Wall clock time and date at job start Tue Mar 31 2020 14:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.35904 * 116.99628 * 180.02562 * 5 4 2 7 7 C 1.38758 * 120.05922 * 359.72826 * 6 5 4 8 8 C 1.38121 * 119.94303 * 179.69478 * 7 6 5 9 9 C 1.38284 * 120.05670 * 0.60266 * 8 7 6 10 10 C 1.38245 * 120.11162 * 359.67148 * 9 8 7 11 11 C 1.50705 * 119.97268 * 180.02562 * 10 9 8 12 12 N 1.46498 * 109.46925 * 269.97938 * 11 10 9 13 13 C 1.34773 * 119.99946 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00511 * 180.02562 * 13 12 11 16 16 S 1.80990 * 109.47491 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00145 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00309 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00189 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99857 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00069 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46988 * 89.99763 * 21 19 17 23 23 H 1.48497 * 109.47123 * 210.00339 * 21 19 17 24 24 H 1.48501 * 109.46681 * 330.00117 * 21 19 17 25 25 C 1.38173 * 120.05607 * 0.02881 * 10 9 8 26 26 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 27 27 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 28 28 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 30 30 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 31 31 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 32 32 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 34 34 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 35 35 H 1.08003 * 120.02200 * 359.97438 * 7 6 5 36 36 H 1.07998 * 119.96674 * 180.29445 * 8 7 6 37 37 H 1.08003 * 119.94493 * 179.69558 * 9 8 7 38 38 H 1.08999 * 109.46727 * 29.97964 * 11 10 9 39 39 H 1.08992 * 109.46868 * 149.98166 * 11 10 9 40 40 H 0.96999 * 120.00316 * 0.02562 * 12 11 10 41 41 H 1.09000 * 109.46970 * 300.00846 * 15 13 12 42 42 H 1.09000 * 109.46970 * 59.99706 * 15 13 12 43 43 H 0.97005 * 119.99804 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.02728 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0804 -1.4431 2.2330 7 6 3.3302 -1.9370 3.2907 8 6 3.9584 -2.5717 4.3444 9 6 5.3348 -2.7041 4.3519 10 6 6.0850 -2.2079 3.3020 11 6 7.5849 -2.3545 3.3131 12 7 8.1844 -1.1903 3.9700 13 6 9.5233 -1.1033 4.0967 14 8 10.2320 -1.9886 3.6665 15 6 10.1401 0.0939 4.7730 16 16 11.9414 -0.0827 4.7875 17 6 12.3885 1.4091 5.6116 18 1 11.6222 2.0989 5.9333 19 6 13.7256 1.6984 5.8464 20 7 14.0595 2.8126 6.4625 21 14 15.0510 0.5057 5.2893 22 1 15.4763 0.8481 3.9084 23 1 16.2171 0.5992 6.2040 24 1 14.5131 -0.8782 5.3128 25 6 5.4609 -1.5776 2.2426 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.7515 -0.1582 2.1370 34 1 1.6053 -1.7197 1.2953 35 1 2.2555 -1.8292 3.2877 36 1 3.3744 -2.9605 5.1655 37 1 5.8246 -3.1964 5.1791 38 1 7.8575 -3.2589 3.8569 39 1 7.9509 -2.4221 2.2887 40 1 7.6177 -0.4824 4.3144 41 1 9.8677 0.9986 4.2294 42 1 9.7738 0.1614 5.7973 43 1 14.9940 3.0150 6.6262 44 1 6.0474 -1.1905 1.4225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056435141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:37 Heat of formation + Delta-G solvation = -69.633927 kcal Electronic energy + Delta-G solvation = -23341.120363 eV Core-core repulsion = 19770.333335 eV Total energy + Delta-G solvation = -3570.787027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61608 -39.31927 -38.18596 -35.78123 -34.62146 -32.42126 -31.73783 -30.50685 -29.29099 -27.65905 -27.12836 -25.83328 -25.46365 -22.87509 -21.73531 -20.55361 -20.47577 -18.41713 -17.69254 -16.79709 -16.40113 -16.34104 -16.28559 -15.90019 -15.26814 -14.94408 -14.82547 -14.48531 -14.37521 -13.85059 -13.62000 -13.45221 -13.27328 -13.06630 -12.85068 -12.78116 -12.69398 -12.59553 -11.93500 -11.79647 -11.76111 -11.56893 -11.39911 -11.24901 -11.09709 -10.99778 -10.98810 -10.59175 -9.85890 -9.66385 -9.15573 -9.01047 -8.95428 -8.51769 -8.47966 -6.89820 -6.27202 -3.98770 0.88227 1.12987 2.74627 2.81086 2.99331 3.25482 3.34848 3.51085 3.52749 3.81731 4.20493 4.28473 4.34930 4.38811 4.50070 4.53949 4.69758 4.76895 4.83423 4.88840 4.98815 5.02110 5.08121 5.11873 5.15679 5.19216 5.30057 5.34883 5.41580 5.46439 5.56189 5.65411 5.73619 5.76100 5.79672 5.85145 5.96134 6.04308 6.09359 6.28883 6.40838 6.50978 7.07654 7.62837 7.95866 8.43540 8.50008 9.18995 10.81987 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.001987 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.828913 B =14090.001719 C =14837.352798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.063 3.937 5 O -0.312 6.312 6 C 0.128 3.872 7 C -0.205 4.205 8 C -0.082 4.082 9 C -0.138 4.138 10 C -0.064 4.064 11 C 0.162 3.838 12 N -0.732 5.732 13 C 0.531 3.469 14 O -0.520 6.520 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.133 4.133 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.401 0.599 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.270 0.730 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.270 -8.398 -9.603 32.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.012 4.012 5 O -0.226 6.226 6 C 0.083 3.917 7 C -0.224 4.224 8 C -0.100 4.100 9 C -0.157 4.157 10 C -0.065 4.065 11 C 0.039 3.961 12 N -0.387 5.387 13 C 0.317 3.683 14 O -0.394 6.394 15 C -0.274 4.274 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.152 4.152 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.235 0.765 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.852 -9.676 -10.430 32.169 hybrid contribution -0.699 1.068 0.731 1.471 sum -29.550 -8.608 -9.699 32.270 Atomic orbital electron populations 1.21788 0.93766 1.02190 1.02626 1.21135 0.95806 0.97125 0.97330 1.21833 1.02124 0.94783 1.01828 1.22926 0.78640 1.00302 0.99321 1.86069 1.21643 1.73453 1.41426 1.18944 0.92164 0.93340 0.87249 1.21278 1.00092 1.05009 0.95973 1.20941 0.94536 0.97058 0.97432 1.21053 0.93783 1.02106 0.98757 1.19707 0.95145 0.97582 0.94017 1.20145 0.87112 0.89737 0.99137 1.46005 1.06923 1.23759 1.61998 1.20299 0.81416 0.87773 0.78797 1.90704 1.60786 1.40269 1.47674 1.23277 1.02162 0.98506 1.03479 1.84777 0.96956 1.31603 1.78196 1.22325 0.96562 1.04827 1.43170 0.89380 1.24719 0.97961 0.95057 0.93605 1.69943 1.18461 1.23375 1.39933 0.86729 0.81945 0.83697 0.79447 1.19210 1.19960 1.15912 1.20375 0.91433 1.03044 1.00374 0.92300 0.91606 0.92364 0.90011 0.92395 0.92672 0.91692 0.91952 0.92071 0.85594 0.85587 0.85465 0.90376 0.90493 0.76488 0.88453 0.88418 0.91964 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.19 37.16 0.34 -0.23 16 2 C -0.10 -0.53 3.16 -90.62 -0.29 -0.82 16 3 C -0.15 -0.91 9.09 37.16 0.34 -0.57 16 4 C 0.06 0.41 4.12 37.16 0.15 0.56 16 5 O -0.31 -2.93 9.67 -19.44 -0.19 -3.12 16 6 C 0.13 1.24 6.69 -39.22 -0.26 0.98 16 7 C -0.20 -1.68 9.04 -39.43 -0.36 -2.04 16 8 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 9 C -0.14 -1.23 9.70 -39.56 -0.38 -1.62 16 10 C -0.06 -0.64 5.25 -104.64 -0.55 -1.18 16 11 C 0.16 1.88 5.80 -5.19 -0.03 1.85 16 12 N -0.73 -9.61 5.55 -61.47 -0.34 -9.95 16 13 C 0.53 9.51 7.85 -10.99 -0.09 9.43 16 14 O -0.52 -11.27 15.86 5.55 0.09 -11.18 16 15 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 18 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 21 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 C -0.13 -1.35 9.64 -39.43 -0.38 -1.73 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 33 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 34 H 0.06 0.33 7.67 -51.93 -0.40 -0.06 16 35 H 0.13 0.78 6.30 -52.48 -0.33 0.45 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.40 4.36 8.46 -40.82 -0.35 4.02 16 41 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 42 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -34.13 383.27 -9.01 -43.14 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.95 Total: 0.39 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.46 Total: -10.72 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.43 Total: -35.87 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.10 Total: -14.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.13 -9.01 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056435141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.495 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds