Wall clock time and date at job start Tue Mar 31 2020 14:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47126 * 2 1 4 4 C 1.52997 * 109.47264 * 120.00129 * 2 1 3 5 5 C 1.53010 * 109.47109 * 59.99821 * 4 2 1 6 6 O 1.42897 * 109.47162 * 299.99833 * 4 2 1 7 7 C 1.52992 * 109.47258 * 179.97438 * 4 2 1 8 8 N 1.46505 * 109.47514 * 185.00017 * 7 4 2 9 9 C 1.34772 * 120.00364 * 180.02562 * 8 7 4 10 10 O 1.21614 * 119.99904 * 0.02562 * 9 8 7 11 11 C 1.47424 * 120.00084 * 180.02562 * 9 8 7 12 12 C 1.39673 * 120.21861 * 0.24995 * 11 9 8 13 13 C 1.37801 * 119.94403 * 180.27257 * 12 11 9 14 14 C 1.38666 * 120.37946 * 359.73245 * 13 12 11 15 15 C 1.37910 * 120.43573 * 0.02562 * 14 13 12 16 16 C 1.39115 * 120.05151 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18617 * 180.02562 * 16 15 14 18 18 C 1.76194 * 100.00243 * 353.16114 * 17 16 15 19 19 H 1.07995 * 120.00099 * 354.34284 * 18 17 16 20 20 C 1.38808 * 119.99872 * 174.34821 * 18 17 16 21 21 N 1.31557 * 120.00032 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00267 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47088 * 89.99914 * 22 20 18 24 24 H 1.48499 * 109.47298 * 210.00147 * 22 20 18 25 25 H 1.48497 * 109.47183 * 330.00404 * 22 20 18 26 26 H 1.08999 * 109.46492 * 299.99927 * 1 2 3 27 27 H 1.08993 * 109.46891 * 59.99494 * 1 2 3 28 28 H 1.08998 * 109.46805 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46492 * 240.00073 * 2 1 3 30 30 H 1.08999 * 109.47376 * 60.00614 * 3 2 1 31 31 H 1.09004 * 109.47291 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47125 * 300.00039 * 3 2 1 33 33 H 1.08998 * 109.46807 * 179.97438 * 5 4 2 34 34 H 1.08997 * 109.46713 * 299.99798 * 5 4 2 35 35 H 1.08995 * 109.46636 * 59.99736 * 5 4 2 36 36 H 0.96694 * 114.00254 * 300.00138 * 6 4 2 37 37 H 1.08998 * 109.47028 * 64.99982 * 7 4 2 38 38 H 1.09003 * 109.47775 * 305.00220 * 7 4 2 39 39 H 0.97001 * 119.99234 * 0.02562 * 8 7 4 40 40 H 1.08008 * 120.02716 * 0.02562 * 12 11 9 41 41 H 1.07999 * 119.81624 * 179.74244 * 13 12 11 42 42 H 1.07997 * 119.78096 * 180.02562 * 14 13 12 43 43 H 1.08002 * 119.97140 * 180.02562 * 15 14 13 44 44 H 0.96994 * 120.00489 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 8 1.5638 -0.0476 2.4160 7 6 3.5700 -0.7218 1.2489 8 7 4.0584 -1.5141 2.3803 9 6 5.3834 -1.6554 2.5821 10 8 6.1737 -1.1248 1.8252 11 6 5.8748 -2.4531 3.7203 12 6 4.9712 -3.0688 4.5894 13 6 5.4367 -3.8085 5.6548 14 6 6.7996 -3.9509 5.8675 15 6 7.7056 -3.3539 5.0163 16 6 7.2555 -2.6031 3.9350 17 16 8.4100 -1.8394 2.8449 18 6 9.9113 -2.1784 3.7026 19 1 9.8834 -2.6444 4.6765 20 6 11.1298 -1.8466 3.1266 21 7 12.2508 -2.0993 3.7672 22 14 11.1781 -1.0412 1.4419 23 1 11.1316 0.4350 1.5974 24 1 12.4316 -1.4263 0.7449 25 1 10.0096 -1.4919 0.6441 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.8938 -2.6778 2.1389 34 1 0.4401 -2.1638 1.2493 35 1 1.8933 -2.6776 0.3592 36 1 1.8491 0.8739 2.4821 37 1 3.9337 0.3018 1.3382 38 1 3.9331 -1.1563 0.3175 39 1 3.4280 -1.9370 2.9842 40 1 3.9085 -2.9619 4.4288 41 1 4.7362 -4.2802 6.3279 42 1 7.1537 -4.5331 6.7053 43 1 8.7654 -3.4700 5.1888 44 1 13.1023 -1.8671 3.3650 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075253663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:04 Heat of formation + Delta-G solvation = -69.595810 kcal Electronic energy + Delta-G solvation = -25104.218318 eV Core-core repulsion = 21533.432943 eV Total energy + Delta-G solvation = -3570.785374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.11939 -38.99640 -37.44788 -34.27311 -34.16342 -32.70702 -31.14893 -30.36989 -30.17764 -28.18037 -26.00341 -25.90183 -23.61244 -22.37389 -21.91279 -20.35899 -19.88388 -18.44740 -17.33390 -16.90120 -16.03267 -15.74845 -15.49270 -15.30026 -14.91167 -14.78695 -14.42948 -13.99898 -13.91653 -13.73173 -13.35864 -13.02639 -12.68934 -12.61530 -12.55117 -12.49527 -12.30942 -12.13717 -11.93248 -11.87771 -11.44800 -11.31876 -11.18461 -11.17952 -10.91138 -10.68771 -10.49502 -10.15021 -9.77910 -9.69519 -9.42055 -8.87453 -8.83606 -8.40401 -8.22018 -6.79045 -6.47440 -4.18538 1.42999 1.92790 2.87600 3.20463 3.35285 3.36192 3.42403 3.47646 3.99968 4.15393 4.35573 4.39634 4.40971 4.51214 4.65192 4.78890 4.95616 5.01709 5.16218 5.21790 5.27507 5.32562 5.43397 5.52283 5.53305 5.54587 5.59014 5.60439 5.69316 5.74294 5.86399 5.91666 6.02217 6.05618 6.07303 6.27598 6.51185 6.65124 6.76981 6.96774 7.06856 7.37534 7.46559 7.75807 7.81941 8.34719 8.67203 8.96428 10.59769 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.003611 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.818762 B = 7751.288738 C = 9340.896828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.159 4.159 4 C 0.125 3.875 5 C -0.142 4.142 6 O -0.553 6.553 7 C 0.097 3.903 8 N -0.730 5.730 9 C 0.553 3.447 10 O -0.515 6.515 11 C -0.172 4.172 12 C -0.064 4.064 13 C -0.177 4.177 14 C -0.076 4.076 15 C -0.145 4.145 16 C -0.029 4.029 17 S 0.084 5.916 18 C -0.579 4.579 19 H 0.106 0.894 20 C 0.103 3.897 21 N -0.864 5.864 22 Si 0.848 3.152 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.233 1.233 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.376 0.624 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.146 0.854 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.748 1.765 -4.430 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.216 4.216 4 C 0.084 3.916 5 C -0.199 4.199 6 O -0.360 6.360 7 C -0.027 4.027 8 N -0.385 5.385 9 C 0.342 3.658 10 O -0.393 6.393 11 C -0.187 4.187 12 C -0.085 4.085 13 C -0.201 4.201 14 C -0.098 4.098 15 C -0.170 4.170 16 C -0.148 4.148 17 S 0.345 5.655 18 C -0.725 4.725 19 H 0.123 0.877 20 C -0.108 4.108 21 N -0.497 5.497 22 Si 0.672 3.328 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.157 1.157 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.224 0.776 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.235 0.765 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.164 0.836 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.077 2.322 -6.115 23.026 hybrid contribution 0.480 -0.039 0.807 0.940 sum -21.597 2.284 -5.308 22.356 Atomic orbital electron populations 1.21799 0.94261 1.02091 1.01907 1.21700 0.97032 0.96855 0.98188 1.21967 1.01759 0.95641 1.02250 1.21450 0.91201 0.93451 0.85493 1.21811 1.02087 0.93185 1.02844 1.86528 1.76801 1.29198 1.43497 1.21984 0.93333 0.96790 0.90632 1.45786 1.07061 1.54828 1.30870 1.18299 0.81735 0.80711 0.85036 1.90755 1.54219 1.47924 1.46382 1.19169 0.92551 1.07208 0.99742 1.20908 0.97494 0.95873 0.94177 1.20726 0.95466 1.04101 0.99778 1.21144 0.93148 0.97523 0.98005 1.21574 1.01451 0.98816 0.95135 1.22502 0.95943 0.97501 0.98877 1.84076 0.96308 1.59393 1.25700 1.23540 0.92261 1.47973 1.08695 0.87661 1.24800 0.94433 0.93678 0.97851 1.69908 0.97826 1.43641 1.38359 0.86900 0.80362 0.81187 0.84360 1.18807 1.19377 1.15656 0.91977 0.92858 0.92362 0.90116 0.92427 0.91786 0.92084 0.91773 0.91256 0.90871 0.77555 0.91177 0.90900 0.76462 0.86964 0.86761 0.86599 0.83624 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.69 37.16 0.32 -0.63 16 2 C -0.12 -0.86 2.34 -90.62 -0.21 -1.07 16 3 C -0.16 -1.10 8.53 37.16 0.32 -0.78 16 4 C 0.13 1.07 0.50 -90.62 -0.05 1.03 16 5 C -0.14 -1.16 8.26 37.16 0.31 -0.85 16 6 O -0.55 -4.96 12.21 -35.23 -0.43 -5.39 16 7 C 0.10 1.11 4.31 -4.04 -0.02 1.10 16 8 N -0.73 -9.93 5.14 -61.38 -0.32 -10.25 16 9 C 0.55 10.27 7.75 -12.52 -0.10 10.17 16 10 O -0.52 -11.41 13.77 5.26 0.07 -11.34 16 11 C -0.17 -3.32 5.89 -104.76 -0.62 -3.93 16 12 C -0.06 -1.00 9.53 -39.21 -0.37 -1.37 16 13 C -0.18 -2.67 10.02 -39.58 -0.40 -3.06 16 14 C -0.08 -1.30 10.03 -39.54 -0.40 -1.69 16 15 C -0.15 -3.05 9.22 -39.38 -0.36 -3.41 16 16 C -0.03 -0.66 6.14 -38.39 -0.24 -0.89 16 17 S 0.08 2.16 16.53 -107.50 -1.78 0.38 16 18 C -0.58 -16.34 9.54 30.94 0.30 -16.05 16 19 H 0.11 3.06 5.21 -52.49 -0.27 2.79 16 20 C 0.10 2.94 5.50 -17.46 -0.10 2.84 16 21 N -0.86 -25.30 13.96 55.49 0.77 -24.52 16 22 Si 0.85 20.96 27.74 -169.99 -4.71 16.25 16 23 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.23 -5.73 6.74 56.52 0.38 -5.35 16 26 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.35 6.78 -51.93 -0.35 0.00 16 31 H 0.06 0.50 6.55 -51.93 -0.34 0.16 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 34 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.38 2.62 7.33 45.56 0.33 2.96 16 37 H 0.07 0.84 6.71 -51.93 -0.35 0.50 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.40 4.65 5.02 -40.82 -0.20 4.44 16 40 H 0.11 1.34 6.40 -52.48 -0.34 1.00 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.15 3.33 5.04 -52.49 -0.26 3.07 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -32.26 357.86 -7.91 -40.17 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.31 Total: 7.91 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.61 Total: -18.61 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.46 Total: -34.77 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.36 Total: -16.73 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.25 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.78 Total: 0.38 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.26 -7.91 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075253663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.424 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds