Wall clock time and date at job start Tue Mar 31 2020 14:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 C 1.53002 * 109.46705 * 120.00266 * 2 1 3 5 5 O 1.42903 * 109.47006 * 175.00190 * 4 2 1 6 6 C 1.35899 * 116.99930 * 180.02562 * 5 4 2 7 7 C 1.38747 * 120.05586 * 359.97438 * 6 5 4 8 8 C 1.38125 * 119.94590 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05159 * 359.97438 * 8 7 6 10 10 C 1.38243 * 120.11362 * 0.02562 * 9 8 7 11 11 C 1.38163 * 120.05438 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.02715 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47357 * 260.02510 * 12 11 10 14 14 C 1.34772 * 120.00011 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99956 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99906 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47137 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99915 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99663 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99509 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00365 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47084 * 90.00378 * 22 20 18 24 24 H 1.48491 * 109.47339 * 210.00453 * 22 20 18 25 25 H 1.48501 * 109.47069 * 330.00524 * 22 20 18 26 26 H 1.08995 * 109.47046 * 300.00083 * 1 2 3 27 27 H 1.09007 * 109.46700 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46855 * 239.99620 * 2 1 3 30 30 H 1.09000 * 109.46847 * 59.99760 * 3 2 1 31 31 H 1.08998 * 109.46519 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46909 * 299.99928 * 3 2 1 33 33 H 1.08998 * 109.47474 * 54.99835 * 4 2 1 34 34 H 1.08995 * 109.46823 * 294.99855 * 4 2 1 35 35 H 1.08000 * 120.03046 * 0.02562 * 7 6 5 36 36 H 1.07993 * 119.97844 * 179.72247 * 8 7 6 37 37 H 1.08004 * 119.94567 * 179.97438 * 9 8 7 38 38 H 1.08001 * 119.97538 * 179.97438 * 10 9 8 39 39 H 1.09002 * 109.47162 * 20.02710 * 12 11 10 40 40 H 1.09005 * 109.46612 * 140.02285 * 12 11 10 41 41 H 0.97001 * 119.99694 * 359.97438 * 13 12 11 42 42 H 1.09002 * 109.47259 * 300.00107 * 16 14 13 43 43 H 1.08998 * 109.46926 * 59.99805 * 16 14 13 44 44 H 0.97000 * 119.99588 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 3.4641 -0.8239 1.1921 6 6 4.0804 -1.4434 2.2329 7 6 3.3297 -1.9419 3.2879 8 6 3.9584 -2.5707 4.3449 9 6 5.3348 -2.7040 4.3519 10 6 6.0850 -2.2082 3.3019 11 6 5.4608 -1.5784 2.2423 12 6 6.2793 -1.0375 1.0983 13 7 6.4558 0.4073 1.2643 14 6 7.1592 1.1092 0.3538 15 8 7.6456 0.5448 -0.6031 16 6 7.3403 2.5956 0.5243 17 16 8.3234 3.2451 -0.8497 18 6 8.3782 4.9499 -0.4076 19 1 7.8839 5.2911 0.4900 20 6 9.0557 5.8543 -1.2135 21 7 9.0961 7.1279 -0.8835 22 14 9.9100 5.2642 -2.7663 23 1 8.9642 5.3346 -3.9089 24 1 11.0858 6.1278 -3.0432 25 1 10.3592 3.8609 -2.5813 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6053 -1.7199 1.2952 34 1 1.7516 -0.1584 2.1369 35 1 2.2547 -1.8385 3.2828 36 1 3.3750 -2.9550 5.1685 37 1 5.8247 -3.1957 5.1794 38 1 7.1599 -2.3131 3.3099 39 1 7.2547 -1.5239 1.0876 40 1 5.7644 -1.2351 0.1580 41 1 6.0658 0.8588 2.0291 42 1 6.3647 3.0816 0.5351 43 1 7.8552 2.7933 1.4644 44 1 9.5699 7.7599 -1.4465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048819068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:31 Heat of formation + Delta-G solvation = -68.450158 kcal Electronic energy + Delta-G solvation = -24437.054438 eV Core-core repulsion = 20866.318742 eV Total energy + Delta-G solvation = -3570.735695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67758 -39.05761 -38.04953 -35.50380 -34.76041 -32.40623 -31.75539 -30.29600 -29.26013 -27.41406 -26.97944 -25.83137 -25.44935 -22.61575 -21.80895 -20.41382 -20.33142 -18.44257 -17.82954 -16.68265 -16.47082 -16.30492 -16.01741 -15.45865 -15.07968 -14.91886 -14.76151 -14.59501 -14.31414 -13.78547 -13.43802 -13.34313 -13.05150 -12.95959 -12.85896 -12.75305 -12.69727 -12.41087 -11.93743 -11.63144 -11.60028 -11.33652 -11.31497 -11.22518 -10.97767 -10.94704 -10.84988 -10.56020 -9.83628 -9.59725 -9.15350 -8.97499 -8.83794 -8.46286 -8.43307 -6.87056 -6.25770 -3.96709 0.93013 1.13400 2.84358 2.87366 3.08861 3.29708 3.36039 3.52820 3.54416 3.87931 4.34959 4.36557 4.41039 4.46765 4.57236 4.72007 4.73545 4.80612 4.86298 5.01502 5.04119 5.09770 5.13410 5.23828 5.30601 5.39637 5.40943 5.47037 5.56358 5.62773 5.64236 5.80730 5.83406 5.87800 5.96612 6.00159 6.08183 6.14719 6.17049 6.23437 6.48166 6.63110 7.12953 7.74124 7.97530 8.45093 8.60031 9.20691 10.83572 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.003031 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.055307 B = 9236.506864 C =10651.610403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.063 3.937 5 O -0.302 6.302 6 C 0.149 3.851 7 C -0.214 4.214 8 C -0.074 4.074 9 C -0.162 4.162 10 C -0.062 4.062 11 C -0.139 4.139 12 C 0.174 3.826 13 N -0.727 5.727 14 C 0.531 3.469 15 O -0.522 6.522 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.882 5.882 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.896 -20.321 10.553 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.012 4.012 5 O -0.215 6.215 6 C 0.103 3.897 7 C -0.233 4.233 8 C -0.093 4.093 9 C -0.180 4.180 10 C -0.080 4.080 11 C -0.140 4.140 12 C 0.051 3.949 13 N -0.381 5.381 14 C 0.317 3.683 15 O -0.397 6.397 16 C -0.273 4.273 17 S 0.085 5.915 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.232 0.768 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.943 -20.987 8.712 27.758 hybrid contribution -0.668 0.839 1.113 1.546 sum -16.611 -20.148 9.825 27.899 Atomic orbital electron populations 1.21784 0.93864 1.01970 1.02645 1.21133 0.95658 0.97350 0.97203 1.21826 1.02427 0.94469 1.01869 1.22954 0.78533 1.00180 0.99505 1.86159 1.21639 1.72787 1.40900 1.18869 0.91644 0.92143 0.87071 1.21244 1.00137 1.05766 0.96124 1.20978 0.94749 0.96414 0.97136 1.21058 0.93966 1.03425 0.99568 1.21001 1.00146 0.95000 0.91873 1.19307 0.90683 1.05309 0.98703 1.19908 0.98436 0.80881 0.95716 1.45963 1.56368 1.07938 1.27845 1.20240 0.77343 0.88801 0.81913 1.90693 1.47646 1.71255 1.30093 1.23271 1.05123 0.93720 1.05209 1.84771 1.67617 1.08067 1.31079 1.22333 1.40267 0.90100 1.14084 0.89436 1.24713 0.94882 0.94044 0.97691 1.69944 1.41561 1.01770 1.38574 0.86731 0.80170 0.81410 0.83533 1.19227 1.19993 1.15875 0.92376 0.91557 0.92531 0.89981 0.92781 0.91469 0.92248 0.92166 0.91958 0.85480 0.85827 0.85738 0.85023 0.90933 0.90543 0.76799 0.88619 0.88578 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 2 C -0.09 -0.78 3.16 -90.62 -0.29 -1.07 16 3 C -0.15 -1.44 9.09 37.16 0.34 -1.11 16 4 C 0.06 0.52 4.12 37.16 0.15 0.67 16 5 O -0.30 -3.30 8.91 -19.42 -0.17 -3.47 16 6 C 0.15 1.55 6.66 -39.22 -0.26 1.29 16 7 C -0.21 -1.83 9.04 -39.43 -0.36 -2.19 16 8 C -0.07 -0.57 10.04 -39.60 -0.40 -0.97 16 9 C -0.16 -1.28 10.04 -39.56 -0.40 -1.67 16 10 C -0.06 -0.56 9.67 -39.61 -0.38 -0.94 16 11 C -0.14 -1.48 5.26 -104.47 -0.55 -2.03 16 12 C 0.17 2.23 5.46 -5.19 -0.03 2.20 16 13 N -0.73 -10.25 5.55 -61.47 -0.34 -10.59 16 14 C 0.53 9.88 7.85 -10.99 -0.09 9.80 16 15 O -0.52 -11.66 15.86 5.56 0.09 -11.58 16 16 C -0.12 -2.46 6.16 36.01 0.22 -2.23 16 17 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 18 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 19 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 22 Si 0.86 22.06 27.74 -169.99 -4.71 17.35 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.80 7.82 -51.93 -0.41 0.40 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 35 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.13 1.02 8.04 -52.49 -0.42 0.60 16 39 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 40 H 0.08 1.09 7.85 -51.93 -0.41 0.69 16 41 H 0.40 4.80 8.46 -40.82 -0.35 4.45 16 42 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 43 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 44 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -34.36 382.20 -9.00 -43.36 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.93 Total: 1.91 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.48 Total: -10.98 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.43 Total: -36.70 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.08 Total: -15.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.36 -9.00 -43.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048819068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.087 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds