Wall clock time and date at job start Tue Mar 31 2020 13:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00599 * 2 1 4 4 O 1.20825 * 119.99580 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00460 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47241 * 155.00191 * 5 3 2 7 7 N 1.46903 * 109.47166 * 34.99968 * 5 3 2 8 8 C 1.46901 * 110.99670 * 59.99961 * 7 5 3 9 9 C 1.52992 * 109.47297 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47475 * 180.02562 * 9 8 7 11 11 S 1.80999 * 109.47300 * 180.02562 * 10 9 8 12 12 C 1.76208 * 99.99943 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99815 * 359.97438 * 12 11 10 14 14 C 1.38801 * 119.99626 * 179.97438 * 12 11 10 15 15 N 1.31632 * 120.00202 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99666 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47144 * 59.99945 * 16 14 12 18 18 H 1.48496 * 109.47167 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47109 * 299.99990 * 16 14 12 20 20 C 1.50706 * 109.47526 * 275.00265 * 5 3 2 21 21 C 1.38237 * 119.99744 * 300.00417 * 20 5 3 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 5 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00223 * 120.01627 * 20 5 3 26 26 H 1.09002 * 109.46902 * 299.99780 * 1 2 3 27 27 H 1.08993 * 109.46837 * 59.99471 * 1 2 3 28 28 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47165 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.46868 * 300.00187 * 6 5 3 31 31 H 1.09004 * 109.46872 * 59.99830 * 6 5 3 32 32 H 1.00892 * 111.00442 * 296.04749 * 7 5 3 33 33 H 1.09001 * 109.47093 * 300.00135 * 8 7 5 34 34 H 1.09005 * 109.47248 * 59.99993 * 8 7 5 35 35 H 1.09001 * 109.47266 * 300.00160 * 9 8 7 36 36 H 1.09005 * 109.46870 * 59.99892 * 9 8 7 37 37 H 1.09001 * 109.46899 * 300.00257 * 10 9 8 38 38 H 1.09005 * 109.47264 * 60.00005 * 10 9 8 39 39 H 0.96998 * 119.99456 * 180.02562 * 15 14 12 40 40 H 1.08005 * 120.00088 * 359.97438 * 21 20 5 41 41 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.07998 * 119.99975 * 0.02562 * 25 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0076 2.6069 -0.6091 7 7 4.1151 0.1672 -0.7934 8 6 3.6406 0.2297 -2.1823 9 6 4.2322 -0.9366 -2.9762 10 6 3.7387 -0.8713 -4.4229 11 16 4.4380 -2.2515 -5.3620 12 6 3.7247 -1.9387 -6.9426 13 1 3.0721 -1.0896 -7.0820 14 6 4.0017 -2.7837 -8.0084 15 7 4.7976 -3.8183 -7.8385 16 14 3.2461 -2.4517 -9.6842 17 1 3.6768 -1.1144 -10.1652 18 1 3.6959 -3.4911 -10.6447 19 1 1.7655 -2.4853 -9.5751 20 6 4.0741 1.1776 1.4162 21 6 3.6900 2.1176 2.3542 22 6 4.1561 2.0288 3.6526 23 6 5.0053 0.9994 4.0132 24 6 5.3932 0.0622 3.0741 25 6 4.9239 0.1487 1.7767 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 5.0960 2.6641 -0.6083 30 1 3.6404 2.6772 -1.6330 31 1 3.6004 3.4287 -0.0199 32 1 3.8918 -0.7232 -0.3747 33 1 2.5526 0.1654 -2.1978 34 1 3.9554 1.1715 -2.6318 35 1 5.3202 -0.8719 -2.9607 36 1 3.9178 -1.8786 -2.5268 37 1 2.6507 -0.9357 -4.4388 38 1 4.0534 0.0708 -4.8721 39 1 4.9913 -4.4085 -8.5835 40 1 3.0264 2.9219 2.0725 41 1 3.8564 2.7634 4.3853 42 1 5.3691 0.9299 5.0278 43 1 6.0602 -0.7395 3.3547 44 1 5.2245 -0.5853 1.0437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072517824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:48 Heat of formation + Delta-G solvation = -66.151481 kcal Electronic energy + Delta-G solvation = -24760.338242 eV Core-core repulsion = 21189.702224 eV Total energy + Delta-G solvation = -3570.636017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.31043 -39.41296 -37.25424 -36.68863 -33.89719 -32.42385 -31.35310 -30.72505 -29.14180 -28.21786 -25.96870 -25.37243 -23.93439 -22.70050 -22.40612 -21.11057 -20.00172 -17.93085 -17.66590 -17.35321 -17.16787 -16.51473 -15.76275 -15.42178 -14.93112 -14.80350 -14.69336 -14.22748 -14.18602 -13.91365 -13.67468 -13.40677 -12.99624 -12.90197 -12.67727 -12.47157 -12.39686 -12.26309 -12.05934 -11.74637 -11.41546 -11.27661 -11.16575 -11.05969 -11.01168 -10.87862 -10.80279 -10.63285 -10.37131 -9.55216 -9.17085 -9.07772 -9.04557 -8.75164 -8.30314 -6.51964 -6.22119 -3.92254 0.98765 1.16085 1.93462 2.43046 3.21463 3.23584 3.28072 3.49688 3.51963 3.85710 4.23221 4.27036 4.46261 4.62167 4.75579 4.81396 4.88930 4.90073 4.96862 5.13701 5.19581 5.24033 5.28249 5.33119 5.36378 5.41264 5.46967 5.56228 5.67606 5.70051 5.79705 5.86910 5.88709 6.06413 6.13288 6.17827 6.25009 6.28810 6.32623 6.57227 6.63343 6.72048 6.80979 7.09094 7.46548 7.60928 8.37085 9.24109 10.85992 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020338 B = 0.002497 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.418858 B =11210.160908 C =11859.174480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.440 3.560 4 O -0.504 6.504 5 C 0.175 3.825 6 C -0.130 4.130 7 N -0.662 5.662 8 C 0.054 3.946 9 C -0.092 4.092 10 C -0.113 4.113 11 S -0.130 6.130 12 C -0.517 4.517 13 H 0.071 0.929 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.082 4.082 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.088 4.088 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.354 0.646 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.268 0.732 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 10.146 23.646 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.280 3.720 4 O -0.390 6.390 5 C 0.081 3.919 6 C -0.188 4.188 7 N -0.295 5.295 8 C -0.076 4.076 9 C -0.131 4.131 10 C -0.262 4.262 11 S 0.099 5.901 12 C -0.665 4.665 13 H 0.089 0.911 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.082 4.082 21 C -0.128 4.128 22 C -0.140 4.140 23 C -0.134 4.134 24 C -0.139 4.139 25 C -0.106 4.106 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.175 0.825 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.723 9.755 23.727 25.712 hybrid contribution -2.567 0.949 -1.394 3.071 sum -4.290 10.704 22.333 25.134 Atomic orbital electron populations 1.23289 0.76179 1.03980 1.02423 1.86524 1.23649 1.33362 1.83620 1.25150 0.93223 0.81686 0.71979 1.90635 1.67157 1.36377 1.44848 1.19822 0.83048 0.96150 0.92882 1.21862 1.03071 0.92551 1.01277 1.60716 1.60742 1.05306 1.02716 1.22239 0.97267 1.00931 0.87132 1.21210 1.01640 0.96896 0.93380 1.23215 1.02351 1.03372 0.97253 1.84614 1.64871 1.33183 1.07481 1.22650 1.33914 1.15483 0.94458 0.91059 1.25010 0.95086 0.94560 0.99121 1.70013 1.34118 1.14179 1.32221 0.86233 0.79398 0.78156 0.81791 1.19932 1.20812 1.19978 1.19329 0.99675 0.96935 0.92306 1.21059 0.99879 0.98623 0.93279 1.21078 0.98263 0.98710 0.95944 1.21226 0.97705 0.94900 0.99567 1.21214 1.00167 0.99286 0.93239 1.21139 0.95720 0.97387 0.96370 0.92025 0.91778 0.87831 0.89706 0.91246 0.90850 0.82491 0.94936 0.90275 0.90430 0.91526 0.92389 0.92087 0.92259 0.85868 0.85956 0.86036 0.85625 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.31 9.37 -39.26 -0.37 -4.68 16 3 C 0.44 5.61 5.16 36.00 0.19 5.80 16 4 O -0.50 -7.33 15.84 -18.75 -0.30 -7.62 16 5 C 0.17 1.96 0.76 -133.90 -0.10 1.86 16 6 C -0.13 -1.39 7.58 37.16 0.28 -1.11 16 7 N -0.66 -7.56 4.98 -102.32 -0.51 -8.07 16 8 C 0.05 0.72 4.95 -3.83 -0.02 0.70 16 9 C -0.09 -1.46 5.48 -26.74 -0.15 -1.61 16 10 C -0.11 -2.26 5.67 37.16 0.21 -2.04 16 11 S -0.13 -3.38 21.44 -107.50 -2.30 -5.68 16 12 C -0.52 -14.84 9.50 30.94 0.29 -14.55 16 13 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 16 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.08 -0.85 4.76 -104.62 -0.50 -1.35 16 21 C -0.11 -1.08 8.82 -39.58 -0.35 -1.43 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 25 C -0.09 -0.84 9.14 -39.58 -0.36 -1.21 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 31 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16 32 H 0.35 3.86 7.21 -39.30 -0.28 3.57 16 33 H 0.03 0.46 6.64 -51.93 -0.34 0.11 16 34 H 0.08 1.04 6.30 -51.93 -0.33 0.71 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 38 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.12 1.21 7.58 -52.48 -0.40 0.81 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.14 1.26 6.41 -52.49 -0.34 0.93 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -32.64 376.81 -9.40 -42.05 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.59 Total: 2.77 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.73 Total: -15.75 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.22 Total: -33.33 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.66 Total: -12.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.30 Total: -5.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.64 -9.40 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.104 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds