Wall clock time and date at job start Tue Mar 31 2020 14:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.35904 * 116.99628 * 180.02562 * 5 4 2 7 7 C 1.38758 * 120.05922 * 359.72826 * 6 5 4 8 8 C 1.38121 * 119.94303 * 179.69478 * 7 6 5 9 9 C 1.38284 * 120.05670 * 0.60266 * 8 7 6 10 10 C 1.38245 * 120.11162 * 359.67148 * 9 8 7 11 11 C 1.50705 * 119.97268 * 180.02562 * 10 9 8 12 12 N 1.46498 * 109.46925 * 269.97938 * 11 10 9 13 13 C 1.34773 * 119.99946 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00511 * 180.02562 * 13 12 11 16 16 S 1.80990 * 109.47491 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00145 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00309 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00189 * 180.02562 * 17 16 15 20 20 N 1.31633 * 119.99857 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00069 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46988 * 89.99763 * 21 19 17 23 23 H 1.48497 * 109.47123 * 210.00339 * 21 19 17 24 24 H 1.48501 * 109.46681 * 330.00117 * 21 19 17 25 25 C 1.38173 * 120.05607 * 0.02881 * 10 9 8 26 26 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 27 27 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 28 28 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 30 30 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 31 31 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 32 32 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 34 34 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 35 35 H 1.08003 * 120.02200 * 359.97438 * 7 6 5 36 36 H 1.07998 * 119.96674 * 180.29445 * 8 7 6 37 37 H 1.08003 * 119.94493 * 179.69558 * 9 8 7 38 38 H 1.08999 * 109.46727 * 29.97964 * 11 10 9 39 39 H 1.08992 * 109.46868 * 149.98166 * 11 10 9 40 40 H 0.96999 * 120.00316 * 0.02562 * 12 11 10 41 41 H 1.09000 * 109.46970 * 300.00846 * 15 13 12 42 42 H 1.09000 * 109.46970 * 59.99706 * 15 13 12 43 43 H 0.97005 * 119.99804 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.02728 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0804 -1.4431 2.2330 7 6 3.3302 -1.9370 3.2907 8 6 3.9584 -2.5717 4.3444 9 6 5.3348 -2.7041 4.3519 10 6 6.0850 -2.2079 3.3020 11 6 7.5849 -2.3545 3.3131 12 7 8.1844 -1.1903 3.9700 13 6 9.5233 -1.1033 4.0967 14 8 10.2320 -1.9886 3.6665 15 6 10.1401 0.0939 4.7730 16 16 11.9414 -0.0827 4.7875 17 6 12.3885 1.4091 5.6116 18 1 11.6222 2.0989 5.9333 19 6 13.7256 1.6984 5.8464 20 7 14.0595 2.8126 6.4625 21 14 15.0510 0.5057 5.2893 22 1 15.4763 0.8481 3.9084 23 1 16.2171 0.5992 6.2040 24 1 14.5131 -0.8782 5.3128 25 6 5.4609 -1.5776 2.2426 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.7515 -0.1582 2.1370 34 1 1.6053 -1.7197 1.2953 35 1 2.2555 -1.8292 3.2877 36 1 3.3744 -2.9605 5.1655 37 1 5.8246 -3.1964 5.1791 38 1 7.8575 -3.2589 3.8569 39 1 7.9509 -2.4221 2.2887 40 1 7.6177 -0.4824 4.3144 41 1 9.8677 0.9986 4.2294 42 1 9.7738 0.1614 5.7973 43 1 14.9940 3.0150 6.6262 44 1 6.0474 -1.1905 1.4225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056435141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:36 Heat of formation + Delta-G solvation = -90.748488 kcal Electronic energy + Delta-G solvation = -23342.035959 eV Core-core repulsion = 19770.333335 eV Total energy + Delta-G solvation = -3571.702623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32229 -40.59518 -38.94126 -36.35803 -35.68008 -34.66707 -32.72156 -31.29682 -30.55119 -28.09185 -27.89494 -27.64460 -26.59497 -23.54914 -22.42639 -21.85610 -21.04858 -19.96531 -18.93144 -17.84077 -17.40737 -17.23122 -17.05752 -16.97450 -16.92886 -16.47999 -15.71438 -15.47123 -15.13601 -15.03849 -14.91149 -14.63948 -14.27319 -14.10041 -14.03995 -13.50355 -13.35074 -13.32125 -13.23256 -13.01754 -12.98985 -12.67989 -12.52393 -12.24986 -12.03672 -11.99018 -11.85963 -11.59698 -11.50726 -11.16699 -11.10837 -10.53788 -10.19555 -9.93889 -9.19556 -8.99312 -8.51097 -6.21999 0.15988 0.44762 1.00234 1.32167 1.47691 1.54711 1.57171 2.16319 2.24350 2.28044 2.69392 2.86429 2.87043 3.57180 3.76354 3.84187 3.87514 3.92986 4.05229 4.10570 4.20833 4.25151 4.33236 4.37223 4.47087 4.48193 4.53577 4.65845 4.68574 4.74322 4.79641 4.96664 4.99471 5.01688 5.18939 5.27568 5.32562 5.36594 5.38042 5.43982 5.57204 5.71121 5.76222 6.11838 6.42544 6.45252 6.93937 7.15097 8.61235 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.001987 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.828913 B =14090.001719 C =14837.352798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.058 3.942 5 O -0.330 6.330 6 C 0.116 3.884 7 C -0.201 4.201 8 C -0.079 4.079 9 C -0.142 4.142 10 C -0.068 4.068 11 C 0.165 3.835 12 N -0.708 5.708 13 C 0.537 3.463 14 O -0.561 6.561 15 C -0.112 4.112 16 S -0.174 6.174 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.045 3.955 20 N -0.917 5.917 21 Si 0.915 3.085 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.236 1.236 25 C -0.148 4.148 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.415 0.585 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.277 0.723 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.503 -9.498 -9.518 35.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.017 4.017 5 O -0.244 6.244 6 C 0.071 3.929 7 C -0.220 4.220 8 C -0.097 4.097 9 C -0.161 4.161 10 C -0.069 4.069 11 C 0.042 3.958 12 N -0.362 5.362 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.262 4.262 16 S 0.053 5.947 17 C -0.677 4.677 18 H 0.080 0.920 19 C -0.160 4.160 20 N -0.555 5.555 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.160 1.160 25 C -0.167 4.167 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.251 0.749 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -31.141 -10.757 -10.339 34.531 hybrid contribution -0.240 1.445 0.680 1.615 sum -31.381 -9.312 -9.658 34.129 Atomic orbital electron populations 1.21765 0.92197 1.02871 1.03132 1.21154 0.97009 0.96410 0.96759 1.21826 1.00834 0.95515 1.02366 1.23139 0.77267 1.01252 1.00009 1.86057 1.23259 1.73491 1.41619 1.19083 0.92157 0.93743 0.87910 1.21566 1.01209 1.03964 0.95256 1.21265 0.94277 0.96215 0.97935 1.21239 0.94428 1.01834 0.98570 1.19484 0.93875 0.98762 0.94739 1.20187 0.88316 0.88825 0.98488 1.45797 1.05346 1.24502 1.60525 1.19947 0.82664 0.86629 0.78493 1.90694 1.62053 1.41472 1.49739 1.23269 0.97573 1.00186 1.05216 1.84688 1.02643 1.29683 1.77690 1.22470 0.96312 1.05774 1.43183 0.91971 1.25576 1.00127 0.96630 0.93703 1.70021 1.19404 1.24965 1.41068 0.85858 0.79632 0.81414 0.79409 1.18726 1.18284 1.16024 1.20401 0.92073 1.03781 1.00477 0.91739 0.91182 0.91602 0.90752 0.91697 0.92320 0.93654 0.91115 0.90840 0.83424 0.82915 0.84436 0.90241 0.91161 0.74872 0.86957 0.86700 0.91370 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.19 71.98 0.66 -0.18 16 2 C -0.09 -0.95 3.16 -10.79 -0.03 -0.98 16 3 C -0.15 -1.72 9.09 71.98 0.65 -1.06 16 4 C 0.06 0.65 4.12 71.98 0.30 0.95 16 5 O -0.33 -5.95 9.67 -92.47 -0.89 -6.84 16 6 C 0.12 2.11 6.69 22.51 0.15 2.26 16 7 C -0.20 -2.79 9.04 22.37 0.20 -2.58 16 8 C -0.08 -1.02 10.04 22.25 0.22 -0.79 16 9 C -0.14 -2.20 9.70 22.28 0.22 -1.99 16 10 C -0.07 -1.26 5.25 -19.88 -0.10 -1.37 16 11 C 0.16 3.66 5.80 85.64 0.50 4.16 16 12 N -0.71 -17.57 5.55 -466.80 -2.59 -20.16 16 13 C 0.54 18.69 7.85 87.66 0.69 19.38 16 14 O -0.56 -24.13 15.86 -3.04 -0.05 -24.18 16 15 C -0.11 -4.25 6.16 71.24 0.44 -3.81 16 16 S -0.17 -8.85 18.55 -56.49 -1.05 -9.89 16 17 C -0.53 -31.09 10.04 67.96 0.68 -30.40 16 18 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 19 C 0.05 2.66 5.50 84.86 0.47 3.13 16 20 N -0.92 -56.11 13.97 21.65 0.30 -55.81 16 21 Si 0.92 45.29 27.74 68.60 1.90 47.20 16 22 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 25 C -0.15 -2.92 9.64 22.37 0.22 -2.70 16 26 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.04 0.69 7.82 -2.39 -0.02 0.68 16 33 H 0.07 0.67 7.65 -2.39 -0.02 0.65 16 34 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 35 H 0.15 1.34 6.30 -2.91 -0.02 1.32 16 36 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 39 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 40 H 0.41 8.20 8.46 -92.71 -0.78 7.42 16 41 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 43 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 44 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -73.83 383.27 3.05 -70.78 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.17 Total: 14.91 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 5.25 Total: -15.99 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.29 Total: -75.97 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.94 Total: -31.02 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.89 kcal Total: -73.83 3.05 -70.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056435141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.970 kcal (2) G-P(sol) polarization free energy of solvation -73.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds