Wall clock time and date at job start Tue Mar 31 2020 14:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00038 * 2 1 4 4 C 1.38737 * 120.05327 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94098 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05670 * 0.02736 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47103 * 299.99761 * 7 6 5 9 9 C 1.52997 * 109.47238 * 59.99954 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 7 6 5 11 11 N 1.46496 * 109.47421 * 180.02562 * 10 7 6 12 12 C 1.34777 * 120.00258 * 180.02562 * 11 10 7 13 13 O 1.21279 * 120.00166 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99757 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.46848 * 179.97438 * 14 12 11 16 16 C 1.76206 * 99.99904 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99973 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99695 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00104 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99570 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47213 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46603 * 120.00194 * 20 18 16 23 23 H 1.48490 * 109.46946 * 239.99878 * 20 18 16 24 24 C 1.38262 * 120.11316 * 0.24341 * 6 5 4 25 25 C 1.38147 * 120.05382 * 359.45639 * 24 6 5 26 26 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47139 * 300.00432 * 1 2 3 28 28 H 1.09003 * 109.46666 * 60.00318 * 1 2 3 29 29 H 1.07993 * 120.02833 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97194 * 179.97438 * 5 4 3 31 31 H 1.08992 * 109.47280 * 59.99899 * 8 7 6 32 32 H 1.09002 * 109.46777 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47140 * 300.00046 * 8 7 6 34 34 H 1.09004 * 109.47261 * 59.99705 * 9 7 6 35 35 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.46832 * 299.99686 * 9 7 6 37 37 H 1.09004 * 109.46930 * 299.99901 * 10 7 6 38 38 H 1.09004 * 109.47059 * 59.99503 * 10 7 6 39 39 H 0.97008 * 119.99406 * 359.97438 * 11 10 7 40 40 H 1.08996 * 109.47390 * 299.99902 * 14 12 11 41 41 H 1.09004 * 109.47662 * 59.99777 * 14 12 11 42 42 H 0.97002 * 119.99547 * 180.02562 * 19 18 16 43 43 H 1.08003 * 119.97178 * 179.70593 * 24 6 5 44 44 H 1.08001 * 120.02610 * 180.24214 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.8600 5.1445 1.2524 9 6 4.8608 5.1463 -1.2460 10 6 2.9325 6.1278 0.0026 11 7 3.5976 7.4331 0.0031 12 6 2.8635 8.5634 0.0036 13 8 1.6524 8.5000 0.0031 14 6 3.5478 9.9061 0.0047 15 16 2.3012 11.2184 0.0043 16 6 3.3486 12.6354 0.0065 17 1 4.4217 12.5136 0.0072 18 6 2.7945 13.9080 0.0074 19 7 1.4866 14.0563 0.0060 20 14 3.9050 15.4101 0.0104 21 1 5.3251 14.9759 0.0109 22 1 3.6376 16.2257 -1.2014 23 1 3.6349 16.2228 1.2235 24 6 1.9212 3.6047 0.0068 25 6 1.2916 2.3751 0.0000 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 4.0209 0.3798 0.0014 30 1 5.1346 2.5749 0.0019 31 1 5.6106 4.3542 1.2522 32 1 5.3545 6.1159 1.2534 33 1 4.2369 5.0535 2.1421 34 1 4.2384 5.0564 -2.1363 35 1 5.3554 6.1176 -1.2454 36 1 5.6115 4.3559 -1.2463 37 1 2.3104 6.0378 -0.8879 38 1 2.3090 6.0368 0.8921 39 1 4.5663 7.4838 0.0039 40 1 4.1702 9.9960 0.8949 41 1 4.1710 9.9972 -0.8850 42 1 1.0994 14.9457 0.0063 43 1 1.3343 4.5114 0.0120 44 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049480040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:25 Heat of formation + Delta-G solvation = -82.581862 kcal Electronic energy + Delta-G solvation = -24057.885102 eV Core-core repulsion = 20486.536610 eV Total energy + Delta-G solvation = -3571.348492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47469 -40.64760 -39.35239 -37.04939 -34.58578 -34.35039 -32.21878 -31.07654 -30.03819 -28.30289 -28.12880 -27.72986 -26.91675 -23.66615 -23.16313 -21.77070 -20.35899 -19.78303 -19.15414 -17.95384 -17.48471 -16.87898 -16.69610 -16.69498 -16.63062 -16.26679 -15.79398 -15.54062 -15.33722 -14.86853 -14.68557 -14.49471 -14.18121 -14.06734 -14.01692 -13.59533 -13.49154 -13.15103 -13.11295 -12.91253 -12.86289 -12.72417 -12.59893 -12.16980 -12.10476 -11.77877 -11.71849 -11.68485 -11.40390 -11.15476 -10.96793 -10.26278 -10.13324 -9.93218 -9.04678 -8.66047 -8.34370 -6.12203 0.39073 0.43683 1.27767 1.41921 1.47907 1.58978 1.62680 2.26193 2.30723 2.38819 2.77560 2.99874 3.32801 3.55740 3.70334 3.89867 3.96605 3.98758 4.02097 4.21378 4.30354 4.31490 4.36234 4.42848 4.52025 4.56382 4.66912 4.68713 4.71532 4.73260 4.84838 4.95446 4.99187 5.03597 5.10277 5.23588 5.35551 5.40622 5.42050 5.42911 5.51128 5.66840 5.81615 6.20690 6.43610 6.50784 7.07116 7.25116 8.75069 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.030745 B = 0.002076 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.495901 B =13486.279951 C =14195.109558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.108 3.892 4 C -0.158 4.158 5 C -0.068 4.068 6 C -0.108 4.108 7 C -0.019 4.019 8 C -0.141 4.141 9 C -0.141 4.141 10 C 0.130 3.870 11 N -0.708 5.708 12 C 0.533 3.467 13 O -0.567 6.567 14 C -0.129 4.129 15 S -0.153 6.153 16 C -0.544 4.544 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.097 4.097 25 C -0.211 4.211 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.123 0.877 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.637 -28.547 0.002 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.063 3.937 4 C -0.176 4.176 5 C -0.086 4.086 6 C -0.109 4.109 7 C -0.020 4.020 8 C -0.198 4.198 9 C -0.198 4.198 10 C 0.007 3.993 11 N -0.363 5.363 12 C 0.319 3.681 13 O -0.446 6.446 14 C -0.280 4.280 15 S 0.074 5.926 16 C -0.692 4.692 17 H 0.102 0.898 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.115 4.115 25 C -0.230 4.230 26 H 0.138 0.862 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.172 0.828 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.253 0.747 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.141 0.859 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.575 -28.768 0.000 29.509 hybrid contribution 1.236 1.283 0.003 1.782 sum 7.811 -27.485 0.003 28.573 Atomic orbital electron populations 1.23295 0.76808 1.05464 1.01943 1.86029 1.23125 1.26965 1.88812 1.19282 0.93034 0.84305 0.97121 1.20674 0.91271 0.99446 1.06246 1.20973 1.00930 0.89964 0.96732 1.19634 0.93058 0.94660 1.03549 1.19553 0.94514 0.89721 0.98172 1.21943 0.99329 1.03220 0.95282 1.21945 0.99321 1.03216 0.95291 1.21502 0.95225 0.81352 1.01250 1.45768 1.10747 1.04392 1.75385 1.20071 0.87038 0.85875 0.75130 1.90688 1.15922 1.87707 1.50238 1.23370 1.03118 0.94682 1.06875 1.85599 1.12099 0.97865 1.97044 1.23243 0.94922 0.92397 1.58652 0.89813 1.26150 0.97064 1.02305 0.93804 1.70196 1.12089 1.24412 1.48133 0.84890 0.78359 0.76573 0.78028 1.17929 1.19992 1.19983 1.21130 0.94857 0.97464 0.98022 1.21384 1.00807 0.92179 1.08634 0.86203 0.92161 0.92155 0.83915 0.82801 0.90023 0.91384 0.93145 0.93147 0.91383 0.90026 0.92521 0.92508 0.74673 0.87119 0.87124 0.92030 0.85938 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -5.99 10.50 -92.37 -0.97 -6.96 16 3 C 0.11 2.03 6.69 22.51 0.15 2.18 16 4 C -0.16 -2.57 9.99 22.37 0.22 -2.34 16 5 C -0.07 -0.98 8.70 22.25 0.19 -0.79 16 6 C -0.11 -1.86 4.76 -19.85 -0.09 -1.96 16 7 C -0.02 -0.30 0.61 -52.93 -0.03 -0.33 16 8 C -0.14 -1.85 8.11 71.98 0.58 -1.26 16 9 C -0.14 -1.85 8.11 71.98 0.58 -1.27 16 10 C 0.13 3.00 3.22 86.38 0.28 3.28 16 11 N -0.71 -17.66 4.96 -463.06 -2.30 -19.95 16 12 C 0.53 19.61 7.85 87.66 0.69 20.29 16 13 O -0.57 -26.45 15.86 -3.03 -0.05 -26.50 16 14 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 15 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 16 C -0.54 -31.02 9.50 67.96 0.65 -30.37 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 18 C 0.01 0.65 5.49 84.86 0.47 1.11 16 19 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 20 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C -0.10 -1.93 8.97 22.25 0.20 -1.73 16 25 C -0.21 -4.00 9.04 22.37 0.20 -3.79 16 26 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 28 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 29 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.15 1.36 7.09 -2.91 -0.02 1.34 16 31 H 0.08 0.76 7.38 -2.39 -0.02 0.74 16 32 H 0.07 0.81 6.86 -2.39 -0.02 0.79 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.07 0.81 6.86 -2.39 -0.02 0.80 16 36 H 0.08 0.76 7.38 -2.39 -0.02 0.74 16 37 H 0.06 1.47 7.52 -2.38 -0.02 1.45 16 38 H 0.06 1.47 7.50 -2.39 -0.02 1.46 16 39 H 0.41 7.45 6.16 -92.70 -0.57 6.88 16 40 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 41 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.12 2.61 5.89 -2.91 -0.02 2.59 16 44 H 0.14 2.17 6.30 -2.91 -0.02 2.15 16 Total: -1.00 -78.09 372.16 3.92 -74.17 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.44 Total: 19.51 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 5.64 Total: -20.30 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -2.01 Total: -75.81 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.02 Total: -33.46 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -78.09 3.92 -74.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049480040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.410 kcal (2) G-P(sol) polarization free energy of solvation -78.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds