Wall clock time and date at job start Tue Mar 31 2020 14:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99442 * 2 1 4 4 H 1.09001 * 109.47741 * 358.37167 * 3 2 1 5 5 C 1.53003 * 109.47234 * 238.36895 * 3 2 1 6 6 N 1.46498 * 109.47283 * 59.59181 * 5 3 2 7 7 C 1.34771 * 120.00152 * 180.17932 * 6 5 3 8 8 O 1.21608 * 120.00120 * 359.97438 * 7 6 5 9 9 C 1.47431 * 120.00067 * 179.97438 * 7 6 5 10 10 C 1.39675 * 120.21263 * 359.94684 * 9 7 6 11 11 C 1.37811 * 119.93973 * 179.97438 * 10 9 7 12 12 C 1.38661 * 120.37811 * 0.03049 * 11 10 9 13 13 C 1.37912 * 120.43649 * 0.02562 * 12 11 10 14 14 C 1.39104 * 120.05324 * 359.95448 * 13 12 11 15 15 S 1.76200 * 120.19123 * 180.02562 * 14 13 12 16 16 C 1.76204 * 100.00057 * 355.90247 * 15 14 13 17 17 H 1.08007 * 119.99767 * 354.40124 * 16 15 14 18 18 C 1.38802 * 120.00192 * 174.40201 * 16 15 14 19 19 N 1.31552 * 120.00205 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47160 * 59.99562 * 20 18 16 22 22 H 1.48495 * 109.47259 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46766 * 299.99913 * 20 18 16 24 24 C 1.53001 * 109.47415 * 118.36828 * 3 2 1 25 25 C 1.53000 * 109.47774 * 179.97438 * 24 3 2 26 26 C 1.53003 * 109.46975 * 300.00226 * 24 3 2 27 27 H 1.08997 * 109.47353 * 302.51511 * 1 2 3 28 28 H 1.09001 * 109.47519 * 62.52050 * 1 2 3 29 29 H 1.09007 * 109.46771 * 182.51800 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.58802 * 5 3 2 31 31 H 1.09001 * 109.47276 * 179.59136 * 5 3 2 32 32 H 0.96999 * 119.99838 * 0.17149 * 6 5 3 33 33 H 1.07999 * 120.03172 * 0.05032 * 10 9 7 34 34 H 1.07993 * 119.81406 * 180.30454 * 11 10 9 35 35 H 1.08006 * 119.78146 * 179.97438 * 12 11 10 36 36 H 1.08006 * 119.96886 * 179.97438 * 13 12 11 37 37 H 0.96997 * 120.00336 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.46698 * 59.99908 * 24 3 2 39 39 H 1.09001 * 109.46988 * 300.00205 * 25 24 3 40 40 H 1.09001 * 109.46998 * 59.99461 * 25 24 3 41 41 H 1.08995 * 109.47491 * 180.02562 * 25 24 3 42 42 H 1.08996 * 109.47153 * 59.99372 * 26 24 3 43 43 H 1.08998 * 109.47114 * 179.97438 * 26 24 3 44 44 H 1.08997 * 109.46949 * 299.99679 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2194 2.0553 -0.0292 5 6 2.9086 1.4638 -1.2282 6 7 2.1125 1.2750 -2.4434 7 6 2.6983 1.3658 -3.6537 8 8 3.8877 1.6050 -3.7372 9 6 1.8972 1.1752 -4.8766 10 6 0.5310 0.8991 -4.7859 11 6 -0.2126 0.7224 -5.9327 12 6 0.3877 0.8164 -7.1791 13 6 1.7356 1.0872 -7.2867 14 6 2.5033 1.2691 -6.1410 15 16 4.2257 1.6159 -6.2743 16 6 4.4288 1.4909 -8.0201 17 1 3.6045 1.1660 -8.6378 18 6 5.6481 1.8100 -8.6016 19 7 6.6522 2.2053 -7.8493 20 14 5.8632 1.6781 -10.4525 21 1 4.8963 2.5798 -11.1287 22 1 7.2473 2.0713 -10.8193 23 1 5.6169 0.2777 -10.8809 24 6 2.8436 1.4928 1.2693 25 6 3.4664 2.8903 1.2690 26 6 1.9451 1.3345 2.4975 27 1 -0.3634 0.5524 0.8665 28 1 -0.3634 0.4742 -0.9117 29 1 -0.3633 -1.0268 0.0452 30 1 3.7037 0.7189 -1.1952 31 1 3.3462 2.4622 -1.2321 32 1 1.1637 1.0844 -2.3768 33 1 0.0575 0.8254 -3.8181 34 1 -1.2698 0.5140 -5.8603 35 1 -0.2042 0.6758 -8.0716 36 1 2.1955 1.1583 -8.2614 37 1 7.5044 2.4279 -8.2556 38 1 3.6344 0.7431 1.2985 39 1 4.1066 3.0027 0.3940 40 1 2.6759 3.6403 1.2395 41 1 4.0606 3.0236 2.1730 42 1 1.5018 0.3387 2.4974 43 1 2.5390 1.4675 3.4017 44 1 1.1544 2.0841 2.4682 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074030832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:37 Heat of formation + Delta-G solvation = -86.709345 kcal Electronic energy + Delta-G solvation = -24839.694453 eV Core-core repulsion = 21268.166980 eV Total energy + Delta-G solvation = -3571.527473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12423 -39.81251 -38.83167 -36.04494 -35.36378 -34.76540 -32.32484 -31.79100 -29.83572 -28.00971 -27.84238 -27.10939 -25.03695 -23.74682 -23.21741 -21.80964 -21.02517 -19.93665 -18.83218 -17.87622 -17.44567 -17.18558 -17.07545 -16.29964 -16.09226 -16.06103 -15.53361 -15.42956 -15.28456 -14.91854 -14.68090 -14.36178 -14.18731 -14.05666 -13.64990 -13.41489 -13.30814 -12.98268 -12.96989 -12.89441 -12.72104 -12.55160 -12.21912 -12.18758 -12.05290 -11.72991 -11.53108 -11.49441 -11.40470 -11.30377 -10.47721 -10.41426 -10.14093 -9.91158 -9.76742 -8.46978 -8.44813 -6.24563 0.03228 0.53581 1.26374 1.37998 1.43918 1.64244 2.01362 2.15045 2.26904 2.78179 2.87789 3.04343 3.24702 3.69094 3.82188 3.96822 3.99238 4.01938 4.22949 4.26609 4.42781 4.51698 4.57735 4.60060 4.61426 4.66015 4.70974 4.81030 4.84226 4.86996 4.95356 5.01832 5.05789 5.10456 5.24287 5.35717 5.38143 5.44035 5.45491 5.50376 5.57362 5.67169 6.09678 6.16463 6.28147 6.59671 6.95952 7.34416 8.60592 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.003191 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.441355 B = 8771.828536 C =10174.141797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.397 6.397 3 C 0.094 3.906 4 H 0.090 0.910 5 C 0.110 3.890 6 N -0.710 5.710 7 C 0.544 3.456 8 O -0.557 6.557 9 C -0.183 4.183 10 C -0.054 4.054 11 C -0.156 4.156 12 C -0.069 4.069 13 C -0.176 4.176 14 C -0.072 4.072 15 S 0.064 5.936 16 C -0.604 4.604 17 H 0.095 0.905 18 C 0.024 3.976 19 N -0.906 5.906 20 Si 0.993 3.007 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.262 1.262 24 C -0.102 4.102 25 C -0.152 4.152 26 C -0.139 4.139 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.120 0.880 37 H 0.276 0.724 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.379 -1.827 16.814 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.316 6.316 3 C 0.035 3.965 4 H 0.108 0.892 5 C -0.014 4.014 6 N -0.364 5.364 7 C 0.333 3.667 8 O -0.437 6.437 9 C -0.197 4.197 10 C -0.074 4.074 11 C -0.179 4.179 12 C -0.089 4.089 13 C -0.201 4.201 14 C -0.190 4.190 15 S 0.323 5.677 16 C -0.751 4.751 17 H 0.113 0.887 18 C -0.181 4.181 19 N -0.540 5.540 20 Si 0.814 3.186 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.122 4.122 25 C -0.209 4.209 26 C -0.196 4.196 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.174 0.826 34 H 0.185 0.815 35 H 0.169 0.831 36 H 0.138 0.862 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.055 -1.441 17.570 23.844 hybrid contribution -0.467 -0.163 -2.085 2.143 sum -16.523 -1.604 15.485 22.701 Atomic orbital electron populations 1.23128 0.79525 1.04016 1.01110 1.87961 1.21349 1.27390 1.94941 1.22399 0.95615 0.85830 0.92616 0.89194 1.21817 0.94730 1.01500 0.83346 1.45517 1.13152 1.73446 1.04268 1.18550 0.86873 0.76866 0.84429 1.90780 1.17070 1.49368 1.86525 1.19487 0.95836 1.13756 0.90601 1.21397 0.90390 0.95110 1.00496 1.21326 1.01453 1.04157 0.90992 1.21554 0.92857 0.94835 0.99703 1.21474 0.95720 1.05405 0.97504 1.22984 1.00723 0.99234 0.96084 1.84960 0.98513 1.77912 1.06353 1.24244 1.02123 1.52942 0.95778 0.88688 1.26160 0.94139 0.92723 1.05113 1.70127 1.03345 1.42062 1.38500 0.85082 0.77994 0.79520 0.75973 1.18372 1.19865 1.18621 1.21350 0.98259 0.98404 0.94154 1.21920 1.01144 0.95482 1.02353 1.21738 0.99404 1.02108 0.96327 0.92357 0.93055 0.88689 0.93264 0.90697 0.75423 0.82588 0.81501 0.83131 0.86216 0.91504 0.91467 0.93363 0.91403 0.91186 0.92433 0.91782 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.62 113.37 1.20 1.41 16 2 O -0.40 -7.54 9.40 -148.98 -1.40 -8.94 16 3 C 0.09 1.69 1.92 30.60 0.06 1.75 16 4 H 0.09 1.25 7.60 -2.39 -0.02 1.23 16 5 C 0.11 2.92 5.00 86.38 0.43 3.35 16 6 N -0.71 -20.45 5.39 -466.37 -2.52 -22.97 16 7 C 0.54 22.12 7.75 86.67 0.67 22.79 16 8 O -0.56 -28.56 13.77 -4.06 -0.06 -28.61 16 9 C -0.18 -7.27 5.89 -19.95 -0.12 -7.39 16 10 C -0.05 -1.49 9.53 22.52 0.21 -1.27 16 11 C -0.16 -3.83 10.02 22.27 0.22 -3.61 16 12 C -0.07 -2.07 10.03 22.29 0.22 -1.84 16 13 C -0.18 -7.39 9.24 22.40 0.21 -7.18 16 14 C -0.07 -3.45 6.15 23.04 0.14 -3.31 16 15 S 0.06 3.76 18.56 -56.49 -1.05 2.71 16 16 C -0.60 -35.82 9.03 67.95 0.61 -35.21 16 17 H 0.10 5.28 4.90 -2.91 -0.01 5.27 16 18 C 0.02 1.41 5.49 84.87 0.47 1.88 16 19 N -0.91 -56.25 13.22 21.64 0.29 -55.96 16 20 Si 0.99 44.37 29.55 68.60 2.03 46.40 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 C -0.10 -1.67 2.72 -10.79 -0.03 -1.70 16 25 C -0.15 -2.34 8.84 71.98 0.64 -1.70 16 26 C -0.14 -1.70 9.05 71.98 0.65 -1.05 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.05 0.46 7.42 -2.39 -0.02 0.44 16 29 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.08 6.45 -2.39 -0.02 2.06 16 32 H 0.41 8.68 5.56 -92.71 -0.52 8.16 16 33 H 0.16 2.77 6.40 -2.91 -0.02 2.75 16 34 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.12 5.43 4.96 -2.91 -0.01 5.41 16 37 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.05 0.91 6.44 -2.39 -0.02 0.90 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 0.76 7.68 -2.39 -0.02 0.74 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -80.52 369.48 3.39 -77.13 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.50 Total: 23.32 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 5.60 Total: -33.08 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.23 Total: -78.93 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.46 Total: -37.55 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.05 Total: 2.71 kcal Total: -80.52 3.39 -77.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074030832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.576 kcal (2) G-P(sol) polarization free energy of solvation -80.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds