Wall clock time and date at job start Tue Mar 31 2020 13:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47234 * 2 1 4 4 C 1.38233 * 120.00199 * 269.72534 * 3 2 1 5 5 C 1.38239 * 119.99872 * 179.76394 * 4 3 2 6 6 C 1.38230 * 119.99980 * 0.51585 * 5 4 3 7 7 S 1.76202 * 119.99843 * 179.72260 * 6 5 4 8 8 O 1.42102 * 106.40180 * 23.56152 * 7 6 5 9 9 O 1.42106 * 106.39951 * 156.47748 * 7 6 5 10 10 N 1.65595 * 107.21638 * 270.01819 * 7 6 5 11 11 C 1.36940 * 120.00103 * 269.99998 * 10 7 6 12 12 H 1.07998 * 120.00177 * 129.88862 * 11 10 7 13 13 C 1.38817 * 119.99878 * 309.88833 * 11 10 7 14 14 N 1.31615 * 120.00016 * 334.62985 * 13 11 10 15 15 Si 1.86803 * 119.99815 * 154.62842 * 13 11 10 16 16 H 1.48496 * 109.47196 * 60.00103 * 15 13 11 17 17 H 1.48500 * 109.46759 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47177 * 299.99959 * 15 13 11 19 19 C 1.46495 * 120.00252 * 90.00189 * 10 7 6 20 20 C 1.54259 * 110.03388 * 242.29246 * 19 10 7 21 21 C 1.54976 * 104.15735 * 217.13430 * 20 19 10 22 22 C 1.54886 * 102.77842 * 37.88899 * 21 20 19 23 23 C 1.53875 * 110.03647 * 125.06678 * 19 10 7 24 24 C 1.38235 * 119.99961 * 359.73920 * 6 5 4 25 25 C 1.38230 * 119.99794 * 90.00512 * 3 2 1 26 26 H 1.08994 * 109.46961 * 299.99917 * 1 2 3 27 27 H 1.08996 * 109.47043 * 60.00035 * 1 2 3 28 28 H 1.09007 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46893 * 239.99757 * 2 1 3 30 30 H 1.08994 * 109.47300 * 120.00888 * 2 1 3 31 31 H 1.08003 * 120.00082 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.99511 * 180.23349 * 5 4 3 33 33 H 0.97000 * 119.99921 * 175.23929 * 14 13 11 34 34 H 1.09006 * 110.01483 * 3.68015 * 19 10 7 35 35 H 1.08998 * 110.48601 * 335.77885 * 20 19 10 36 36 H 1.08998 * 110.49370 * 98.42897 * 20 19 10 37 37 H 1.08998 * 110.71734 * 279.56726 * 21 20 19 38 38 H 1.09000 * 110.91990 * 156.29567 * 21 20 19 39 39 H 1.08997 * 110.48505 * 203.40541 * 22 21 20 40 40 H 1.08991 * 110.60226 * 80.81539 * 22 21 20 41 41 H 1.08994 * 110.03811 * 238.57459 * 23 19 10 42 42 H 1.09003 * 110.02955 * 359.96236 * 23 19 10 43 43 H 1.08005 * 119.99762 * 179.97438 * 24 6 5 44 44 H 1.08002 * 120.00065 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7243 3.3755 -1.1970 6 6 2.9548 4.0270 0.0001 7 16 3.5432 5.6879 0.0001 8 8 3.1639 6.2480 -1.2496 9 8 3.1640 6.2478 1.2499 10 7 5.1978 5.6217 0.0000 11 6 5.8821 5.5942 1.1859 12 1 6.6422 4.8456 1.3536 13 6 5.5986 6.5288 2.1725 14 7 5.0854 7.6958 1.8456 15 14 5.9456 6.1298 3.9642 16 1 7.3940 5.8527 4.1381 17 1 5.5578 7.2853 4.8126 18 1 5.1611 4.9347 4.3661 19 6 5.9297 5.5924 -1.2686 20 6 6.7255 4.2765 -1.3894 21 6 8.0446 4.6940 -2.0876 22 6 8.3458 6.0746 -1.4535 23 6 6.9592 6.7354 -1.3099 24 6 2.7240 3.3755 1.1972 25 6 2.2628 2.0723 1.1971 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 2.0928 1.5598 -2.1324 32 1 2.9050 3.8844 -2.1324 33 1 4.8232 8.3216 2.5388 34 1 5.2343 5.6861 -2.1028 35 1 6.9310 3.8630 -0.4021 36 1 6.1813 3.5561 -2.0001 37 1 7.8987 4.7866 -3.1638 38 1 8.8429 3.9853 -1.8671 39 1 8.9836 6.6654 -2.1110 40 1 8.8140 5.9541 -0.4767 41 1 6.7639 7.3832 -2.1644 42 1 6.9137 7.3123 -0.3861 43 1 2.9045 3.8844 2.1326 44 1 2.0825 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057606359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:04 Heat of formation + Delta-G solvation = -76.478598 kcal Electronic energy + Delta-G solvation = -26652.405524 eV Core-core repulsion = 23081.321689 eV Total energy + Delta-G solvation = -3571.083835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.24938 -39.36924 -37.66318 -36.16832 -35.64472 -35.09278 -33.15281 -31.92855 -30.38313 -29.33411 -28.45367 -25.95042 -25.04625 -23.71902 -22.03145 -21.45826 -20.94646 -20.56913 -19.18726 -18.03848 -17.56331 -17.00842 -16.62186 -16.42040 -16.08374 -15.91284 -15.36431 -15.29054 -14.64240 -14.60238 -14.48876 -14.23650 -14.10167 -13.81705 -13.62248 -13.40410 -13.04024 -12.90085 -12.86662 -12.49485 -12.36809 -12.30796 -12.25411 -12.15483 -12.10926 -11.78108 -11.72944 -11.72734 -11.66875 -11.32350 -11.18224 -11.16389 -10.52827 -9.94946 -9.92875 -9.43791 -8.37576 -6.05323 -0.07761 0.20388 0.39388 1.48710 1.55312 1.59063 2.36805 2.53594 2.95331 3.06525 3.49301 3.74509 3.79231 3.93851 4.00323 4.03226 4.05638 4.21824 4.33612 4.41630 4.47830 4.60430 4.65160 4.67644 4.78273 4.86343 4.90644 4.91145 4.96963 5.01563 5.05690 5.12220 5.19965 5.21012 5.28487 5.29130 5.37061 5.38099 5.44652 5.53075 5.56457 5.62369 5.69940 6.01161 6.03154 6.36772 7.09010 7.52506 8.66941 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.005712 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.711499 B = 4900.946949 C = 5879.439666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.044 4.044 4 C -0.141 4.141 5 C -0.048 4.048 6 C -0.684 4.684 7 S 2.564 3.436 8 O -1.044 7.044 9 O -0.989 6.989 10 N -0.819 5.819 11 C -0.275 4.275 12 H 0.093 0.907 13 C 0.024 3.976 14 N -0.822 5.822 15 Si 0.961 3.039 16 H -0.249 1.249 17 H -0.289 1.289 18 H -0.269 1.269 19 C 0.142 3.858 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.109 4.109 23 C -0.124 4.124 24 C -0.041 4.041 25 C -0.145 4.145 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.125 0.875 33 H 0.273 0.727 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.117 0.883 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 -14.541 -4.329 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.045 4.045 4 C -0.159 4.159 5 C -0.068 4.068 6 C -0.766 4.766 7 S 2.669 3.331 8 O -1.034 7.034 9 O -0.977 6.977 10 N -0.643 5.643 11 C -0.421 4.421 12 H 0.110 0.890 13 C -0.190 4.190 14 N -0.459 5.459 15 Si 0.784 3.216 16 H -0.173 1.173 17 H -0.214 1.214 18 H -0.194 1.194 19 C 0.035 3.965 20 C -0.170 4.170 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.163 4.163 24 C -0.060 4.060 25 C -0.163 4.163 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.135 0.865 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.025 -13.650 -4.440 14.354 hybrid contribution -0.470 0.152 1.000 1.116 sum -0.445 -13.498 -3.439 13.936 Atomic orbital electron populations 1.21750 0.93836 1.02917 1.01831 1.20695 0.96737 0.90022 1.04617 1.20508 0.94118 0.97424 0.92410 1.21438 1.01093 0.94107 0.99298 1.20987 0.94424 0.95341 0.96002 1.31912 1.15673 1.29584 0.99478 1.09453 0.75802 0.76161 0.71727 1.93247 1.84524 1.79103 1.46554 1.93353 1.83433 1.76662 1.44295 1.52762 1.18951 1.83316 1.09290 1.19080 1.19552 1.11121 0.92320 0.88984 1.26453 0.95496 0.92485 1.04559 1.69997 1.33846 1.05432 1.36641 0.85482 0.79592 0.78101 0.78380 1.17319 1.21444 1.19359 1.21632 0.93848 0.96282 0.84714 1.22753 0.96859 0.96265 1.01168 1.22420 0.96277 0.96480 0.99629 1.22224 0.95337 0.96491 1.00664 1.22344 0.95342 0.97427 1.01212 1.20928 0.93584 0.95249 0.96247 1.21426 1.01307 0.94183 0.99409 0.93281 0.92970 0.90079 0.89013 0.89433 0.82703 0.85691 0.91700 0.91768 0.91268 0.91664 0.90536 0.90058 0.90560 0.92198 0.92781 0.92195 0.86544 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.89 71.98 0.71 -1.65 16 2 C -0.08 -1.48 6.06 29.85 0.18 -1.30 16 3 C -0.04 -1.20 5.13 -19.87 -0.10 -1.30 16 4 C -0.14 -4.13 9.70 22.27 0.22 -3.92 16 5 C -0.05 -1.83 9.52 22.27 0.21 -1.61 16 6 C -0.68 -30.07 5.97 22.27 0.13 -29.94 16 7 S 2.56 134.49 5.45 -56.49 -0.31 134.18 16 8 O -1.04 -58.65 15.84 -128.00 -2.03 -60.67 16 9 O -0.99 -58.11 13.49 -128.00 -1.73 -59.84 16 10 N -0.82 -39.84 2.65 -319.52 -0.85 -40.69 16 11 C -0.27 -13.55 7.51 84.03 0.63 -12.91 16 12 H 0.09 4.22 6.97 -2.91 -0.02 4.20 16 13 C 0.02 1.25 3.98 84.86 0.34 1.58 16 14 N -0.82 -46.68 11.75 21.65 0.25 -46.42 16 15 Si 0.96 41.12 29.63 68.60 2.03 43.16 16 16 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 17 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 C 0.14 5.97 3.30 45.71 0.15 6.12 16 20 C -0.13 -4.39 6.43 31.70 0.20 -4.18 16 21 C -0.11 -2.94 6.91 31.91 0.22 -2.72 16 22 C -0.11 -3.33 6.83 31.67 0.22 -3.11 16 23 C -0.12 -4.91 6.25 31.32 0.20 -4.71 16 24 C -0.04 -1.65 9.52 22.27 0.21 -1.44 16 25 C -0.14 -4.54 9.70 22.27 0.22 -4.33 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.32 8.08 -2.38 -0.02 1.30 16 30 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 31 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.13 4.64 7.62 -2.91 -0.02 4.62 16 33 H 0.27 15.04 8.32 -92.71 -0.77 14.27 16 34 H 0.06 2.78 6.90 -2.38 -0.02 2.76 16 35 H 0.07 2.46 6.63 -2.39 -0.02 2.44 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 2.83 7.18 -2.39 -0.02 2.81 16 43 H 0.12 5.00 7.62 -2.91 -0.02 4.98 16 44 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -69.46 363.63 2.09 -67.37 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.98 Total: 28.34 kcal Atomic # 6 Polarization: -69.16 SS G_CDS: 3.74 Total: -65.42 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -0.59 Total: -87.11 kcal Atomic # 8 Polarization: -116.76 SS G_CDS: -3.75 Total: -120.51 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 134.49 SS G_CDS: -0.31 Total: 134.18 kcal Total: -69.46 2.09 -67.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057606359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.108 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds