Wall clock time and date at job start Tue Mar 31 2020 14:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 C 1.52999 * 109.47438 * 120.00367 * 2 1 3 5 5 C 1.52999 * 109.47147 * 174.99395 * 4 2 1 6 6 S 1.81397 * 109.46959 * 179.97438 * 5 4 2 7 7 C 1.81401 * 102.99689 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.47046 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99665 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00198 * 180.02562 * 8 7 6 11 11 C 1.39916 * 120.00191 * 175.48756 * 10 8 7 12 12 C 1.38965 * 120.03572 * 214.84558 * 11 10 8 13 13 C 1.38161 * 120.06382 * 179.71925 * 12 11 10 14 14 C 1.38167 * 120.14099 * 0.56021 * 13 12 11 15 15 C 1.38918 * 120.06883 * 359.71760 * 14 13 12 16 16 O 1.35757 * 120.02962 * 179.97438 * 15 14 13 17 17 C 1.34825 * 117.00061 * 5.36354 * 16 15 14 18 18 H 1.07995 * 120.00615 * 354.96420 * 17 16 15 19 19 C 1.38655 * 119.99647 * 174.96770 * 17 16 15 20 20 N 1.31556 * 120.00284 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00045 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46973 * 90.00161 * 21 19 17 23 23 H 1.48494 * 109.46882 * 210.00146 * 21 19 17 24 24 H 1.48500 * 109.47136 * 330.00283 * 21 19 17 25 25 C 1.38718 * 120.03632 * 35.12250 * 11 10 8 26 26 H 1.09004 * 109.46354 * 299.99829 * 1 2 3 27 27 H 1.08997 * 109.47069 * 59.99330 * 1 2 3 28 28 H 1.08995 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46591 * 240.00667 * 2 1 3 30 30 H 1.08992 * 109.47323 * 300.00441 * 3 2 1 31 31 H 1.08994 * 109.46841 * 60.00790 * 3 2 1 32 32 H 1.08998 * 109.46697 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46669 * 54.99714 * 4 2 1 34 34 H 1.08992 * 109.47102 * 294.99736 * 4 2 1 35 35 H 1.09006 * 109.46653 * 60.00145 * 5 4 2 36 36 H 1.09002 * 109.47594 * 300.00676 * 5 4 2 37 37 H 1.08996 * 109.47632 * 300.00054 * 7 6 5 38 38 H 1.08999 * 109.47347 * 60.00304 * 7 6 5 39 39 H 0.97007 * 119.99670 * 355.48695 * 10 8 7 40 40 H 1.07991 * 119.96810 * 359.97438 * 12 11 10 41 41 H 1.08004 * 119.93248 * 180.25413 * 13 12 11 42 42 H 1.07999 * 119.97174 * 179.74525 * 14 13 12 43 43 H 0.96998 * 120.00514 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.06729 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1877 6 16 4.1697 -1.6857 2.6691 7 6 5.9658 -1.7175 2.4171 8 6 6.6246 -2.4081 3.5835 9 8 5.9489 -2.8361 4.4952 10 7 7.9646 -2.5490 3.6139 11 6 8.5842 -3.1047 4.7386 12 6 9.8329 -2.6474 5.1419 13 6 10.4428 -3.1917 6.2558 14 6 9.8189 -4.1999 6.9653 15 6 8.5731 -4.6654 6.5637 16 8 7.9610 -5.6564 7.2611 17 6 8.5625 -6.0683 8.3953 18 1 9.5287 -5.6712 8.6691 19 6 7.9405 -7.0020 9.2101 20 7 8.5270 -7.4036 10.3170 21 14 6.2689 -7.6885 8.7368 22 1 6.4509 -8.9043 7.9038 23 1 5.5119 -8.0389 9.9653 24 1 5.5151 -6.6680 7.9650 25 6 7.9553 -4.1168 5.4488 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6055 -1.7198 1.2950 34 1 1.7519 -0.1585 2.1369 35 1 3.9996 0.1674 1.1418 36 1 3.8533 -1.3940 0.2999 37 1 6.1944 -2.2583 1.4989 38 1 6.3401 -0.6967 2.3403 39 1 8.4995 -2.2651 2.8561 40 1 10.3253 -1.8629 4.5866 41 1 11.4115 -2.8319 6.5698 42 1 10.2999 -4.6263 7.8331 43 1 8.0921 -8.0571 10.8869 44 1 6.9866 -4.4767 5.1350 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048951650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:47 Heat of formation + Delta-G solvation = -48.079195 kcal Electronic energy + Delta-G solvation = -23530.161695 eV Core-core repulsion = 19960.309351 eV Total energy + Delta-G solvation = -3569.852344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.26287 -38.75659 -37.29314 -36.68519 -34.23134 -32.34582 -31.15178 -30.81088 -29.47935 -28.10625 -27.60374 -25.19353 -24.19397 -22.65484 -21.37431 -20.52189 -20.27124 -18.17239 -17.75401 -16.99741 -16.49326 -16.06017 -15.66365 -15.57152 -15.21189 -14.78740 -14.62253 -14.46722 -14.03861 -13.89107 -13.64224 -13.60972 -13.14655 -12.96792 -12.75137 -12.66438 -12.35355 -12.28241 -12.24766 -11.88803 -11.63926 -11.23162 -11.19503 -11.06289 -10.99046 -10.98529 -10.82696 -10.20879 -10.09329 -9.93387 -9.72947 -9.28706 -8.83405 -7.87809 -7.79884 -7.32292 -6.38047 -4.04660 1.18827 1.87728 2.22102 2.30381 2.67306 3.10293 3.29312 3.31254 3.50416 4.29840 4.30264 4.38635 4.42236 4.50944 4.54663 4.69365 4.71093 4.86089 4.94623 4.97344 5.12294 5.15797 5.21573 5.23983 5.37781 5.45495 5.55264 5.56648 5.58789 5.70015 5.76462 5.88633 5.94993 6.04039 6.10265 6.26091 6.47388 6.75239 6.91312 7.10616 7.32143 7.51604 7.57415 7.82779 8.05178 8.17266 8.97388 9.60159 10.69156 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.002373 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.947703 B =11794.340207 C =13416.021306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.099 4.099 5 C -0.108 4.108 6 S -0.178 6.178 7 C -0.127 4.127 8 C 0.521 3.479 9 O -0.488 6.488 10 N -0.665 5.665 11 C 0.172 3.828 12 C -0.226 4.226 13 C -0.060 4.060 14 C -0.231 4.231 15 C 0.173 3.827 16 O -0.212 6.212 17 C -0.389 4.389 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.879 5.879 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.256 1.256 25 C -0.187 4.187 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.407 0.593 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.279 0.721 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 16.397 -22.986 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.137 4.137 5 C -0.257 4.257 6 S 0.048 5.952 7 C -0.278 4.278 8 C 0.306 3.694 9 O -0.360 6.360 10 N -0.311 5.311 11 C 0.079 3.921 12 C -0.247 4.247 13 C -0.079 4.079 14 C -0.251 4.251 15 C 0.120 3.880 16 O -0.117 6.117 17 C -0.464 4.464 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.517 5.517 21 Si 0.728 3.272 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.180 1.180 25 C -0.208 4.208 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.242 0.758 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.152 0.848 43 H 0.089 0.911 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.074 15.423 -21.311 27.827 hybrid contribution 0.642 0.347 -1.463 1.635 sum -8.432 15.770 -22.774 28.956 Atomic orbital electron populations 1.21839 0.94821 1.01984 1.01912 1.21119 0.95974 0.96316 0.97790 1.21919 1.01059 0.95915 1.01936 1.21367 0.91820 1.01832 0.98728 1.23616 1.00178 1.02865 0.99027 1.87760 1.00934 1.77114 1.29361 1.23462 0.97856 1.05088 1.01421 1.19744 0.82320 0.80050 0.87296 1.90840 1.62464 1.46045 1.36692 1.43226 1.06678 1.62479 1.18744 1.17133 0.92867 0.93571 0.88518 1.20329 0.96992 1.05660 1.01769 1.20561 0.98431 0.95133 0.93742 1.21316 0.97066 1.02320 1.04367 1.18868 0.90776 0.87358 0.91027 1.83587 1.48102 1.44999 1.35014 1.20779 1.04732 1.24407 0.96483 0.87521 1.24459 0.99330 0.95965 0.94152 1.69643 1.39158 1.31008 1.11846 0.86213 0.82810 0.80003 0.78212 1.19871 1.20765 1.18016 1.20170 1.02614 0.99386 0.98624 0.92487 0.92600 0.92501 0.91102 0.92704 0.92434 0.92586 0.90800 0.90776 0.89936 0.90215 0.87164 0.87147 0.75802 0.87159 0.86684 0.84770 0.91055 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.09 -0.52 2.92 -90.61 -0.26 -0.78 16 3 C -0.15 -0.79 8.95 37.16 0.33 -0.46 16 4 C -0.10 -0.70 4.69 -26.73 -0.13 -0.83 16 5 C -0.11 -0.80 5.70 37.16 0.21 -0.59 16 6 S -0.18 -2.09 20.87 -107.50 -2.24 -4.34 16 7 C -0.13 -1.22 6.43 36.01 0.23 -0.98 16 8 C 0.52 7.53 7.69 -10.98 -0.08 7.45 16 9 O -0.49 -9.67 13.31 5.55 0.07 -9.60 16 10 N -0.67 -8.79 5.34 -9.88 -0.05 -8.85 16 11 C 0.17 3.05 6.30 -83.72 -0.53 2.52 16 12 C -0.23 -3.68 9.96 -39.34 -0.39 -4.08 16 13 C -0.06 -1.07 10.03 -39.64 -0.40 -1.46 16 14 C -0.23 -5.06 9.17 -39.36 -0.36 -5.42 16 15 C 0.17 4.20 6.64 -39.13 -0.26 3.94 16 16 O -0.21 -5.90 8.58 0.04 0.00 -5.89 16 17 C -0.39 -11.25 9.95 30.89 0.31 -10.94 16 18 H 0.11 3.11 5.43 -52.49 -0.29 2.83 16 19 C 0.06 1.86 5.49 -17.52 -0.10 1.76 16 20 N -0.88 -25.84 13.96 55.48 0.77 -25.06 16 21 Si 0.90 22.63 28.62 -169.99 -4.86 17.77 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.26 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.19 -4.10 8.64 -39.21 -0.34 -4.44 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.52 6.57 -51.92 -0.34 0.18 16 36 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.41 3.50 8.82 -40.82 -0.36 3.14 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.13 3.05 5.63 -52.49 -0.30 2.76 16 43 H 0.28 7.59 8.31 -40.82 -0.34 7.26 16 44 H 0.13 3.11 6.23 -52.49 -0.33 2.79 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -33.79 376.97 -8.63 -42.43 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.58 Total: 2.63 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.42 Total: -14.76 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.72 Total: -33.91 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.07 Total: -15.49 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.86 Total: 17.77 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -2.24 Total: -4.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.79 -8.63 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048951650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.654 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds