Wall clock time and date at job start Tue Mar 31 2020 13:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47234 * 2 1 4 4 C 1.38233 * 120.00199 * 269.72534 * 3 2 1 5 5 C 1.38239 * 119.99872 * 179.76394 * 4 3 2 6 6 C 1.38230 * 119.99980 * 0.51585 * 5 4 3 7 7 S 1.76202 * 119.99843 * 179.72260 * 6 5 4 8 8 O 1.42102 * 106.40180 * 23.56152 * 7 6 5 9 9 O 1.42106 * 106.39951 * 156.47748 * 7 6 5 10 10 N 1.65595 * 107.21638 * 270.01819 * 7 6 5 11 11 C 1.36940 * 120.00103 * 269.99998 * 10 7 6 12 12 H 1.07998 * 120.00177 * 129.88862 * 11 10 7 13 13 C 1.38817 * 119.99878 * 309.88833 * 11 10 7 14 14 N 1.31615 * 120.00016 * 334.62985 * 13 11 10 15 15 Si 1.86803 * 119.99815 * 154.62842 * 13 11 10 16 16 H 1.48496 * 109.47196 * 60.00103 * 15 13 11 17 17 H 1.48500 * 109.46759 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47177 * 299.99959 * 15 13 11 19 19 C 1.46495 * 120.00252 * 90.00189 * 10 7 6 20 20 C 1.54259 * 110.03388 * 242.29246 * 19 10 7 21 21 C 1.54976 * 104.15735 * 217.13430 * 20 19 10 22 22 C 1.54886 * 102.77842 * 37.88899 * 21 20 19 23 23 C 1.53875 * 110.03647 * 125.06678 * 19 10 7 24 24 C 1.38235 * 119.99961 * 359.73920 * 6 5 4 25 25 C 1.38230 * 119.99794 * 90.00512 * 3 2 1 26 26 H 1.08994 * 109.46961 * 299.99917 * 1 2 3 27 27 H 1.08996 * 109.47043 * 60.00035 * 1 2 3 28 28 H 1.09007 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46893 * 239.99757 * 2 1 3 30 30 H 1.08994 * 109.47300 * 120.00888 * 2 1 3 31 31 H 1.08003 * 120.00082 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.99511 * 180.23349 * 5 4 3 33 33 H 0.97000 * 119.99921 * 175.23929 * 14 13 11 34 34 H 1.09006 * 110.01483 * 3.68015 * 19 10 7 35 35 H 1.08998 * 110.48601 * 335.77885 * 20 19 10 36 36 H 1.08998 * 110.49370 * 98.42897 * 20 19 10 37 37 H 1.08998 * 110.71734 * 279.56726 * 21 20 19 38 38 H 1.09000 * 110.91990 * 156.29567 * 21 20 19 39 39 H 1.08997 * 110.48505 * 203.40541 * 22 21 20 40 40 H 1.08991 * 110.60226 * 80.81539 * 22 21 20 41 41 H 1.08994 * 110.03811 * 238.57459 * 23 19 10 42 42 H 1.09003 * 110.02955 * 359.96236 * 23 19 10 43 43 H 1.08005 * 119.99762 * 179.97438 * 24 6 5 44 44 H 1.08002 * 120.00065 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7243 3.3755 -1.1970 6 6 2.9548 4.0270 0.0001 7 16 3.5432 5.6879 0.0001 8 8 3.1639 6.2480 -1.2496 9 8 3.1640 6.2478 1.2499 10 7 5.1978 5.6217 0.0000 11 6 5.8821 5.5942 1.1859 12 1 6.6422 4.8456 1.3536 13 6 5.5986 6.5288 2.1725 14 7 5.0854 7.6958 1.8456 15 14 5.9456 6.1298 3.9642 16 1 7.3940 5.8527 4.1381 17 1 5.5578 7.2853 4.8126 18 1 5.1611 4.9347 4.3661 19 6 5.9297 5.5924 -1.2686 20 6 6.7255 4.2765 -1.3894 21 6 8.0446 4.6940 -2.0876 22 6 8.3458 6.0746 -1.4535 23 6 6.9592 6.7354 -1.3099 24 6 2.7240 3.3755 1.1972 25 6 2.2628 2.0723 1.1971 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 2.0928 1.5598 -2.1324 32 1 2.9050 3.8844 -2.1324 33 1 4.8232 8.3216 2.5388 34 1 5.2343 5.6861 -2.1028 35 1 6.9310 3.8630 -0.4021 36 1 6.1813 3.5561 -2.0001 37 1 7.8987 4.7866 -3.1638 38 1 8.8429 3.9853 -1.8671 39 1 8.9836 6.6654 -2.1110 40 1 8.8140 5.9541 -0.4767 41 1 6.7639 7.3832 -2.1644 42 1 6.9137 7.3123 -0.3861 43 1 2.9045 3.8844 2.1326 44 1 2.0825 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057606359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:05 Heat of formation + Delta-G solvation = -60.059844 kcal Electronic energy + Delta-G solvation = -26651.693553 eV Core-core repulsion = 23081.321689 eV Total energy + Delta-G solvation = -3570.371864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -38.90288 -37.83433 -35.63887 -34.20561 -34.00433 -33.83496 -31.34829 -30.52440 -29.18623 -27.91848 -26.85288 -24.17671 -23.92985 -22.32021 -20.81096 -20.09270 -19.33287 -18.77255 -17.51346 -16.21750 -15.86971 -15.34726 -15.18450 -15.00694 -14.59472 -14.32523 -13.95497 -13.78398 -13.39478 -13.32855 -13.02848 -12.83163 -12.62693 -12.45274 -12.03375 -11.74579 -11.70070 -11.34051 -11.22417 -11.08747 -11.04357 -10.72704 -10.66081 -10.49149 -10.41208 -10.37714 -10.33504 -10.29618 -10.10317 -9.73714 -9.65247 -9.49711 -8.67121 -8.54835 -8.52935 -7.62017 -6.48980 -4.13523 1.40075 1.80185 2.04107 3.24155 3.30486 3.31066 3.94993 4.18939 4.70864 4.83028 4.92319 4.94470 5.25712 5.28399 5.31277 5.32953 5.35863 5.45710 5.54464 5.56939 5.67488 5.77604 5.84444 5.97643 6.10215 6.10442 6.17318 6.18752 6.23082 6.26633 6.31078 6.39147 6.48206 6.51705 6.54486 6.65955 6.69328 6.83977 6.87404 6.95890 6.99353 7.24856 7.38706 7.45041 7.69600 8.27284 8.94508 9.38233 10.55883 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.005712 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.711499 B = 4900.946949 C = 5879.439666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.058 4.058 4 C -0.148 4.148 5 C -0.033 4.033 6 C -0.661 4.661 7 S 2.562 3.438 8 O -1.014 7.014 9 O -0.949 6.949 10 N -0.809 5.809 11 C -0.276 4.276 12 H 0.081 0.919 13 C 0.065 3.935 14 N -0.778 5.778 15 Si 0.913 3.087 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.155 3.845 20 C -0.137 4.137 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.018 4.018 25 C -0.146 4.146 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.279 0.721 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 -10.476 -3.563 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.058 4.058 4 C -0.166 4.166 5 C -0.052 4.052 6 C -0.738 4.738 7 S 2.661 3.339 8 O -1.004 7.004 9 O -0.938 6.938 10 N -0.633 5.633 11 C -0.422 4.422 12 H 0.099 0.901 13 C -0.153 4.153 14 N -0.414 5.414 15 Si 0.739 3.261 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.194 1.194 19 C 0.047 3.953 20 C -0.176 4.176 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.037 4.037 25 C -0.165 4.165 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.152 0.848 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.694 -9.623 -3.667 10.321 hybrid contribution -0.132 -0.976 0.855 1.304 sum -0.827 -10.599 -2.812 10.997 Atomic orbital electron populations 1.21741 0.94803 1.01421 1.02387 1.20575 0.96138 0.92960 1.02673 1.19963 0.96747 0.95548 0.93532 1.21033 1.02936 0.95502 0.97152 1.20854 0.93566 0.93750 0.97076 1.32591 1.12305 1.31262 0.97602 1.10219 0.75326 0.75310 0.73021 1.93305 1.83848 1.77585 1.45669 1.93411 1.82615 1.74741 1.43008 1.52865 1.19602 1.82490 1.08367 1.18840 1.19716 1.11536 0.92121 0.90130 1.25623 0.95797 0.92821 1.01044 1.69890 1.31225 1.04208 1.36041 0.86229 0.78487 0.78755 0.82650 1.19864 1.20753 1.19424 1.21343 0.93770 0.93842 0.86351 1.22823 0.95759 0.98022 1.01045 1.22435 0.97313 0.97184 0.99022 1.22270 0.97516 0.95546 1.00123 1.22362 0.92980 0.97693 1.02990 1.20921 0.91858 0.93486 0.97480 1.21100 1.02592 0.95632 0.97188 0.92489 0.92538 0.92540 0.91127 0.91072 0.86422 0.85498 0.91004 0.90582 0.90215 0.92946 0.92364 0.92539 0.93025 0.91587 0.93151 0.88479 0.84805 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 37.16 0.37 -1.13 16 2 C -0.09 -0.98 6.06 -27.89 -0.17 -1.15 16 3 C -0.06 -0.88 5.13 -104.63 -0.54 -1.42 16 4 C -0.15 -2.38 9.70 -39.58 -0.38 -2.76 16 5 C -0.03 -0.64 9.52 -39.58 -0.38 -1.02 16 6 C -0.66 -14.17 5.97 -39.59 -0.24 -14.41 16 7 S 2.56 63.65 5.45 -107.50 -0.59 63.07 16 8 O -1.01 -26.92 15.84 -57.17 -0.91 -27.82 16 9 O -0.95 -26.19 13.49 -57.17 -0.77 -26.96 16 10 N -0.81 -18.88 2.65 -52.34 -0.14 -19.02 16 11 C -0.28 -6.57 7.51 -15.06 -0.11 -6.68 16 12 H 0.08 1.82 6.97 -52.49 -0.37 1.46 16 13 C 0.07 1.63 3.98 -17.43 -0.07 1.56 16 14 N -0.78 -20.81 11.75 55.49 0.65 -20.16 16 15 Si 0.91 19.66 29.63 -169.99 -5.04 14.62 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C 0.15 3.17 3.30 -66.82 -0.22 2.95 16 20 C -0.14 -2.37 6.43 -25.03 -0.16 -2.53 16 21 C -0.12 -1.79 6.91 -24.69 -0.17 -1.96 16 22 C -0.12 -1.86 6.83 -25.07 -0.17 -2.03 16 23 C -0.12 -2.34 6.25 -25.61 -0.16 -2.50 16 24 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 25 C -0.15 -2.45 9.70 -39.58 -0.38 -2.83 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.72 8.08 -51.92 -0.42 0.30 16 30 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.13 2.33 7.62 -52.48 -0.40 1.93 16 33 H 0.28 7.19 8.32 -40.82 -0.34 6.85 16 34 H 0.08 1.58 6.90 -51.93 -0.36 1.22 16 35 H 0.08 1.45 6.63 -51.93 -0.34 1.11 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.10 2.17 7.18 -51.93 -0.37 1.80 16 43 H 0.13 2.73 7.62 -52.48 -0.40 2.33 16 44 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -29.78 363.63 -11.33 -41.11 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.87 Total: 6.33 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: -3.16 Total: -36.66 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.51 Total: -39.17 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -1.68 Total: -54.78 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.04 Total: 14.62 kcal Atomic # 16 Polarization: 63.65 SS G_CDS: -0.59 Total: 63.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.78 -11.33 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057606359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.947 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds