Wall clock time and date at job start Tue Mar 31 2020 14:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47545 * 2 1 4 4 C 1.53006 * 109.46785 * 119.99637 * 2 1 3 5 5 C 1.53000 * 109.46983 * 64.99880 * 4 2 1 6 6 O 1.42897 * 109.47199 * 179.97438 * 5 4 2 7 7 C 1.35903 * 117.00082 * 179.97438 * 6 5 4 8 8 C 1.38807 * 120.02025 * 359.72642 * 7 6 5 9 9 C 1.38167 * 120.08520 * 179.74365 * 8 7 6 10 10 C 1.38166 * 120.12253 * 0.55635 * 9 8 7 11 11 C 1.38888 * 120.04159 * 359.69617 * 10 9 8 12 12 N 1.39922 * 120.04668 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00297 * 213.29724 * 12 11 10 14 14 O 1.21287 * 120.00045 * 5.28009 * 13 12 11 15 15 C 1.50699 * 120.00135 * 185.27257 * 13 12 11 16 16 S 1.80998 * 109.47119 * 180.02562 * 15 13 12 17 17 C 1.76205 * 99.99889 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00197 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00100 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99743 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00130 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47236 * 89.99570 * 21 19 17 23 23 H 1.48503 * 109.47041 * 209.99936 * 21 19 17 24 24 H 1.48505 * 109.46683 * 329.99539 * 21 19 17 25 25 C 1.38590 * 120.01783 * 180.02562 * 7 6 5 26 26 H 1.09004 * 109.46837 * 59.99656 * 1 2 3 27 27 H 1.08994 * 109.47637 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47180 * 300.00525 * 1 2 3 29 29 H 1.08997 * 109.47180 * 239.99475 * 2 1 3 30 30 H 1.08996 * 109.47435 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47333 * 300.00040 * 3 2 1 32 32 H 1.09007 * 109.47203 * 59.99491 * 3 2 1 33 33 H 1.08999 * 109.47465 * 305.00003 * 4 2 1 34 34 H 1.08994 * 109.47381 * 184.99569 * 4 2 1 35 35 H 1.09000 * 109.47362 * 60.00088 * 5 4 2 36 36 H 1.09002 * 109.47411 * 299.99998 * 5 4 2 37 37 H 1.08001 * 119.95481 * 0.02705 * 8 7 6 38 38 H 1.07998 * 119.93853 * 180.25526 * 9 8 7 39 39 H 1.08000 * 119.98192 * 179.72514 * 10 9 8 40 40 H 0.97000 * 119.99258 * 33.29510 * 12 11 10 41 41 H 1.09001 * 109.47092 * 300.00157 * 15 13 12 42 42 H 1.08997 * 109.46956 * 60.00052 * 15 13 12 43 43 H 0.96999 * 120.00185 * 180.02562 * 20 19 17 44 44 H 1.07992 * 120.06534 * 359.95918 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1881 6 8 2.1119 -2.8692 2.3547 7 6 1.8346 -4.1956 2.4577 8 6 1.1130 -4.8339 1.4584 9 6 0.8349 -6.1835 1.5592 10 6 1.2640 -6.8996 2.6602 11 6 1.9818 -6.2650 3.6657 12 7 2.4169 -6.9901 4.7804 13 6 2.4864 -6.3939 5.9871 14 8 2.0820 -5.2590 6.1269 15 6 3.0662 -7.1373 7.1627 16 16 3.0201 -6.0774 8.6291 17 6 3.7368 -7.1652 9.8156 18 1 4.0474 -8.1567 9.5209 19 6 3.9013 -6.7482 11.1293 20 7 3.5223 -5.5400 11.4886 21 14 4.6605 -7.9017 12.3872 22 1 6.1335 -7.7146 12.4048 23 1 4.1071 -7.6009 13.7321 24 1 4.3442 -9.3067 12.0247 25 6 2.2667 -4.9104 3.5636 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2617 2.1371 34 1 3.1262 -0.6444 1.2953 35 1 2.0697 -2.6550 0.3005 36 1 0.5488 -2.2723 1.1422 37 1 0.7725 -4.2758 0.5987 38 1 0.2768 -6.6787 0.7783 39 1 1.0415 -7.9535 2.7388 40 1 2.6686 -7.9220 4.6846 41 1 2.4810 -8.0382 7.3474 42 1 4.0982 -7.4126 6.9453 43 1 3.6376 -5.2484 12.4065 44 1 2.8246 -4.4146 4.3441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049140760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:41 Heat of formation + Delta-G solvation = -67.067132 kcal Electronic energy + Delta-G solvation = -23579.852806 eV Core-core repulsion = 20009.177084 eV Total energy + Delta-G solvation = -3570.675723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56369 -39.45080 -37.64125 -36.53399 -34.32510 -32.45231 -31.10392 -30.41216 -29.15909 -28.25944 -27.55720 -25.51609 -24.20841 -23.00393 -21.84236 -20.44891 -20.19631 -18.58947 -17.82733 -16.63146 -16.40862 -16.19660 -16.09172 -15.71018 -15.13153 -14.91424 -14.82332 -14.31997 -14.10009 -13.96933 -13.59693 -13.39155 -13.20724 -13.00331 -12.65927 -12.59081 -12.36991 -12.12030 -11.95570 -11.83431 -11.49274 -11.26642 -11.13874 -11.07804 -11.04778 -10.91465 -10.79587 -10.76654 -10.16029 -9.85368 -9.49756 -9.08749 -8.36215 -8.28528 -8.04303 -6.53846 -6.23902 -3.95282 1.25860 1.43058 2.81514 2.92075 3.09778 3.21428 3.26991 3.30791 3.62771 3.81195 4.17562 4.44472 4.44798 4.56509 4.74762 4.82162 4.90992 5.02170 5.03624 5.08709 5.11418 5.13644 5.25087 5.26589 5.32247 5.43630 5.50148 5.51364 5.54829 5.62320 5.63926 5.79659 5.80548 5.91316 5.93164 5.99743 6.06157 6.23186 6.24854 6.39023 6.43226 6.90175 7.41503 7.50518 7.57636 8.32841 8.40484 9.21365 10.83504 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.002184 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.608877 B =12818.369426 C =14190.157355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.117 4.117 5 C 0.059 3.941 6 O -0.311 6.311 7 C 0.151 3.849 8 C -0.233 4.233 9 C -0.062 4.062 10 C -0.189 4.189 11 C 0.198 3.802 12 N -0.680 5.680 13 C 0.530 3.470 14 O -0.491 6.491 15 C -0.154 4.154 16 S -0.056 6.056 17 C -0.537 4.537 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.158 4.158 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.411 0.589 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.269 0.731 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 3.732 -26.230 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.154 4.154 5 C -0.016 4.016 6 O -0.225 6.225 7 C 0.105 3.895 8 C -0.252 4.252 9 C -0.081 4.081 10 C -0.210 4.210 11 C 0.103 3.897 12 N -0.327 5.327 13 C 0.317 3.683 14 O -0.362 6.362 15 C -0.304 4.304 16 S 0.170 5.830 17 C -0.685 4.685 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.179 4.179 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.247 0.753 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.064 5.885 -25.620 26.771 hybrid contribution 0.905 -2.621 0.430 2.806 sum -4.159 3.264 -25.190 25.739 Atomic orbital electron populations 1.21952 0.95038 1.01973 1.02130 1.21038 0.96069 0.96501 0.97535 1.21824 1.01170 0.95434 1.02021 1.21630 1.02356 0.92411 0.99034 1.22884 0.99063 0.92896 0.86781 1.86092 1.74213 1.19126 1.43065 1.18710 0.94205 0.82855 0.93759 1.21131 1.06959 0.96350 1.00777 1.20632 0.97461 0.93152 0.96849 1.20780 1.03241 1.00764 0.96200 1.17415 0.94041 0.91081 0.87196 1.43719 1.67113 1.15200 1.06679 1.20571 0.77635 0.87160 0.82909 1.90744 1.44066 1.17963 1.83431 1.23550 1.03475 1.04494 0.98927 1.85449 1.81661 1.19151 0.96734 1.22857 1.47354 1.02239 0.96034 0.90823 1.25002 0.95234 0.95696 0.97666 1.70013 1.44290 1.17147 1.18746 0.86151 0.79203 0.80289 0.79756 1.20242 1.20734 1.19679 1.20385 1.05750 0.93230 0.98510 0.92542 0.92510 0.92282 0.91011 0.92468 0.92507 0.92379 0.90511 0.90670 0.92227 0.91840 0.85776 0.85632 0.85645 0.75262 0.88816 0.88690 0.92124 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.95 37.16 0.33 -0.60 16 2 C -0.09 -0.59 2.92 -90.62 -0.26 -0.85 16 3 C -0.15 -0.87 9.19 37.15 0.34 -0.53 16 4 C -0.12 -0.97 5.05 -26.73 -0.14 -1.10 16 5 C 0.06 0.56 4.50 37.16 0.17 0.73 16 6 O -0.31 -4.30 10.13 -19.44 -0.20 -4.50 16 7 C 0.15 2.14 6.68 -39.24 -0.26 1.88 16 8 C -0.23 -2.65 9.04 -39.40 -0.36 -3.00 16 9 C -0.06 -0.65 10.03 -39.63 -0.40 -1.05 16 10 C -0.19 -2.18 9.96 -39.37 -0.39 -2.57 16 11 C 0.20 2.86 6.28 -83.72 -0.53 2.34 16 12 N -0.68 -9.63 5.34 -9.88 -0.05 -9.68 16 13 C 0.53 9.91 7.59 -10.99 -0.08 9.83 16 14 O -0.49 -11.12 13.55 5.55 0.08 -11.05 16 15 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 16 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 17 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 21 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C -0.16 -2.57 8.59 -39.24 -0.34 -2.90 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 36 H 0.06 0.55 6.07 -51.93 -0.32 0.23 16 37 H 0.12 1.10 6.29 -52.49 -0.33 0.77 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.41 4.23 8.82 -40.82 -0.36 3.87 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.15 2.74 6.41 -52.49 -0.34 2.41 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -34.41 379.09 -9.15 -43.56 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.70 Total: 2.24 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.49 Total: -13.51 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.68 Total: -35.00 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.12 Total: -15.55 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.41 -9.15 -43.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049140760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.506 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds