Wall clock time and date at job start Tue Mar 31 2020 13:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47175 * 2 1 4 4 C 1.52997 * 109.47297 * 120.00106 * 2 1 3 5 5 C 1.50709 * 109.46866 * 65.00056 * 4 2 1 6 6 C 1.38231 * 119.99867 * 90.00228 * 5 4 2 7 7 C 1.38238 * 119.99707 * 180.02562 * 6 5 4 8 8 C 1.38236 * 119.99915 * 359.97438 * 7 6 5 9 9 S 1.76202 * 119.99641 * 179.97438 * 8 7 6 10 10 O 1.42102 * 106.40039 * 203.54051 * 9 8 7 11 11 O 1.42099 * 106.40195 * 336.46020 * 9 8 7 12 12 N 1.65600 * 107.21644 * 90.00403 * 9 8 7 13 13 C 1.36933 * 119.99817 * 269.99362 * 12 9 8 14 14 H 1.08002 * 119.99759 * 129.74783 * 13 12 9 15 15 C 1.38808 * 120.00568 * 309.75364 * 13 12 9 16 16 N 1.31618 * 119.99694 * 334.65277 * 15 13 12 17 17 Si 1.86802 * 120.00467 * 154.65353 * 15 13 12 18 18 H 1.48501 * 109.46888 * 89.99759 * 17 15 13 19 19 H 1.48501 * 109.46952 * 209.99686 * 17 15 13 20 20 H 1.48497 * 109.46981 * 329.99734 * 17 15 13 21 21 C 1.46497 * 120.00174 * 90.00084 * 12 9 8 22 22 C 1.52997 * 117.50249 * 183.82140 * 21 12 9 23 23 C 1.52991 * 59.99939 * 252.50833 * 22 21 12 24 24 C 1.38235 * 120.00186 * 0.26081 * 8 7 6 25 25 C 1.38234 * 119.99706 * 359.48174 * 24 8 7 26 26 H 1.09002 * 109.47455 * 59.99562 * 1 2 3 27 27 H 1.09007 * 109.47638 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47130 * 299.99973 * 1 2 3 29 29 H 1.09005 * 109.46679 * 240.00184 * 2 1 3 30 30 H 1.08998 * 109.46873 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46889 * 300.00324 * 3 2 1 32 32 H 1.09000 * 109.47070 * 59.99990 * 3 2 1 33 33 H 1.08995 * 109.47308 * 305.00027 * 4 2 1 34 34 H 1.08998 * 109.46942 * 184.99835 * 4 2 1 35 35 H 1.08000 * 120.00448 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.99717 * 179.97438 * 7 6 5 37 37 H 0.97000 * 120.00330 * 175.09469 * 16 15 13 38 38 H 1.09005 * 115.55160 * 329.52611 * 21 12 9 39 39 H 1.09009 * 117.49314 * 359.97438 * 22 21 12 40 40 H 1.08994 * 117.50312 * 145.01519 * 22 21 12 41 41 H 1.09004 * 117.49612 * 252.50680 * 23 22 21 42 42 H 1.09000 * 117.52204 * 107.48079 * 23 22 21 43 43 H 1.07995 * 120.00125 * 179.72517 * 24 8 7 44 44 H 1.08000 * 120.00082 * 180.23239 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 -2.1734 1.1887 6 6 2.4814 -3.0966 0.5949 7 6 2.1154 -4.4285 0.5390 8 6 0.9096 -4.8371 1.0774 9 16 0.4429 -6.5347 1.0056 10 8 -0.9746 -6.5655 1.1016 11 8 1.1607 -7.1025 -0.0814 12 7 1.0204 -7.2603 2.3775 13 6 2.2722 -7.8152 2.3834 14 1 2.9683 -7.5690 3.1717 15 6 2.6468 -8.6940 1.3764 16 7 1.7301 -9.3796 0.7267 17 14 4.4517 -8.9036 0.9430 18 1 5.0357 -9.9914 1.7683 19 1 4.5783 -9.2510 -0.4952 20 1 5.1758 -7.6353 1.2116 21 6 0.1920 -7.3087 3.5848 22 6 0.8147 -7.9124 4.8452 23 6 -0.2594 -8.6851 4.0772 24 6 0.0673 -3.9131 1.6670 25 6 0.4357 -2.5821 1.7276 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8901 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6443 1.2950 35 1 3.4233 -2.7773 0.1738 36 1 2.7716 -5.1498 0.0746 37 1 1.9841 -9.9394 -0.0236 38 1 -0.4998 -6.4763 3.7141 39 1 1.8407 -8.2740 4.7760 40 1 0.5329 -7.4771 5.8039 41 1 -1.2479 -8.7582 4.5306 42 1 0.0596 -9.5547 3.5026 43 1 -0.8767 -4.2316 2.0837 44 1 -0.2207 -1.8607 2.1916 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051155898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:18 Heat of formation + Delta-G solvation = -47.422428 kcal Electronic energy + Delta-G solvation = -26003.289719 eV Core-core repulsion = 22433.465855 eV Total energy + Delta-G solvation = -3569.823864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.44647 -38.73612 -37.70278 -37.11359 -36.19127 -35.03977 -32.58573 -32.39704 -31.94807 -28.03261 -27.52565 -26.79337 -23.72617 -23.05264 -22.95033 -22.22038 -20.87023 -20.65601 -19.24728 -18.08425 -17.71957 -17.08360 -16.65916 -16.50807 -15.95820 -15.60103 -15.50942 -15.26893 -15.09541 -15.01418 -14.41068 -14.11933 -14.02604 -13.75774 -13.50121 -13.17521 -13.03396 -12.97634 -12.76308 -12.64652 -12.55074 -12.49626 -12.29863 -12.16111 -12.07305 -12.01179 -11.89941 -11.74674 -11.60257 -11.52292 -11.23890 -10.96580 -10.56519 -9.93608 -9.89375 -9.29825 -8.39803 -6.11908 -0.11377 0.15675 0.39902 1.46381 1.51777 1.60461 2.34088 2.51285 2.88074 3.01674 3.22765 3.50219 3.72258 3.75672 3.95468 4.02329 4.07350 4.12278 4.21823 4.32221 4.35664 4.43904 4.44967 4.55446 4.71568 4.75289 4.78535 4.82161 4.83988 4.98024 4.99584 5.05174 5.05494 5.11645 5.25138 5.28465 5.33228 5.36162 5.40222 5.48159 5.49205 5.59553 5.60134 5.86772 6.01105 6.31406 7.04826 7.46524 8.64740 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.004318 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.864698 B = 6482.280796 C = 7220.818784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.075 4.075 5 C -0.037 4.037 6 C -0.144 4.144 7 C -0.039 4.039 8 C -0.686 4.686 9 S 2.590 3.410 10 O -1.036 7.036 11 O -0.986 6.986 12 N -0.805 5.805 13 C -0.297 4.297 14 H 0.093 0.907 15 C 0.023 3.977 16 N -0.830 5.830 17 Si 0.964 3.036 18 H -0.260 1.260 19 H -0.290 1.290 20 H -0.252 1.252 21 C 0.065 3.935 22 C -0.150 4.150 23 C -0.195 4.195 24 C -0.049 4.049 25 C -0.136 4.136 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.118 0.882 37 H 0.274 0.726 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 17.344 4.547 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.112 4.112 5 C -0.037 4.037 6 C -0.163 4.163 7 C -0.059 4.059 8 C -0.769 4.769 9 S 2.693 3.307 10 O -1.026 7.026 11 O -0.975 6.975 12 N -0.629 5.629 13 C -0.441 4.441 14 H 0.111 0.889 15 C -0.191 4.191 16 N -0.466 5.466 17 Si 0.786 3.214 18 H -0.184 1.184 19 H -0.216 1.216 20 H -0.175 1.175 21 C -0.043 4.043 22 C -0.189 4.189 23 C -0.235 4.235 24 C -0.068 4.068 25 C -0.154 4.154 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.167 0.833 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.146 0.854 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.555 16.967 3.678 17.430 hybrid contribution 0.648 -0.339 -0.672 0.994 sum 2.203 16.627 3.006 17.040 Atomic orbital electron populations 1.21966 0.95373 1.01398 1.02465 1.21072 0.96020 0.96852 0.97011 1.21803 1.01315 0.94346 1.02433 1.20842 1.02371 0.88428 0.99601 1.20426 0.93124 0.96883 0.93273 1.21422 1.01271 0.92115 1.01490 1.20940 0.93583 0.97364 0.93990 1.31776 1.05174 1.27898 1.12053 1.08068 0.72839 0.73792 0.76002 1.93276 1.33376 1.88142 1.87787 1.93373 1.73325 1.76098 1.54673 1.52211 1.24207 1.60550 1.25909 1.19179 0.89937 1.20911 1.14054 0.88941 1.26512 1.03123 0.92079 0.97358 1.70010 1.37661 1.21044 1.17870 0.85403 0.78713 0.79838 0.77405 1.18438 1.21598 1.17502 1.21586 0.97840 0.97010 0.87886 1.23172 0.98661 1.02598 0.94452 1.23189 0.99571 0.96223 1.04554 1.21020 0.97506 0.93856 0.94399 1.21410 0.97454 0.95082 1.01456 0.92389 0.94001 0.91321 0.92206 0.92038 0.92308 0.91711 0.89044 0.89377 0.83341 0.86377 0.91672 0.86310 0.88773 0.86084 0.87316 0.91347 0.85355 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.76 71.98 0.63 -2.07 16 2 C -0.09 -1.51 2.91 -10.80 -0.03 -1.54 16 3 C -0.14 -1.74 9.19 71.98 0.66 -1.08 16 4 C -0.08 -1.33 4.84 29.85 0.14 -1.18 16 5 C -0.04 -0.97 4.71 -19.86 -0.09 -1.06 16 6 C -0.14 -4.43 9.70 22.27 0.22 -4.21 16 7 C -0.04 -1.57 9.52 22.27 0.21 -1.36 16 8 C -0.69 -29.63 5.97 22.27 0.13 -29.49 16 9 S 2.59 135.01 5.46 -56.49 -0.31 134.70 16 10 O -1.04 -57.38 16.50 -128.00 -2.11 -59.49 16 11 O -0.99 -57.75 13.50 -128.00 -1.73 -59.48 16 12 N -0.81 -39.94 3.03 -322.96 -0.98 -40.92 16 13 C -0.30 -15.03 7.91 84.03 0.67 -14.37 16 14 H 0.09 4.35 7.31 -2.91 -0.02 4.33 16 15 C 0.02 1.20 3.98 84.86 0.34 1.53 16 16 N -0.83 -47.92 11.76 21.65 0.25 -47.67 16 17 Si 0.96 41.53 29.63 68.60 2.03 43.56 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 21 C 0.06 2.74 6.02 44.99 0.27 3.01 16 22 C -0.15 -5.24 9.82 30.59 0.30 -4.94 16 23 C -0.20 -7.76 10.35 30.59 0.32 -7.44 16 24 C -0.05 -1.79 9.52 22.27 0.21 -1.57 16 25 C -0.14 -3.85 7.97 22.27 0.18 -3.67 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 0.91 6.27 -2.38 -0.01 0.89 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 35 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 36 H 0.12 4.96 7.62 -2.91 -0.02 4.93 16 37 H 0.27 15.23 8.32 -92.71 -0.77 14.46 16 38 H 0.12 4.56 8.09 -2.38 -0.02 4.54 16 39 H 0.09 3.51 6.70 -2.38 -0.02 3.50 16 40 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 42 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.13 4.58 7.61 -2.91 -0.02 4.56 16 44 H 0.15 3.26 8.04 -2.91 -0.02 3.24 16 Total: -1.00 -70.70 369.86 2.29 -68.41 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.97 Total: 30.35 kcal Atomic # 6 Polarization: -73.61 SS G_CDS: 4.15 Total: -69.45 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -0.72 Total: -88.59 kcal Atomic # 8 Polarization: -115.13 SS G_CDS: -3.84 Total: -118.97 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 135.01 SS G_CDS: -0.31 Total: 134.70 kcal Total: -70.70 2.29 -68.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051155898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.985 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds