Wall clock time and date at job start Tue Mar 31 2020 14:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47545 * 2 1 4 4 C 1.53006 * 109.46785 * 119.99637 * 2 1 3 5 5 C 1.53000 * 109.46983 * 64.99880 * 4 2 1 6 6 O 1.42897 * 109.47199 * 179.97438 * 5 4 2 7 7 C 1.35903 * 117.00082 * 179.97438 * 6 5 4 8 8 C 1.38807 * 120.02025 * 359.72642 * 7 6 5 9 9 C 1.38167 * 120.08520 * 179.74365 * 8 7 6 10 10 C 1.38166 * 120.12253 * 0.55635 * 9 8 7 11 11 C 1.38888 * 120.04159 * 359.69617 * 10 9 8 12 12 N 1.39922 * 120.04668 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00297 * 213.29724 * 12 11 10 14 14 O 1.21287 * 120.00045 * 5.28009 * 13 12 11 15 15 C 1.50699 * 120.00135 * 185.27257 * 13 12 11 16 16 S 1.80998 * 109.47119 * 180.02562 * 15 13 12 17 17 C 1.76205 * 99.99889 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00197 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00100 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99743 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00130 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47236 * 89.99570 * 21 19 17 23 23 H 1.48503 * 109.47041 * 209.99936 * 21 19 17 24 24 H 1.48505 * 109.46683 * 329.99539 * 21 19 17 25 25 C 1.38590 * 120.01783 * 180.02562 * 7 6 5 26 26 H 1.09004 * 109.46837 * 59.99656 * 1 2 3 27 27 H 1.08994 * 109.47637 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47180 * 300.00525 * 1 2 3 29 29 H 1.08997 * 109.47180 * 239.99475 * 2 1 3 30 30 H 1.08996 * 109.47435 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47333 * 300.00040 * 3 2 1 32 32 H 1.09007 * 109.47203 * 59.99491 * 3 2 1 33 33 H 1.08999 * 109.47465 * 305.00003 * 4 2 1 34 34 H 1.08994 * 109.47381 * 184.99569 * 4 2 1 35 35 H 1.09000 * 109.47362 * 60.00088 * 5 4 2 36 36 H 1.09002 * 109.47411 * 299.99998 * 5 4 2 37 37 H 1.08001 * 119.95481 * 0.02705 * 8 7 6 38 38 H 1.07998 * 119.93853 * 180.25526 * 9 8 7 39 39 H 1.08000 * 119.98192 * 179.72514 * 10 9 8 40 40 H 0.97000 * 119.99258 * 33.29510 * 12 11 10 41 41 H 1.09001 * 109.47092 * 300.00157 * 15 13 12 42 42 H 1.08997 * 109.46956 * 60.00052 * 15 13 12 43 43 H 0.96999 * 120.00185 * 180.02562 * 20 19 17 44 44 H 1.07992 * 120.06534 * 359.95918 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1881 6 8 2.1119 -2.8692 2.3547 7 6 1.8346 -4.1956 2.4577 8 6 1.1130 -4.8339 1.4584 9 6 0.8349 -6.1835 1.5592 10 6 1.2640 -6.8996 2.6602 11 6 1.9818 -6.2650 3.6657 12 7 2.4169 -6.9901 4.7804 13 6 2.4864 -6.3939 5.9871 14 8 2.0820 -5.2590 6.1269 15 6 3.0662 -7.1373 7.1627 16 16 3.0201 -6.0774 8.6291 17 6 3.7368 -7.1652 9.8156 18 1 4.0474 -8.1567 9.5209 19 6 3.9013 -6.7482 11.1293 20 7 3.5223 -5.5400 11.4886 21 14 4.6605 -7.9017 12.3872 22 1 6.1335 -7.7146 12.4048 23 1 4.1071 -7.6009 13.7321 24 1 4.3442 -9.3067 12.0247 25 6 2.2667 -4.9104 3.5636 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2617 2.1371 34 1 3.1262 -0.6444 1.2953 35 1 2.0697 -2.6550 0.3005 36 1 0.5488 -2.2723 1.1422 37 1 0.7725 -4.2758 0.5987 38 1 0.2768 -6.6787 0.7783 39 1 1.0415 -7.9535 2.7388 40 1 2.6686 -7.9220 4.6846 41 1 2.4810 -8.0382 7.3474 42 1 4.0982 -7.4126 6.9453 43 1 3.6376 -5.2484 12.4065 44 1 2.8246 -4.4146 4.3441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049140760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:40 Heat of formation + Delta-G solvation = -88.563508 kcal Electronic energy + Delta-G solvation = -23580.784959 eV Core-core repulsion = 20009.177084 eV Total energy + Delta-G solvation = -3571.607876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70308 -40.61182 -38.63743 -37.25483 -35.56820 -34.59827 -32.09129 -31.61723 -30.00739 -29.51421 -28.04120 -27.67493 -25.01451 -24.04610 -22.85351 -21.58482 -20.92876 -19.97036 -19.44185 -18.05152 -17.31738 -17.20347 -17.13714 -16.89308 -16.78869 -16.31540 -15.99046 -15.67777 -14.98850 -14.92749 -14.71147 -14.62512 -14.42257 -14.10721 -13.87791 -13.61135 -13.18685 -13.12486 -13.06953 -12.89822 -12.73595 -12.65741 -12.62542 -12.25943 -11.95573 -11.77762 -11.75960 -11.54727 -11.51281 -11.23717 -11.15246 -10.95796 -10.30813 -9.45105 -9.05120 -8.69457 -8.35971 -6.14853 0.21290 0.45907 1.21802 1.42330 1.44090 1.50960 1.55555 2.00630 2.25490 2.30798 2.81184 2.98447 3.27288 3.75556 3.83641 3.85866 3.93388 4.00822 4.10814 4.20474 4.24463 4.26684 4.28760 4.39113 4.45164 4.48086 4.56741 4.71256 4.76438 4.79690 4.87850 4.99594 5.05385 5.07670 5.25734 5.28888 5.30928 5.35229 5.41035 5.41518 5.46889 5.47681 5.86369 6.18720 6.34192 6.48477 7.05132 7.06854 8.73306 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.002184 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.608877 B =12818.369426 C =14190.157355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.116 4.116 5 C 0.054 3.946 6 O -0.341 6.341 7 C 0.134 3.866 8 C -0.224 4.224 9 C -0.052 4.052 10 C -0.179 4.179 11 C 0.176 3.824 12 N -0.657 5.657 13 C 0.532 3.468 14 O -0.540 6.540 15 C -0.128 4.128 16 S -0.151 6.151 17 C -0.545 4.545 18 H 0.086 0.914 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.256 1.256 25 C -0.194 4.194 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.154 0.846 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.432 0.568 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.271 0.729 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 1.023 -28.986 29.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 C -0.205 4.205 4 C -0.153 4.153 5 C -0.020 4.020 6 O -0.256 6.256 7 C 0.088 3.912 8 C -0.243 4.243 9 C -0.071 4.071 10 C -0.199 4.199 11 C 0.081 3.919 12 N -0.305 5.305 13 C 0.320 3.680 14 O -0.416 6.416 15 C -0.279 4.279 16 S 0.076 5.924 17 C -0.693 4.693 18 H 0.104 0.896 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.180 1.180 25 C -0.215 4.215 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.176 0.824 40 H 0.272 0.728 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.644 3.138 -28.433 29.157 hybrid contribution 1.045 -1.741 1.082 2.301 sum -4.599 1.397 -27.351 27.770 Atomic orbital electron populations 1.21961 0.94649 1.02232 1.02286 1.21019 0.96330 0.96489 0.96712 1.21837 1.01166 0.95261 1.02275 1.21652 1.01892 0.92157 0.99617 1.23151 0.99795 0.93010 0.86086 1.86065 1.74860 1.19443 1.45220 1.18877 0.95048 0.83141 0.94138 1.21505 1.05220 0.97148 1.00419 1.21184 0.96181 0.92604 0.97098 1.21157 1.01370 1.02306 0.95063 1.17629 0.95704 0.90621 0.87971 1.43325 1.65973 1.15910 1.05243 1.20369 0.77280 0.86406 0.83981 1.90741 1.46491 1.20016 1.84311 1.23361 1.05431 1.03374 0.95688 1.85671 1.82155 1.23232 1.01378 1.23207 1.47153 1.02515 0.96432 0.89591 1.26165 0.95566 0.97463 1.00119 1.70188 1.45835 1.19475 1.19347 0.84924 0.78247 0.78254 0.76369 1.19350 1.20368 1.18000 1.20297 1.07663 0.94662 0.98893 0.91360 0.92194 0.93177 0.89734 0.92544 0.91311 0.93067 0.92095 0.91379 0.90322 0.90770 0.82837 0.81257 0.82353 0.72836 0.86284 0.86559 0.91992 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.95 71.98 0.64 -1.02 16 2 C -0.09 -1.01 2.92 -10.79 -0.03 -1.04 16 3 C -0.15 -1.65 9.19 71.98 0.66 -0.99 16 4 C -0.12 -1.95 5.05 30.60 0.15 -1.79 16 5 C 0.05 0.99 4.50 71.98 0.32 1.31 16 6 O -0.34 -9.84 10.13 -92.46 -0.94 -10.78 16 7 C 0.13 3.84 6.68 22.49 0.15 3.99 16 8 C -0.22 -4.48 9.04 22.39 0.20 -4.28 16 9 C -0.05 -0.86 10.03 22.24 0.22 -0.64 16 10 C -0.18 -3.50 9.96 22.41 0.22 -3.28 16 11 C 0.18 4.95 6.28 38.14 0.24 5.19 16 12 N -0.66 -18.06 5.34 -303.55 -1.62 -19.68 16 13 C 0.53 20.34 7.59 87.66 0.66 21.00 16 14 O -0.54 -26.09 13.55 -3.05 -0.04 -26.13 16 15 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 16 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 17 C -0.55 -31.09 9.50 67.96 0.65 -30.45 16 18 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 19 C 0.01 0.66 5.49 84.86 0.47 1.13 16 20 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 21 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 25 C -0.19 -6.64 8.59 22.49 0.19 -6.44 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.60 6.56 -2.39 -0.02 0.59 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.12 7.67 -2.39 -0.02 1.10 16 36 H 0.07 1.18 6.07 -2.39 -0.01 1.16 16 37 H 0.15 2.10 6.29 -2.91 -0.02 2.09 16 38 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.43 7.87 8.82 -92.71 -0.82 7.05 16 41 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 42 H 0.12 4.07 8.14 -2.40 -0.02 4.05 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.10 4.32 6.41 -2.91 -0.02 4.30 16 Total: -1.00 -80.74 379.09 3.93 -76.81 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.18 Total: 21.79 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 5.20 Total: -21.89 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.33 Total: -75.86 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.98 Total: -36.91 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -80.74 3.93 -76.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049140760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.753 kcal (2) G-P(sol) polarization free energy of solvation -80.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds