Wall clock time and date at job start Tue Mar 31 2020 14:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99747 * 2 1 4 4 H 1.08999 * 109.47314 * 25.84128 * 3 2 1 5 5 C 1.53000 * 109.46598 * 145.83608 * 3 2 1 6 6 N 1.46496 * 109.47288 * 299.99959 * 5 3 2 7 7 C 1.34778 * 119.99824 * 180.02562 * 6 5 3 8 8 O 1.21610 * 120.00448 * 359.97438 * 7 6 5 9 9 C 1.47434 * 119.99902 * 179.72709 * 7 6 5 10 10 C 1.39676 * 120.21518 * 0.27556 * 9 7 6 11 11 C 1.37808 * 119.94180 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.37789 * 0.02562 * 11 10 9 13 13 C 1.37907 * 120.44033 * 0.02562 * 12 11 10 14 14 C 1.39120 * 120.04835 * 359.67973 * 13 12 11 15 15 S 1.76202 * 120.18780 * 180.29530 * 14 13 12 16 16 C 1.76194 * 100.00144 * 353.19677 * 15 14 13 17 17 H 1.08005 * 120.00241 * 4.43650 * 16 15 14 18 18 C 1.38807 * 120.00128 * 184.42893 * 16 15 14 19 19 N 1.31554 * 119.99628 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47284 * 59.99694 * 20 18 16 22 22 H 1.48500 * 109.47320 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46763 * 300.00114 * 20 18 16 24 24 C 1.52990 * 109.47486 * 265.83693 * 3 2 1 25 25 C 1.53004 * 109.47538 * 179.74270 * 24 3 2 26 26 C 1.53005 * 109.47375 * 299.74413 * 24 3 2 27 27 H 1.09002 * 109.47412 * 64.93255 * 1 2 3 28 28 H 1.09005 * 109.47249 * 184.92983 * 1 2 3 29 29 H 1.09001 * 109.47333 * 304.92518 * 1 2 3 30 30 H 1.09000 * 109.47127 * 180.02562 * 5 3 2 31 31 H 1.09003 * 109.47573 * 60.00338 * 5 3 2 32 32 H 0.97001 * 120.00529 * 0.02562 * 6 5 3 33 33 H 1.08004 * 120.03064 * 359.97438 * 10 9 7 34 34 H 1.08001 * 119.80843 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.77338 * 180.02562 * 12 11 10 36 36 H 1.07994 * 119.97495 * 180.02562 * 13 12 11 37 37 H 0.96999 * 119.99639 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47363 * 59.74434 * 24 3 2 39 39 H 1.09005 * 109.46911 * 65.65059 * 25 24 3 40 40 H 1.08994 * 109.47348 * 185.65399 * 25 24 3 41 41 H 1.09003 * 109.46746 * 305.65978 * 25 24 3 42 42 H 1.09000 * 109.46781 * 59.99824 * 26 24 3 43 43 H 1.08997 * 109.47449 * 180.02562 * 26 24 3 44 44 H 1.09001 * 109.46892 * 300.00310 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3130 2.0136 0.4479 5 6 3.3080 1.2858 0.8101 6 7 3.0177 0.8805 2.1876 7 6 4.0161 0.7928 3.0888 8 8 5.1579 1.0497 2.7584 9 6 3.7232 0.3907 4.4767 10 6 2.4135 0.0940 4.8610 11 6 2.1460 -0.2808 6.1599 12 6 3.1704 -0.3651 7.0905 13 6 4.4690 -0.0747 6.7283 14 6 4.7604 0.2996 5.4205 15 16 6.4194 0.6639 4.9518 16 6 7.2045 0.5955 6.5277 17 1 6.6398 0.3018 7.4002 18 6 8.5490 0.9190 6.6479 19 7 9.2369 1.2771 5.5852 20 14 9.3817 0.8458 8.3184 21 1 9.2960 -0.5366 8.8540 22 1 10.8078 1.2354 8.1782 23 1 8.7028 1.7810 9.2511 24 6 2.3133 1.7288 -1.4386 25 6 2.9296 3.1292 -1.4391 26 6 3.2969 0.7385 -2.0652 27 1 -0.3634 0.4354 -0.9309 28 1 -0.3634 -1.0239 0.0883 29 1 -0.3634 0.5883 0.8426 30 1 3.7511 2.2817 0.8105 31 1 4.0053 0.5777 0.3622 32 1 2.1071 0.6751 2.4512 33 1 1.6110 0.1590 4.1410 34 1 1.1325 -0.5093 6.4548 35 1 2.9498 -0.6602 8.1057 36 1 5.2612 -0.1432 7.4591 37 1 10.1765 1.5028 5.6691 38 1 1.3894 1.7384 -2.0169 39 1 3.9019 3.0984 -0.9472 40 1 3.0528 3.4717 -2.4665 41 1 2.2732 3.8152 -0.9036 42 1 2.8578 -0.2591 -2.0649 43 1 3.5132 1.0404 -3.0900 44 1 4.2208 0.7290 -1.4869 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074030834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:41 Heat of formation + Delta-G solvation = -63.472685 kcal Electronic energy + Delta-G solvation = -24893.131257 eV Core-core repulsion = 21322.611401 eV Total energy + Delta-G solvation = -3570.519856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.76741 -38.79246 -37.32486 -35.37885 -33.93093 -32.72428 -30.78612 -30.24333 -28.48080 -27.40864 -26.32521 -25.79771 -24.24030 -22.72197 -21.85100 -20.21690 -19.71397 -18.15024 -17.20875 -16.80837 -16.48684 -15.85048 -15.34203 -15.13337 -14.83153 -14.63124 -14.39913 -14.14123 -13.82972 -13.63471 -13.50439 -13.09637 -12.99217 -12.95439 -12.67999 -12.12681 -12.11275 -11.79835 -11.55911 -11.49165 -11.44093 -11.19637 -11.16180 -11.02955 -10.92438 -10.65847 -10.29142 -9.83205 -9.74037 -9.53025 -9.51015 -8.71849 -8.67290 -8.29367 -8.02718 -6.50154 -6.42746 -4.13551 1.57273 2.04701 3.12669 3.15964 3.19914 3.43922 3.48068 3.57580 3.58785 4.09296 4.47726 4.52925 4.64987 4.78023 4.97864 4.99075 5.07786 5.09072 5.16163 5.20170 5.36169 5.39746 5.43578 5.45656 5.51082 5.62096 5.63849 5.72034 5.80933 5.88025 5.89459 6.03845 6.12859 6.14029 6.23385 6.41815 6.62068 6.80456 6.88476 6.97157 7.05366 7.15833 7.47842 7.62349 7.96879 8.18926 8.85137 9.02993 10.60262 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.003320 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.881184 B = 8431.634504 C = 9897.850625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.081 3.919 4 H 0.066 0.934 5 C 0.122 3.878 6 N -0.733 5.733 7 C 0.552 3.448 8 O -0.510 6.510 9 C -0.176 4.176 10 C -0.060 4.060 11 C -0.187 4.187 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.056 4.056 15 S 0.185 5.815 16 C -0.598 4.598 17 H 0.091 0.909 18 C 0.084 3.916 19 N -0.858 5.858 20 Si 0.919 3.081 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.270 1.270 24 C -0.110 4.110 25 C -0.153 4.153 26 C -0.147 4.147 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.394 0.606 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.275 0.725 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.733 0.205 -10.372 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.023 3.977 4 H 0.084 0.916 5 C -0.002 4.002 6 N -0.388 5.388 7 C 0.341 3.659 8 O -0.388 6.388 9 C -0.191 4.191 10 C -0.080 4.080 11 C -0.212 4.212 12 C -0.099 4.099 13 C -0.179 4.179 14 C -0.176 4.176 15 S 0.449 5.551 16 C -0.744 4.744 17 H 0.108 0.892 18 C -0.127 4.127 19 N -0.491 5.491 20 Si 0.744 3.256 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.129 4.129 25 C -0.210 4.210 26 C -0.205 4.205 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.229 0.771 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.652 0.612 -11.844 19.638 hybrid contribution -0.903 -0.216 2.379 2.554 sum -16.555 0.396 -9.465 19.074 Atomic orbital electron populations 1.22825 0.81369 1.02782 0.99821 1.87999 1.19262 1.27217 1.94892 1.22489 0.94939 0.85021 0.95231 0.91570 1.21522 0.95742 1.01515 0.81391 1.45702 1.10836 1.72299 1.09927 1.18299 0.84698 0.77746 0.85154 1.90782 1.20144 1.48624 1.79213 1.19122 0.93464 1.13425 0.93100 1.20885 0.94364 0.96879 0.95921 1.20625 0.98453 1.08304 0.93819 1.21075 0.92959 0.97390 0.98490 1.21431 0.97151 1.03147 0.96185 1.23078 1.01985 0.97209 0.95356 1.84752 0.89282 1.72436 1.08587 1.24041 0.98849 1.53778 0.97738 0.89185 1.25085 0.96275 0.93132 0.98215 1.69970 1.09561 1.40417 1.29144 0.86210 0.78175 0.79139 0.82090 1.19497 1.20571 1.19506 1.21490 0.99839 0.96016 0.95581 1.21922 1.01581 0.95331 1.02200 1.21831 0.99287 0.99246 1.00099 0.94261 0.89618 0.93986 0.90140 0.90486 0.77103 0.87290 0.87127 0.87045 0.84396 0.91510 0.90996 0.91579 0.92263 0.92581 0.91899 0.92928 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.88 101.05 1.10 1.31 16 2 O -0.38 -3.95 9.42 -35.23 -0.33 -4.29 16 3 C 0.08 0.80 2.03 -26.74 -0.05 0.75 16 4 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 5 C 0.12 1.61 4.66 -4.04 -0.02 1.59 16 6 N -0.73 -11.00 5.40 -61.38 -0.33 -11.33 16 7 C 0.55 11.01 7.75 -12.51 -0.10 10.92 16 8 O -0.51 -12.17 13.77 5.27 0.07 -12.09 16 9 C -0.18 -3.56 5.89 -104.75 -0.62 -4.18 16 10 C -0.06 -0.98 9.53 -39.20 -0.37 -1.35 16 11 C -0.19 -2.93 10.02 -39.58 -0.40 -3.33 16 12 C -0.08 -1.33 10.03 -39.55 -0.40 -1.73 16 13 C -0.15 -3.26 9.25 -39.38 -0.36 -3.62 16 14 C -0.06 -1.31 6.15 -38.39 -0.24 -1.54 16 15 S 0.19 5.03 18.56 -107.50 -2.00 3.03 16 16 C -0.60 -16.64 9.08 30.94 0.28 -16.36 16 17 H 0.09 2.37 4.84 -52.48 -0.25 2.11 16 18 C 0.08 2.32 5.49 -17.46 -0.10 2.22 16 19 N -0.86 -24.94 13.22 55.49 0.73 -24.21 16 20 Si 0.92 20.82 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 24 C -0.11 -0.95 2.96 -90.62 -0.27 -1.22 16 25 C -0.15 -1.26 8.68 37.16 0.32 -0.93 16 26 C -0.15 -1.40 8.69 37.16 0.32 -1.08 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.26 7.98 -51.93 -0.41 -0.15 16 30 H 0.08 1.08 6.57 -51.93 -0.34 0.74 16 31 H 0.08 1.14 6.42 -51.93 -0.33 0.80 16 32 H 0.39 4.92 6.38 -40.82 -0.26 4.66 16 33 H 0.11 1.36 6.40 -52.48 -0.34 1.03 16 34 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.14 3.03 4.96 -52.49 -0.26 2.77 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.61 6.75 -51.93 -0.35 0.26 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.63 7.69 -51.93 -0.40 0.23 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.67 6.42 -51.93 -0.33 0.34 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -32.41 367.69 -8.43 -40.84 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.20 Total: 5.27 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -0.89 Total: -18.56 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.40 Total: -35.54 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.26 Total: -16.38 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -2.00 Total: 3.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.41 -8.43 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074030834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.632 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds