Wall clock time and date at job start Tue Mar 31 2020 14:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 C 1.53002 * 109.46705 * 120.00266 * 2 1 3 5 5 O 1.42903 * 109.47006 * 175.00190 * 4 2 1 6 6 C 1.35899 * 116.99930 * 180.02562 * 5 4 2 7 7 C 1.38747 * 120.05586 * 359.97438 * 6 5 4 8 8 C 1.38125 * 119.94590 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05159 * 359.97438 * 8 7 6 10 10 C 1.38243 * 120.11362 * 0.02562 * 9 8 7 11 11 C 1.38163 * 120.05438 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.02715 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47357 * 260.02510 * 12 11 10 14 14 C 1.34772 * 120.00011 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99956 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99906 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47137 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99915 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99663 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99509 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00365 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47084 * 90.00378 * 22 20 18 24 24 H 1.48491 * 109.47339 * 210.00453 * 22 20 18 25 25 H 1.48501 * 109.47069 * 330.00524 * 22 20 18 26 26 H 1.08995 * 109.47046 * 300.00083 * 1 2 3 27 27 H 1.09007 * 109.46700 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46855 * 239.99620 * 2 1 3 30 30 H 1.09000 * 109.46847 * 59.99760 * 3 2 1 31 31 H 1.08998 * 109.46519 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46909 * 299.99928 * 3 2 1 33 33 H 1.08998 * 109.47474 * 54.99835 * 4 2 1 34 34 H 1.08995 * 109.46823 * 294.99855 * 4 2 1 35 35 H 1.08000 * 120.03046 * 0.02562 * 7 6 5 36 36 H 1.07993 * 119.97844 * 179.72247 * 8 7 6 37 37 H 1.08004 * 119.94567 * 179.97438 * 9 8 7 38 38 H 1.08001 * 119.97538 * 179.97438 * 10 9 8 39 39 H 1.09002 * 109.47162 * 20.02710 * 12 11 10 40 40 H 1.09005 * 109.46612 * 140.02285 * 12 11 10 41 41 H 0.97001 * 119.99694 * 359.97438 * 13 12 11 42 42 H 1.09002 * 109.47259 * 300.00107 * 16 14 13 43 43 H 1.08998 * 109.46926 * 59.99805 * 16 14 13 44 44 H 0.97000 * 119.99588 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 3.4641 -0.8239 1.1921 6 6 4.0804 -1.4434 2.2329 7 6 3.3297 -1.9419 3.2879 8 6 3.9584 -2.5707 4.3449 9 6 5.3348 -2.7040 4.3519 10 6 6.0850 -2.2082 3.3019 11 6 5.4608 -1.5784 2.2423 12 6 6.2793 -1.0375 1.0983 13 7 6.4558 0.4073 1.2643 14 6 7.1592 1.1092 0.3538 15 8 7.6456 0.5448 -0.6031 16 6 7.3403 2.5956 0.5243 17 16 8.3234 3.2451 -0.8497 18 6 8.3782 4.9499 -0.4076 19 1 7.8839 5.2911 0.4900 20 6 9.0557 5.8543 -1.2135 21 7 9.0961 7.1279 -0.8835 22 14 9.9100 5.2642 -2.7663 23 1 8.9642 5.3346 -3.9089 24 1 11.0858 6.1278 -3.0432 25 1 10.3592 3.8609 -2.5813 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6053 -1.7199 1.2952 34 1 1.7516 -0.1584 2.1369 35 1 2.2547 -1.8385 3.2828 36 1 3.3750 -2.9550 5.1685 37 1 5.8247 -3.1957 5.1794 38 1 7.1599 -2.3131 3.3099 39 1 7.2547 -1.5239 1.0876 40 1 5.7644 -1.2351 0.1580 41 1 6.0658 0.8588 2.0291 42 1 6.3647 3.0816 0.5351 43 1 7.8552 2.7933 1.4644 44 1 9.5699 7.7599 -1.4465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048819068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:31 Heat of formation + Delta-G solvation = -89.898444 kcal Electronic energy + Delta-G solvation = -24437.984505 eV Core-core repulsion = 20866.318742 eV Total energy + Delta-G solvation = -3571.665763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43852 -40.45831 -38.76620 -36.17500 -35.96325 -34.67676 -32.79898 -31.06231 -30.57612 -28.09182 -27.89924 -27.60207 -26.67733 -23.27826 -22.56975 -21.82438 -21.04033 -19.94157 -19.06973 -17.95678 -17.54274 -17.22517 -17.08311 -16.95243 -16.48008 -16.26804 -15.72503 -15.39150 -15.33231 -15.04231 -14.93301 -14.67714 -14.28070 -14.05488 -13.86136 -13.56202 -13.36829 -13.33256 -13.30020 -13.02593 -13.00710 -12.67412 -12.38692 -12.22113 -12.05216 -11.98662 -11.86471 -11.58664 -11.50612 -11.17427 -11.10253 -10.54615 -10.15235 -9.90426 -9.14858 -9.00124 -8.51978 -6.22782 0.23495 0.47462 0.99336 1.31267 1.47118 1.56101 1.57211 2.22187 2.23826 2.28808 2.69965 2.86231 2.88998 3.61607 3.73793 3.83094 3.86679 3.91962 4.09306 4.13187 4.19879 4.25019 4.35277 4.44356 4.46282 4.52283 4.57964 4.62357 4.65665 4.74732 4.83054 4.94854 4.98846 5.01955 5.18850 5.32331 5.35519 5.35727 5.38865 5.48742 5.58011 5.70477 5.86157 6.10833 6.41844 6.49225 6.93149 7.17272 8.60621 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.003031 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.055307 B = 9236.506864 C =10651.610403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.061 3.939 5 O -0.326 6.326 6 C 0.134 3.866 7 C -0.217 4.217 8 C -0.070 4.070 9 C -0.162 4.162 10 C -0.066 4.066 11 C -0.157 4.157 12 C 0.179 3.821 13 N -0.703 5.703 14 C 0.536 3.464 15 O -0.563 6.563 16 C -0.110 4.110 17 S -0.172 6.172 18 C -0.529 4.529 19 H 0.061 0.939 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.237 1.237 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.411 0.589 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.147 -22.201 12.060 31.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.014 4.014 5 O -0.240 6.240 6 C 0.088 3.912 7 C -0.235 4.235 8 C -0.088 4.088 9 C -0.180 4.180 10 C -0.085 4.085 11 C -0.158 4.158 12 C 0.056 3.944 13 N -0.356 5.356 14 C 0.322 3.678 15 O -0.442 6.442 16 C -0.261 4.261 17 S 0.055 5.945 18 C -0.677 4.677 19 H 0.079 0.921 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.161 1.161 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.247 0.753 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.224 -22.873 10.266 30.417 hybrid contribution -0.406 1.349 0.808 1.624 sum -17.630 -21.524 11.074 29.945 Atomic orbital electron populations 1.21748 0.91955 1.02955 1.03072 1.21132 0.97166 0.95985 0.96963 1.21807 1.00529 0.95949 1.02216 1.23096 0.77441 1.01195 0.99644 1.86133 1.23078 1.73151 1.41592 1.19052 0.91720 0.92751 0.87648 1.21493 1.01063 1.05310 0.95647 1.21375 0.94958 0.95144 0.97366 1.21375 0.94274 1.02778 0.99617 1.21175 1.00857 0.94691 0.91733 1.19170 0.90814 1.07081 0.98715 1.19883 0.98717 0.79552 0.96245 1.45790 1.54325 1.08654 1.26820 1.19942 0.77655 0.88138 0.82109 1.90679 1.49837 1.71731 1.31954 1.23251 1.04781 0.94814 1.03208 1.84685 1.69422 1.05965 1.34471 1.22462 1.39851 0.92136 1.13244 0.92055 1.25561 0.95539 0.94179 1.00647 1.70018 1.42576 1.02870 1.40063 0.85867 0.79701 0.80988 0.79834 1.18686 1.18184 1.16060 0.91486 0.91611 0.91266 0.91365 0.91926 0.94302 0.92421 0.90568 0.90855 0.83689 0.83021 0.83423 0.84147 0.90906 0.92420 0.75328 0.87291 0.86883 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 71.98 0.66 -0.83 16 2 C -0.09 -1.49 3.16 -10.79 -0.03 -1.52 16 3 C -0.15 -2.89 9.09 71.98 0.65 -2.24 16 4 C 0.06 0.90 4.12 71.98 0.30 1.20 16 5 O -0.33 -6.96 8.91 -92.41 -0.82 -7.78 16 6 C 0.13 2.62 6.66 22.50 0.15 2.77 16 7 C -0.22 -3.12 9.04 22.36 0.20 -2.92 16 8 C -0.07 -0.83 10.04 22.25 0.22 -0.61 16 9 C -0.16 -2.05 10.04 22.28 0.22 -1.83 16 10 C -0.07 -1.07 9.67 22.25 0.22 -0.86 16 11 C -0.16 -3.19 5.26 -19.77 -0.10 -3.29 16 12 C 0.18 4.58 5.46 85.64 0.47 5.05 16 13 N -0.70 -19.53 5.55 -466.78 -2.59 -22.12 16 14 C 0.54 19.92 7.85 87.66 0.69 20.60 16 15 O -0.56 -25.48 15.86 -3.03 -0.05 -25.53 16 16 C -0.11 -4.37 6.16 71.24 0.44 -3.93 16 17 S -0.17 -8.96 18.55 -56.49 -1.05 -10.00 16 18 C -0.53 -31.45 10.04 67.95 0.68 -30.77 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 20 C 0.05 2.75 5.50 84.86 0.47 3.22 16 21 N -0.92 -56.55 13.97 21.65 0.30 -56.25 16 22 Si 0.91 45.71 27.74 68.60 1.90 47.61 16 23 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.96 7.82 -2.39 -0.02 0.94 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 34 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 35 H 0.15 1.49 6.30 -2.91 -0.02 1.47 16 36 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 38 H 0.14 1.93 8.04 -2.91 -0.02 1.91 16 39 H 0.07 1.86 8.00 -2.39 -0.02 1.84 16 40 H 0.06 1.71 7.85 -2.38 -0.02 1.69 16 41 H 0.41 9.48 8.46 -92.71 -0.78 8.70 16 42 H 0.11 4.06 8.14 -2.39 -0.02 4.05 16 43 H 0.11 4.14 8.14 -2.40 -0.02 4.12 16 44 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -75.14 382.20 3.10 -72.04 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.17 Total: 17.98 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 5.23 Total: -15.96 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -2.29 Total: -78.37 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.87 Total: -33.31 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.61 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.00 kcal Total: -75.14 3.10 -72.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048819068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.856 kcal (2) G-P(sol) polarization free energy of solvation -75.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds