Wall clock time and date at job start Tue Mar 31 2020 14:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00038 * 2 1 4 4 C 1.38737 * 120.05327 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94098 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05670 * 0.02736 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47103 * 299.99761 * 7 6 5 9 9 C 1.52997 * 109.47238 * 59.99954 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 7 6 5 11 11 N 1.46496 * 109.47421 * 180.02562 * 10 7 6 12 12 C 1.34777 * 120.00258 * 180.02562 * 11 10 7 13 13 O 1.21279 * 120.00166 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99757 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.46848 * 179.97438 * 14 12 11 16 16 C 1.76206 * 99.99904 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99973 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99695 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00104 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99570 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47213 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46603 * 120.00194 * 20 18 16 23 23 H 1.48490 * 109.46946 * 239.99878 * 20 18 16 24 24 C 1.38262 * 120.11316 * 0.24341 * 6 5 4 25 25 C 1.38147 * 120.05382 * 359.45639 * 24 6 5 26 26 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47139 * 300.00432 * 1 2 3 28 28 H 1.09003 * 109.46666 * 60.00318 * 1 2 3 29 29 H 1.07993 * 120.02833 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97194 * 179.97438 * 5 4 3 31 31 H 1.08992 * 109.47280 * 59.99899 * 8 7 6 32 32 H 1.09002 * 109.46777 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47140 * 300.00046 * 8 7 6 34 34 H 1.09004 * 109.47261 * 59.99705 * 9 7 6 35 35 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.46832 * 299.99686 * 9 7 6 37 37 H 1.09004 * 109.46930 * 299.99901 * 10 7 6 38 38 H 1.09004 * 109.47059 * 59.99503 * 10 7 6 39 39 H 0.97008 * 119.99406 * 359.97438 * 11 10 7 40 40 H 1.08996 * 109.47390 * 299.99902 * 14 12 11 41 41 H 1.09004 * 109.47662 * 59.99777 * 14 12 11 42 42 H 0.97002 * 119.99547 * 180.02562 * 19 18 16 43 43 H 1.08003 * 119.97178 * 179.70593 * 24 6 5 44 44 H 1.08001 * 120.02610 * 180.24214 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.8600 5.1445 1.2524 9 6 4.8608 5.1463 -1.2460 10 6 2.9325 6.1278 0.0026 11 7 3.5976 7.4331 0.0031 12 6 2.8635 8.5634 0.0036 13 8 1.6524 8.5000 0.0031 14 6 3.5478 9.9061 0.0047 15 16 2.3012 11.2184 0.0043 16 6 3.3486 12.6354 0.0065 17 1 4.4217 12.5136 0.0072 18 6 2.7945 13.9080 0.0074 19 7 1.4866 14.0563 0.0060 20 14 3.9050 15.4101 0.0104 21 1 5.3251 14.9759 0.0109 22 1 3.6376 16.2257 -1.2014 23 1 3.6349 16.2228 1.2235 24 6 1.9212 3.6047 0.0068 25 6 1.2916 2.3751 0.0000 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 4.0209 0.3798 0.0014 30 1 5.1346 2.5749 0.0019 31 1 5.6106 4.3542 1.2522 32 1 5.3545 6.1159 1.2534 33 1 4.2369 5.0535 2.1421 34 1 4.2384 5.0564 -2.1363 35 1 5.3554 6.1176 -1.2454 36 1 5.6115 4.3559 -1.2463 37 1 2.3104 6.0378 -0.8879 38 1 2.3090 6.0368 0.8921 39 1 4.5663 7.4838 0.0039 40 1 4.1702 9.9960 0.8949 41 1 4.1710 9.9972 -0.8850 42 1 1.0994 14.9457 0.0063 43 1 1.3343 4.5114 0.0120 44 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049480040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:25 Heat of formation + Delta-G solvation = -60.162535 kcal Electronic energy + Delta-G solvation = -24056.912927 eV Core-core repulsion = 20486.536610 eV Total energy + Delta-G solvation = -3570.376317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71937 -39.51957 -38.39454 -36.16168 -33.17878 -32.42389 -31.52315 -29.76555 -29.18534 -27.70527 -27.50565 -26.08880 -25.39879 -22.96222 -22.40678 -20.40574 -19.51756 -18.49903 -17.86908 -16.62139 -16.52949 -16.05961 -15.60337 -15.39053 -15.37550 -14.91365 -14.80163 -14.27842 -14.17545 -13.95567 -13.54023 -13.43731 -13.29210 -13.15869 -12.78220 -12.57192 -12.54517 -12.32469 -12.23475 -11.72967 -11.47587 -11.43638 -11.07484 -11.07289 -11.04799 -11.01028 -10.76350 -10.66702 -9.80015 -9.39356 -9.26816 -9.07460 -8.84346 -8.35908 -8.22362 -6.49284 -6.21541 -3.91768 1.07580 1.14495 2.95122 3.05298 3.12594 3.21681 3.28622 3.33539 3.47012 3.73676 4.20646 4.32524 4.42289 4.56125 4.64681 4.73732 4.79618 4.81171 4.92523 5.06454 5.10196 5.13708 5.15394 5.22946 5.36609 5.37567 5.51003 5.53477 5.59198 5.68681 5.71050 5.77432 5.83383 5.89095 5.90584 6.04985 6.06293 6.14126 6.15204 6.37404 6.46860 6.64949 7.07865 7.60223 7.72859 8.35775 8.63793 9.23963 10.85924 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030745 B = 0.002076 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.495901 B =13486.279951 C =14195.109558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.120 3.880 4 C -0.151 4.151 5 C -0.073 4.073 6 C -0.102 4.102 7 C -0.031 4.031 8 C -0.140 4.140 9 C -0.140 4.140 10 C 0.130 3.870 11 N -0.736 5.736 12 C 0.531 3.469 13 O -0.519 6.519 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.079 4.079 25 C -0.203 4.203 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.133 0.867 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.569 -27.609 -0.001 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.103 4.103 7 C -0.032 4.032 8 C -0.197 4.197 9 C -0.197 4.197 10 C 0.006 3.994 11 N -0.392 5.392 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.097 4.097 25 C -0.222 4.222 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.151 0.849 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.460 -27.785 -0.003 27.999 hybrid contribution 2.212 1.166 0.004 2.500 sum 5.672 -26.619 0.001 27.217 Atomic orbital electron populations 1.23063 0.78311 1.03902 1.01547 1.86051 1.21461 1.27079 1.88821 1.19061 0.92410 0.84125 0.96876 1.20377 0.91332 0.98535 1.06701 1.20741 0.99766 0.90780 0.97824 1.19551 0.93308 0.94093 1.03341 1.19645 0.95323 0.91313 0.96896 1.21916 0.99269 1.02031 0.96534 1.21917 0.99261 1.02026 0.96543 1.21414 0.94315 0.81385 1.02313 1.46052 1.10044 1.05254 1.77832 1.20290 0.87640 0.85150 0.75177 1.90696 1.13888 1.87139 1.47573 1.23528 1.05284 0.96709 1.04882 1.85400 1.07130 0.94193 1.96704 1.22913 0.94569 0.92028 1.58764 0.90877 1.25002 0.95456 0.98628 0.94577 1.70031 1.09806 1.23460 1.46988 0.86112 0.80098 0.81371 0.77889 1.19620 1.20581 1.20576 1.21079 0.94177 0.97564 0.96880 1.21257 1.00143 0.92248 1.08510 0.88282 0.92555 0.92548 0.85325 0.85357 0.92134 0.91993 0.92078 0.92074 0.91992 0.92137 0.91342 0.91341 0.76798 0.89262 0.89263 0.92252 0.84931 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -2.98 10.50 -19.41 -0.20 -3.18 16 3 C 0.12 1.17 6.69 -39.21 -0.26 0.91 16 4 C -0.15 -1.35 9.99 -39.43 -0.39 -1.74 16 5 C -0.07 -0.61 8.70 -39.61 -0.34 -0.95 16 6 C -0.10 -0.94 4.76 -104.60 -0.50 -1.44 16 7 C -0.03 -0.28 0.61 -155.66 -0.09 -0.37 16 8 C -0.14 -1.12 8.11 37.16 0.30 -0.81 16 9 C -0.14 -1.12 8.11 37.16 0.30 -0.82 16 10 C 0.13 1.52 3.22 -4.04 -0.01 1.51 16 11 N -0.74 -9.70 4.96 -60.29 -0.30 -10.00 16 12 C 0.53 9.86 7.85 -10.99 -0.09 9.77 16 13 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 14 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 20 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.08 -0.78 8.97 -39.61 -0.36 -1.14 16 25 C -0.20 -1.91 9.04 -39.43 -0.36 -2.27 16 26 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.13 0.82 7.09 -52.49 -0.37 0.45 16 31 H 0.06 0.40 7.38 -51.93 -0.38 0.02 16 32 H 0.06 0.47 6.86 -51.93 -0.36 0.12 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.47 6.86 -51.93 -0.36 0.12 16 36 H 0.06 0.40 7.38 -51.93 -0.38 0.02 16 37 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 38 H 0.07 0.87 7.50 -51.93 -0.39 0.48 16 39 H 0.40 4.13 6.16 -40.82 -0.25 3.88 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.13 1.32 5.89 -52.48 -0.31 1.01 16 44 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -34.97 372.16 -8.10 -43.06 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.40 Total: 1.14 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.39 Total: -12.03 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.43 Total: -35.46 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.12 Total: -14.85 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.97 -8.10 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049480040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.100 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds