7.69 87.65 0.67 20.32 16 12 O -0.54 -24.92 13.28 -3.07 -0.04 -24.96 16 13 C -0.13 -4.92 6.16 71.23 0.44 -4.49 16 14 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 15 C -0.55 -30.76 9.50 67.95 0.65 -30.12 16 16 H 0.09 4.41 7.80 -2.91 -0.02 4.38 16 17 C 0.01 0.77 5.49 84.86 0.47 1.24 16 18 N -0.91 -55.69 13.22 21.65 0.29 -55.41 16 19 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 C -0.07 -1.43 5.89 -19.75 -0.12 -1.55 16 24 C -0.12 -1.62 9.47 71.24 0.67 -0.95 16 25 C -0.14 -3.00 9.63 22.35 0.22 -2.78 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 34 H 0.06 1.04 7.66 -2.38 -0.02 1.02 16 35 H 0.14 3.20 6.29 -2.91 -0.02 3.18 16 36 H 0.12 4.34 6.19 -2.91 -0.02 4.32 16 37 H 0.43 8.02 7.84 -92.71 -0.73 7.29 16 38 H 0.12 3.92 8.14 -2.40 -0.02 3.90 16 39 H 0.12 3.94 8.14 -2.40 -0.02 3.92 16 40 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 43 H 0.07 1.01 7.17 -2.39 -0.02 0.99 16 44 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -75.63 380.04 4.19 -71.44 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.27 Total: 22.55 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 5.19 Total: -22.49 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.16 Total: -74.43 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.99 Total: -33.00 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -75.63 4.19 -71.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048809746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.477 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds