Wall clock time and date at job start Tue Mar 31 2020 13:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00151 * 2 1 4 4 O 1.20832 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00424 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47295 * 204.99875 * 5 3 2 7 7 N 1.46903 * 109.46810 * 325.00283 * 5 3 2 8 8 C 1.46898 * 110.99673 * 299.99484 * 7 5 3 9 9 C 1.53006 * 109.47006 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47127 * 180.02562 * 9 8 7 11 11 S 1.81000 * 109.47293 * 179.97438 * 10 9 8 12 12 C 1.76202 * 100.00020 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00485 * 359.97438 * 12 11 10 14 14 C 1.38806 * 119.99444 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00213 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99465 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47494 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46982 * 120.00256 * 16 14 12 19 19 H 1.48501 * 109.47125 * 240.00112 * 16 14 12 20 20 C 1.50701 * 109.46959 * 84.99908 * 5 3 2 21 21 C 1.38237 * 119.99985 * 239.72863 * 20 5 3 22 22 C 1.38230 * 120.00335 * 179.80510 * 21 20 5 23 23 C 1.38237 * 119.99673 * 0.40316 * 22 21 20 24 24 C 1.38233 * 120.00278 * 359.85214 * 23 22 21 25 25 C 1.38236 * 120.00204 * 60.00338 * 20 5 3 26 26 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47045 * 300.00110 * 1 2 3 28 28 H 1.08997 * 109.46816 * 60.00475 * 1 2 3 29 29 H 1.09002 * 109.46764 * 179.97438 * 6 5 3 30 30 H 1.08994 * 109.47051 * 300.00031 * 6 5 3 31 31 H 1.09004 * 109.46990 * 60.00059 * 6 5 3 32 32 H 1.00897 * 110.99542 * 176.04626 * 7 5 3 33 33 H 1.09001 * 109.47392 * 60.00807 * 8 7 5 34 34 H 1.09001 * 109.47520 * 300.00529 * 8 7 5 35 35 H 1.09001 * 109.47002 * 299.99782 * 9 8 7 36 36 H 1.08993 * 109.46955 * 60.00219 * 9 8 7 37 37 H 1.09001 * 109.47289 * 299.99953 * 10 9 8 38 38 H 1.09004 * 109.47261 * 59.99697 * 10 9 8 39 39 H 0.97001 * 119.99673 * 179.97438 * 15 14 12 40 40 H 1.08008 * 119.99878 * 0.02562 * 21 20 5 41 41 H 1.07997 * 120.00659 * 180.22792 * 22 21 20 42 42 H 1.08001 * 120.00020 * 179.82688 * 23 22 21 43 43 H 1.08002 * 120.00477 * 179.97438 * 24 23 22 44 44 H 1.07994 * 119.99635 * 359.97438 * 25 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0070 2.6073 0.6101 7 7 4.1144 0.1676 0.7954 8 6 3.6389 0.2306 2.1839 9 6 4.2300 -0.9355 2.9788 10 6 3.7343 -0.8703 4.4247 11 16 4.4329 -2.2501 5.3649 12 6 3.7185 -1.9367 6.9448 13 1 3.0664 -1.0872 7.0837 14 6 3.9938 -2.7820 8.0109 15 7 4.7889 -3.8172 7.8417 16 14 3.2370 -2.4493 9.6859 17 1 2.3878 -1.2332 9.6129 18 1 2.4046 -3.6101 10.0923 19 1 4.3164 -2.2406 10.6842 20 6 4.0750 1.1772 -1.4146 21 6 4.9294 0.1512 -1.7727 22 6 5.3929 0.0592 -3.0718 23 6 5.0085 0.9981 -4.0108 24 6 4.1583 2.0271 -3.6515 25 6 3.6918 2.1169 -2.3533 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 5.0955 2.6641 0.6109 30 1 3.6003 3.4287 0.0203 31 1 3.6391 2.6779 1.6337 32 1 5.1227 0.1606 0.7584 33 1 2.5509 0.1663 2.1987 34 1 3.9533 1.1726 2.6333 35 1 3.9159 -1.8776 2.5295 36 1 5.3179 -0.8707 2.9640 37 1 4.0480 0.0719 4.8743 38 1 2.6463 -0.9351 4.4391 39 1 4.9816 -4.4076 8.5869 40 1 5.2321 -0.5807 -1.0384 41 1 6.0574 -0.7444 -3.3525 42 1 5.3727 0.9279 -5.0251 43 1 3.8583 2.7609 -4.3850 44 1 3.0275 2.9207 -2.0725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072517826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:50 Heat of formation + Delta-G solvation = -63.928897 kcal Electronic energy + Delta-G solvation = -24746.940700 eV Core-core repulsion = 21176.401062 eV Total energy + Delta-G solvation = -3570.539639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21371 -39.40880 -37.33224 -36.55669 -33.89854 -32.42687 -31.33722 -30.73181 -29.02949 -28.12417 -25.90218 -25.33588 -24.20225 -22.67484 -22.43147 -21.11058 -19.99775 -17.80203 -17.70472 -17.38371 -16.69019 -16.38510 -15.53016 -15.46263 -15.09067 -14.82267 -14.78653 -14.23211 -14.07433 -13.84347 -13.73703 -13.41556 -13.21821 -12.95000 -12.84702 -12.47210 -12.37396 -12.14360 -12.01358 -11.76477 -11.40492 -11.35946 -11.19588 -11.08232 -10.86889 -10.79469 -10.62928 -10.58573 -10.42331 -9.54191 -9.16709 -9.07152 -9.06285 -8.68229 -8.29632 -6.52109 -6.22713 -3.92554 0.99012 1.16123 2.01097 2.56668 3.20995 3.21767 3.29918 3.46825 3.53327 3.82480 4.22712 4.23296 4.53987 4.64125 4.74720 4.79053 4.90096 4.99363 5.06913 5.13126 5.15561 5.20946 5.26880 5.31212 5.37560 5.40493 5.42009 5.48356 5.65701 5.67678 5.78199 5.81175 5.89919 6.04608 6.17872 6.21128 6.25765 6.29364 6.32492 6.57834 6.63446 6.72182 6.81633 7.08289 7.61135 7.61313 8.37282 9.23881 10.85514 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.002497 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.403547 B =11208.607770 C =11861.292407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.331 6.331 3 C 0.484 3.516 4 O -0.510 6.510 5 C 0.168 3.832 6 C -0.171 4.171 7 N -0.665 5.665 8 C 0.055 3.945 9 C -0.092 4.092 10 C -0.113 4.113 11 S -0.131 6.131 12 C -0.515 4.515 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.869 5.869 16 Si 0.918 3.082 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.082 4.082 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.110 4.110 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.353 0.647 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.266 0.734 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 11.018 -23.266 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.246 6.246 3 C 0.326 3.674 4 O -0.397 6.397 5 C 0.075 3.925 6 C -0.230 4.230 7 N -0.299 5.299 8 C -0.075 4.075 9 C -0.131 4.131 10 C -0.262 4.262 11 S 0.098 5.902 12 C -0.663 4.663 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.744 3.256 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.083 4.083 21 C -0.106 4.106 22 C -0.139 4.139 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.129 4.129 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.174 0.826 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.583 9.854 -23.684 25.701 hybrid contribution -1.077 1.971 1.835 2.901 sum -2.660 11.825 -21.849 24.986 Atomic orbital electron populations 1.23326 0.76799 1.03968 1.02223 1.86668 1.22673 1.32347 1.82877 1.23293 0.90947 0.81606 0.71595 1.90659 1.66616 1.36603 1.45839 1.19481 0.87471 0.92519 0.93040 1.22459 1.02353 0.95917 1.02283 1.60691 1.14883 1.42168 1.12120 1.22213 1.00598 0.98460 0.86247 1.21205 1.00396 0.98159 0.93318 1.23216 1.02599 1.03163 0.97207 1.84621 1.64733 1.33359 1.07518 1.22732 1.33832 1.15386 0.94399 0.90958 1.25016 0.95106 0.94566 0.99154 1.70033 1.34270 1.14202 1.32009 0.86121 0.78903 0.78371 0.82167 1.19637 1.20561 1.20578 1.19331 0.99446 0.96829 0.92695 1.21146 0.95829 0.96921 0.96682 1.21215 1.00288 0.99161 0.93267 1.21227 0.97720 0.94891 0.99561 1.21079 0.98238 0.98765 0.95925 1.21060 0.99896 0.98592 0.93313 0.87839 0.91901 0.92177 0.90591 0.90474 0.90940 0.82578 0.91040 0.94386 0.90387 0.91572 0.92338 0.92160 0.92372 0.84218 0.85637 0.86043 0.85956 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.33 -4.38 9.63 -39.24 -0.38 -4.75 16 3 C 0.48 6.42 5.16 36.01 0.19 6.60 16 4 O -0.51 -7.49 15.84 -18.75 -0.30 -7.79 16 5 C 0.17 1.88 0.76 -133.90 -0.10 1.78 16 6 C -0.17 -1.74 7.58 37.16 0.28 -1.46 16 7 N -0.66 -7.53 4.88 -102.32 -0.50 -8.03 16 8 C 0.05 0.72 4.95 -3.82 -0.02 0.70 16 9 C -0.09 -1.45 5.48 -26.73 -0.15 -1.60 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 11 S -0.13 -3.40 21.44 -107.50 -2.30 -5.70 16 12 C -0.52 -14.79 9.50 30.94 0.29 -14.50 16 13 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 14 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 15 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 16 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.08 -0.86 4.76 -104.62 -0.50 -1.36 16 21 C -0.09 -0.84 9.14 -39.58 -0.36 -1.20 16 22 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 25 C -0.11 -1.09 8.82 -39.58 -0.35 -1.44 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.78 7.12 -51.93 -0.37 0.41 16 31 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 32 H 0.35 3.42 7.54 -39.29 -0.30 3.13 16 33 H 0.07 1.03 6.64 -51.93 -0.34 0.69 16 34 H 0.04 0.48 6.30 -51.93 -0.33 0.16 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 38 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 1.26 6.40 -52.48 -0.34 0.92 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.12 1.21 7.58 -52.49 -0.40 0.82 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -32.98 377.27 -9.41 -42.39 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.60 Total: 2.22 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.73 Total: -15.36 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.23 Total: -33.27 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.67 Total: -12.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.30 Total: -5.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.98 -9.41 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.538 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds