Wall clock time and date at job start Tue Mar 31 2020 13:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00151 * 2 1 4 4 O 1.20832 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00424 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47295 * 204.99875 * 5 3 2 7 7 N 1.46903 * 109.46810 * 325.00283 * 5 3 2 8 8 C 1.46898 * 110.99673 * 299.99484 * 7 5 3 9 9 C 1.53006 * 109.47006 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47127 * 180.02562 * 9 8 7 11 11 S 1.81000 * 109.47293 * 179.97438 * 10 9 8 12 12 C 1.76202 * 100.00020 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00485 * 359.97438 * 12 11 10 14 14 C 1.38806 * 119.99444 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00213 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99465 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47494 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46982 * 120.00256 * 16 14 12 19 19 H 1.48501 * 109.47125 * 240.00112 * 16 14 12 20 20 C 1.50701 * 109.46959 * 84.99908 * 5 3 2 21 21 C 1.38237 * 119.99985 * 239.72863 * 20 5 3 22 22 C 1.38230 * 120.00335 * 179.80510 * 21 20 5 23 23 C 1.38237 * 119.99673 * 0.40316 * 22 21 20 24 24 C 1.38233 * 120.00278 * 359.85214 * 23 22 21 25 25 C 1.38236 * 120.00204 * 60.00338 * 20 5 3 26 26 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47045 * 300.00110 * 1 2 3 28 28 H 1.08997 * 109.46816 * 60.00475 * 1 2 3 29 29 H 1.09002 * 109.46764 * 179.97438 * 6 5 3 30 30 H 1.08994 * 109.47051 * 300.00031 * 6 5 3 31 31 H 1.09004 * 109.46990 * 60.00059 * 6 5 3 32 32 H 1.00897 * 110.99542 * 176.04626 * 7 5 3 33 33 H 1.09001 * 109.47392 * 60.00807 * 8 7 5 34 34 H 1.09001 * 109.47520 * 300.00529 * 8 7 5 35 35 H 1.09001 * 109.47002 * 299.99782 * 9 8 7 36 36 H 1.08993 * 109.46955 * 60.00219 * 9 8 7 37 37 H 1.09001 * 109.47289 * 299.99953 * 10 9 8 38 38 H 1.09004 * 109.47261 * 59.99697 * 10 9 8 39 39 H 0.97001 * 119.99673 * 179.97438 * 15 14 12 40 40 H 1.08008 * 119.99878 * 0.02562 * 21 20 5 41 41 H 1.07997 * 120.00659 * 180.22792 * 22 21 20 42 42 H 1.08001 * 120.00020 * 179.82688 * 23 22 21 43 43 H 1.08002 * 120.00477 * 179.97438 * 24 23 22 44 44 H 1.07994 * 119.99635 * 359.97438 * 25 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0070 2.6073 0.6101 7 7 4.1144 0.1676 0.7954 8 6 3.6389 0.2306 2.1839 9 6 4.2300 -0.9355 2.9788 10 6 3.7343 -0.8703 4.4247 11 16 4.4329 -2.2501 5.3649 12 6 3.7185 -1.9367 6.9448 13 1 3.0664 -1.0872 7.0837 14 6 3.9938 -2.7820 8.0109 15 7 4.7889 -3.8172 7.8417 16 14 3.2370 -2.4493 9.6859 17 1 2.3878 -1.2332 9.6129 18 1 2.4046 -3.6101 10.0923 19 1 4.3164 -2.2406 10.6842 20 6 4.0750 1.1772 -1.4146 21 6 4.9294 0.1512 -1.7727 22 6 5.3929 0.0592 -3.0718 23 6 5.0085 0.9981 -4.0108 24 6 4.1583 2.0271 -3.6515 25 6 3.6918 2.1169 -2.3533 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 5.0955 2.6641 0.6109 30 1 3.6003 3.4287 0.0203 31 1 3.6391 2.6779 1.6337 32 1 5.1227 0.1606 0.7584 33 1 2.5509 0.1663 2.1987 34 1 3.9533 1.1726 2.6333 35 1 3.9159 -1.8776 2.5295 36 1 5.3179 -0.8707 2.9640 37 1 4.0480 0.0719 4.8743 38 1 2.6463 -0.9351 4.4391 39 1 4.9816 -4.4076 8.5869 40 1 5.2321 -0.5807 -1.0384 41 1 6.0574 -0.7444 -3.3525 42 1 5.3727 0.9279 -5.0251 43 1 3.8583 2.7609 -4.3850 44 1 3.0275 2.9207 -2.0725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072517826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:50 Heat of formation + Delta-G solvation = -82.404453 kcal Electronic energy + Delta-G solvation = -24747.741861 eV Core-core repulsion = 21176.401062 eV Total energy + Delta-G solvation = -3571.340799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.14583 -40.18475 -38.24128 -37.58735 -35.06600 -34.58974 -32.12155 -31.58082 -29.89269 -28.97624 -27.85257 -26.63383 -25.21531 -23.55178 -23.15050 -22.32490 -20.90371 -19.57546 -18.71579 -18.48610 -17.64728 -17.21780 -16.89663 -16.63039 -16.32929 -16.30756 -15.74901 -15.46207 -15.02745 -14.82722 -14.69356 -14.63678 -14.28125 -14.12517 -13.74032 -13.43972 -13.36095 -13.27701 -13.14475 -13.01649 -12.94249 -12.89879 -12.46108 -12.39521 -12.15040 -11.93819 -11.84992 -11.71158 -11.52065 -11.36913 -11.15166 -10.31277 -9.84327 -9.77567 -9.58638 -8.64998 -8.37419 -6.12705 0.30068 0.49837 1.02210 1.31428 1.37784 1.48778 1.68806 1.74663 2.27866 2.75015 2.88694 2.96787 3.33201 3.42947 3.67181 3.82411 3.97100 4.06341 4.16525 4.20957 4.21893 4.26107 4.27320 4.33524 4.38420 4.50552 4.55633 4.63636 4.65680 4.69789 4.77217 4.78682 5.01282 5.01576 5.16141 5.18279 5.27299 5.29312 5.40320 5.50488 5.55703 5.63915 5.77966 6.08478 6.18524 6.22448 6.62724 7.05213 8.72120 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.002497 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.403547 B =11208.607770 C =11861.292407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.345 6.345 3 C 0.479 3.521 4 O -0.531 6.531 5 C 0.172 3.828 6 C -0.169 4.169 7 N -0.662 5.662 8 C 0.068 3.932 9 C -0.079 4.079 10 C -0.089 4.089 11 S -0.190 6.190 12 C -0.538 4.538 13 H 0.070 0.930 14 C 0.015 3.985 15 N -0.906 5.906 16 Si 0.993 3.007 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.095 4.095 21 C -0.098 4.098 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.125 0.875 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.365 0.635 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.271 0.729 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 11.697 -24.200 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.260 6.260 3 C 0.322 3.678 4 O -0.420 6.420 5 C 0.079 3.921 6 C -0.227 4.227 7 N -0.297 5.297 8 C -0.062 4.062 9 C -0.117 4.117 10 C -0.239 4.239 11 S 0.039 5.961 12 C -0.686 4.686 13 H 0.088 0.912 14 C -0.190 4.190 15 N -0.543 5.543 16 Si 0.815 3.185 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.096 4.096 21 C -0.116 4.116 22 C -0.142 4.142 23 C -0.133 4.133 24 C -0.143 4.143 25 C -0.142 4.142 26 H 0.143 0.857 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.187 0.813 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.426 10.529 -24.634 26.828 hybrid contribution -1.141 1.771 1.987 2.896 sum -2.567 12.299 -22.647 25.899 Atomic orbital electron populations 1.23552 0.75499 1.05517 1.02365 1.86654 1.24182 1.32483 1.82696 1.23755 0.91821 0.81325 0.70889 1.90637 1.67276 1.37154 1.46926 1.19483 0.86177 0.92623 0.93768 1.22450 1.03354 0.95399 1.01528 1.60565 1.15727 1.42674 1.10758 1.21945 0.99656 0.97479 0.87158 1.21061 1.00911 0.99004 0.90772 1.23148 1.01943 1.00225 0.98580 1.84584 1.65915 1.37365 1.08222 1.23065 1.34184 1.15637 0.95704 0.91153 1.26044 0.95383 0.94112 1.03415 1.70153 1.35456 1.15158 1.33494 0.84991 0.78218 0.78577 0.76735 1.18855 1.19660 1.19584 1.19311 1.00378 0.97717 0.92190 1.21256 0.96056 0.96794 0.97519 1.21512 1.00196 0.99746 0.92788 1.21569 0.96925 0.94138 1.00699 1.21361 0.97946 0.99370 0.95655 1.21120 1.00375 0.98610 0.94106 0.85654 0.92276 0.91547 0.88938 0.90603 0.91812 0.81280 0.92252 0.93508 0.91101 0.90684 0.91981 0.92487 0.91946 0.84056 0.83666 0.83507 0.84039 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.56 113.37 1.20 1.67 16 2 O -0.35 -9.04 9.63 -51.37 -0.49 -9.53 16 3 C 0.48 12.63 5.16 71.24 0.37 12.99 16 4 O -0.53 -15.70 15.84 21.95 0.35 -15.35 16 5 C 0.17 3.74 0.76 2.04 0.00 3.74 16 6 C -0.17 -3.30 7.58 71.98 0.55 -2.75 16 7 N -0.66 -14.31 4.88 -477.62 -2.33 -16.64 16 8 C 0.07 1.74 4.95 86.31 0.43 2.17 16 9 C -0.08 -2.42 5.48 30.60 0.17 -2.26 16 10 C -0.09 -3.57 5.67 71.98 0.41 -3.16 16 11 S -0.19 -10.03 21.44 -56.49 -1.21 -11.24 16 12 C -0.54 -31.19 9.50 67.96 0.65 -30.55 16 13 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 14 C 0.02 0.88 5.49 84.86 0.47 1.35 16 15 N -0.91 -54.64 13.22 21.65 0.29 -54.35 16 16 Si 0.99 44.11 29.55 68.60 2.03 46.14 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.10 -1.89 4.76 -19.86 -0.09 -1.99 16 21 C -0.10 -1.73 9.14 22.27 0.20 -1.53 16 22 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 23 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16 24 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 25 C -0.12 -2.33 8.82 22.27 0.20 -2.13 16 26 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.06 1.21 8.13 -2.38 -0.02 1.19 16 28 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.50 7.12 -2.39 -0.02 1.48 16 31 H 0.06 1.34 6.40 -2.39 -0.02 1.33 16 32 H 0.36 6.51 7.54 -89.70 -0.68 5.84 16 33 H 0.06 1.69 6.64 -2.39 -0.02 1.67 16 34 H 0.05 1.13 6.30 -2.39 -0.02 1.11 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.14 2.35 6.40 -2.91 -0.02 2.33 16 41 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 44 H 0.12 2.28 7.58 -2.91 -0.02 2.26 16 Total: -1.00 -71.27 377.27 4.15 -67.12 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.32 Total: 20.80 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 5.20 Total: -26.95 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -2.04 Total: -70.99 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.15 Total: -24.88 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -10.03 SS G_CDS: -1.21 Total: -11.24 kcal Total: -71.27 4.15 -67.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.282 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds