Wall clock time and date at job start Tue Mar 31 2020 14:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99442 * 2 1 4 4 H 1.09001 * 109.47741 * 358.37167 * 3 2 1 5 5 C 1.53003 * 109.47234 * 238.36895 * 3 2 1 6 6 N 1.46498 * 109.47283 * 59.59181 * 5 3 2 7 7 C 1.34771 * 120.00152 * 180.17932 * 6 5 3 8 8 O 1.21608 * 120.00120 * 359.97438 * 7 6 5 9 9 C 1.47431 * 120.00067 * 179.97438 * 7 6 5 10 10 C 1.39675 * 120.21263 * 359.94684 * 9 7 6 11 11 C 1.37811 * 119.93973 * 179.97438 * 10 9 7 12 12 C 1.38661 * 120.37811 * 0.03049 * 11 10 9 13 13 C 1.37912 * 120.43649 * 0.02562 * 12 11 10 14 14 C 1.39104 * 120.05324 * 359.95448 * 13 12 11 15 15 S 1.76200 * 120.19123 * 180.02562 * 14 13 12 16 16 C 1.76204 * 100.00057 * 355.90247 * 15 14 13 17 17 H 1.08007 * 119.99767 * 354.40124 * 16 15 14 18 18 C 1.38802 * 120.00192 * 174.40201 * 16 15 14 19 19 N 1.31552 * 120.00205 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47160 * 59.99562 * 20 18 16 22 22 H 1.48495 * 109.47259 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46766 * 299.99913 * 20 18 16 24 24 C 1.53001 * 109.47415 * 118.36828 * 3 2 1 25 25 C 1.53000 * 109.47774 * 179.97438 * 24 3 2 26 26 C 1.53003 * 109.46975 * 300.00226 * 24 3 2 27 27 H 1.08997 * 109.47353 * 302.51511 * 1 2 3 28 28 H 1.09001 * 109.47519 * 62.52050 * 1 2 3 29 29 H 1.09007 * 109.46771 * 182.51800 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.58802 * 5 3 2 31 31 H 1.09001 * 109.47276 * 179.59136 * 5 3 2 32 32 H 0.96999 * 119.99838 * 0.17149 * 6 5 3 33 33 H 1.07999 * 120.03172 * 0.05032 * 10 9 7 34 34 H 1.07993 * 119.81406 * 180.30454 * 11 10 9 35 35 H 1.08006 * 119.78146 * 179.97438 * 12 11 10 36 36 H 1.08006 * 119.96886 * 179.97438 * 13 12 11 37 37 H 0.96997 * 120.00336 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46698 * 59.99908 * 24 3 2 39 39 H 1.09001 * 109.46988 * 300.00205 * 25 24 3 40 40 H 1.09001 * 109.46998 * 59.99461 * 25 24 3 41 41 H 1.08995 * 109.47491 * 180.02562 * 25 24 3 42 42 H 1.08996 * 109.47153 * 59.99372 * 26 24 3 43 43 H 1.08998 * 109.47114 * 179.97438 * 26 24 3 44 44 H 1.08997 * 109.46949 * 299.99679 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2194 2.0553 -0.0292 5 6 2.9086 1.4638 -1.2282 6 7 2.1125 1.2750 -2.4434 7 6 2.6983 1.3658 -3.6537 8 8 3.8877 1.6050 -3.7372 9 6 1.8972 1.1752 -4.8766 10 6 0.5310 0.8991 -4.7859 11 6 -0.2126 0.7224 -5.9327 12 6 0.3877 0.8164 -7.1791 13 6 1.7356 1.0872 -7.2867 14 6 2.5033 1.2691 -6.1410 15 16 4.2257 1.6159 -6.2743 16 6 4.4288 1.4909 -8.0201 17 1 3.6045 1.1660 -8.6378 18 6 5.6481 1.8100 -8.6016 19 7 6.6522 2.2053 -7.8493 20 14 5.8632 1.6781 -10.4525 21 1 4.8963 2.5798 -11.1287 22 1 7.2473 2.0713 -10.8193 23 1 5.6169 0.2777 -10.8809 24 6 2.8436 1.4928 1.2693 25 6 3.4664 2.8903 1.2690 26 6 1.9451 1.3345 2.4975 27 1 -0.3634 0.5524 0.8665 28 1 -0.3634 0.4742 -0.9117 29 1 -0.3633 -1.0268 0.0452 30 1 3.7037 0.7189 -1.1952 31 1 3.3462 2.4622 -1.2321 32 1 1.1637 1.0844 -2.3768 33 1 0.0575 0.8254 -3.8181 34 1 -1.2698 0.5140 -5.8603 35 1 -0.2042 0.6758 -8.0716 36 1 2.1955 1.1583 -8.2614 37 1 7.5044 2.4279 -8.2556 38 1 3.6344 0.7431 1.2985 39 1 4.1066 3.0027 0.3940 40 1 2.6759 3.6403 1.2395 41 1 4.0606 3.0236 2.1730 42 1 1.5018 0.3387 2.4974 43 1 2.5390 1.4675 3.4017 44 1 1.1544 2.0841 2.4682 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074030832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:38 Heat of formation + Delta-G solvation = -65.163807 kcal Electronic energy + Delta-G solvation = -24838.760168 eV Core-core repulsion = 21268.166980 eV Total energy + Delta-G solvation = -3570.593188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.77184 -38.77284 -37.33918 -35.26231 -34.05679 -32.73961 -30.88225 -30.25995 -28.83858 -27.38913 -26.35765 -25.81237 -23.84263 -22.45425 -21.80240 -20.65357 -19.86486 -18.23860 -17.22193 -17.09724 -16.05059 -15.88203 -15.43523 -15.13651 -14.89265 -14.69289 -14.47555 -13.99355 -13.90259 -13.68393 -13.47739 -13.11518 -12.96891 -12.93533 -12.64588 -12.38897 -12.04260 -11.88918 -11.57188 -11.55194 -11.43117 -11.20751 -11.17145 -11.04096 -10.93440 -10.79282 -10.30938 -9.85876 -9.75021 -9.55923 -9.47969 -8.74250 -8.69937 -8.31239 -8.04577 -6.51768 -6.44325 -4.15157 1.55546 2.03227 3.11824 3.15045 3.19195 3.42282 3.47735 3.52615 3.56925 4.08071 4.51218 4.51855 4.63277 4.72908 4.92389 4.96581 5.06046 5.11393 5.14231 5.21134 5.32997 5.38536 5.40122 5.44476 5.46117 5.60723 5.60999 5.63188 5.71135 5.86201 5.87880 6.00947 6.05619 6.11042 6.12914 6.40313 6.60598 6.77648 6.86668 6.98300 7.03994 7.14631 7.46256 7.60830 7.92829 8.17502 8.82588 9.01592 10.58850 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.003191 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.441355 B = 8771.828536 C =10174.141797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.376 6.376 3 C 0.082 3.918 4 H 0.068 0.932 5 C 0.113 3.887 6 N -0.734 5.734 7 C 0.552 3.448 8 O -0.510 6.510 9 C -0.177 4.177 10 C -0.061 4.061 11 C -0.187 4.187 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.056 4.056 15 S 0.187 5.813 16 C -0.598 4.598 17 H 0.091 0.909 18 C 0.084 3.916 19 N -0.858 5.858 20 Si 0.919 3.081 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.270 1.270 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.145 4.145 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.392 0.608 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.275 0.725 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.263 -1.157 16.032 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.024 3.976 4 H 0.086 0.914 5 C -0.011 4.011 6 N -0.389 5.389 7 C 0.341 3.659 8 O -0.387 6.387 9 C -0.192 4.192 10 C -0.081 4.081 11 C -0.212 4.212 12 C -0.099 4.099 13 C -0.179 4.179 14 C -0.176 4.176 15 S 0.451 5.549 16 C -0.744 4.744 17 H 0.108 0.892 18 C -0.127 4.127 19 N -0.491 5.491 20 Si 0.744 3.256 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.122 4.122 25 C -0.210 4.210 26 C -0.202 4.202 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.226 0.774 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.795 -0.741 16.731 19.925 hybrid contribution -1.646 -0.276 -2.065 2.655 sum -12.441 -1.016 14.666 19.259 Atomic orbital electron populations 1.22883 0.81294 1.02887 0.99764 1.87973 1.19309 1.27258 1.94901 1.22496 0.95631 0.85213 0.94249 0.91362 1.21678 0.94393 1.02480 0.82578 1.45715 1.12368 1.75540 1.05253 1.18302 0.87361 0.77235 0.82982 1.90779 1.14870 1.47221 1.85806 1.19110 0.93837 1.14628 0.91650 1.20861 0.92565 0.97154 0.97502 1.20619 0.99034 1.09015 0.92548 1.21080 0.94685 0.97180 0.96940 1.21446 0.93743 1.03806 0.98924 1.23082 1.03395 0.97300 0.93866 1.84772 0.92754 1.72332 1.05012 1.24041 1.01604 1.52798 0.95967 0.89176 1.25090 0.94647 0.93098 0.99864 1.69965 1.02772 1.39928 1.36393 0.86209 0.77728 0.79176 0.82508 1.19496 1.20554 1.19478 1.21362 0.98405 0.98606 0.93856 1.21931 1.00948 0.95444 1.02692 1.21789 0.99393 1.01908 0.97101 0.93995 0.94188 0.89535 0.90828 0.90257 0.77368 0.87460 0.87119 0.87021 0.84325 0.91477 0.89936 0.91575 0.92564 0.92122 0.92113 0.92481 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.62 101.05 1.07 1.29 16 2 O -0.38 -4.01 9.40 -35.23 -0.33 -4.34 16 3 C 0.08 0.82 1.92 -26.73 -0.05 0.77 16 4 H 0.07 0.59 7.60 -51.93 -0.39 0.20 16 5 C 0.11 1.49 5.00 -4.04 -0.02 1.47 16 6 N -0.73 -10.99 5.39 -61.38 -0.33 -11.33 16 7 C 0.55 11.01 7.75 -12.52 -0.10 10.92 16 8 O -0.51 -12.16 13.77 5.27 0.07 -12.08 16 9 C -0.18 -3.58 5.89 -104.75 -0.62 -4.19 16 10 C -0.06 -0.98 9.53 -39.20 -0.37 -1.35 16 11 C -0.19 -2.91 10.02 -39.58 -0.40 -3.31 16 12 C -0.08 -1.32 10.03 -39.54 -0.40 -1.72 16 13 C -0.15 -3.25 9.24 -39.38 -0.36 -3.62 16 14 C -0.06 -1.31 6.15 -38.40 -0.24 -1.54 16 15 S 0.19 5.07 18.56 -107.50 -2.00 3.07 16 16 C -0.60 -16.61 9.03 30.94 0.28 -16.33 16 17 H 0.09 2.37 4.90 -52.48 -0.26 2.11 16 18 C 0.08 2.32 5.49 -17.46 -0.10 2.22 16 19 N -0.86 -24.89 13.22 55.49 0.73 -24.16 16 20 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C -0.10 -0.90 2.72 -90.62 -0.25 -1.15 16 25 C -0.15 -1.24 8.84 37.16 0.33 -0.91 16 26 C -0.14 -1.06 9.05 37.16 0.34 -0.73 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.28 7.42 -51.93 -0.39 -0.11 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.06 6.45 -51.93 -0.33 0.72 16 32 H 0.39 4.85 5.56 -40.82 -0.23 4.62 16 33 H 0.11 1.33 6.40 -52.49 -0.34 0.99 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.14 3.04 4.96 -52.48 -0.26 2.78 16 37 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.60 6.44 -51.93 -0.33 0.27 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -32.45 369.48 -8.48 -40.92 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.29 Total: 4.78 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -0.88 Total: -18.19 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.40 Total: -35.48 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.26 Total: -16.42 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -2.00 Total: 3.07 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.45 -8.48 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074030832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.242 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds