Wall clock time and date at job start Tue Mar 31 2020 14:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47126 * 2 1 4 4 C 1.52997 * 109.47264 * 120.00129 * 2 1 3 5 5 C 1.53010 * 109.47109 * 59.99821 * 4 2 1 6 6 O 1.42897 * 109.47162 * 299.99833 * 4 2 1 7 7 C 1.52992 * 109.47258 * 179.97438 * 4 2 1 8 8 N 1.46505 * 109.47514 * 185.00017 * 7 4 2 9 9 C 1.34772 * 120.00364 * 180.02562 * 8 7 4 10 10 O 1.21614 * 119.99904 * 0.02562 * 9 8 7 11 11 C 1.47424 * 120.00084 * 180.02562 * 9 8 7 12 12 C 1.39673 * 120.21861 * 0.24995 * 11 9 8 13 13 C 1.37801 * 119.94403 * 180.27257 * 12 11 9 14 14 C 1.38666 * 120.37946 * 359.73245 * 13 12 11 15 15 C 1.37910 * 120.43573 * 0.02562 * 14 13 12 16 16 C 1.39115 * 120.05151 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18617 * 180.02562 * 16 15 14 18 18 C 1.76194 * 100.00243 * 353.16114 * 17 16 15 19 19 H 1.07995 * 120.00099 * 354.34284 * 18 17 16 20 20 C 1.38808 * 119.99872 * 174.34821 * 18 17 16 21 21 N 1.31557 * 120.00032 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00267 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47088 * 89.99914 * 22 20 18 24 24 H 1.48499 * 109.47298 * 210.00147 * 22 20 18 25 25 H 1.48497 * 109.47183 * 330.00404 * 22 20 18 26 26 H 1.08999 * 109.46492 * 299.99927 * 1 2 3 27 27 H 1.08993 * 109.46891 * 59.99494 * 1 2 3 28 28 H 1.08998 * 109.46805 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46492 * 240.00073 * 2 1 3 30 30 H 1.08999 * 109.47376 * 60.00614 * 3 2 1 31 31 H 1.09004 * 109.47291 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47125 * 300.00039 * 3 2 1 33 33 H 1.08998 * 109.46807 * 179.97438 * 5 4 2 34 34 H 1.08997 * 109.46713 * 299.99798 * 5 4 2 35 35 H 1.08995 * 109.46636 * 59.99736 * 5 4 2 36 36 H 0.96694 * 114.00254 * 300.00138 * 6 4 2 37 37 H 1.08998 * 109.47028 * 64.99982 * 7 4 2 38 38 H 1.09003 * 109.47775 * 305.00220 * 7 4 2 39 39 H 0.97001 * 119.99234 * 0.02562 * 8 7 4 40 40 H 1.08008 * 120.02716 * 0.02562 * 12 11 9 41 41 H 1.07999 * 119.81624 * 179.74244 * 13 12 11 42 42 H 1.07997 * 119.78096 * 180.02562 * 14 13 12 43 43 H 1.08002 * 119.97140 * 180.02562 * 15 14 13 44 44 H 0.96994 * 120.00489 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 8 1.5638 -0.0476 2.4160 7 6 3.5700 -0.7218 1.2489 8 7 4.0584 -1.5141 2.3803 9 6 5.3834 -1.6554 2.5821 10 8 6.1737 -1.1248 1.8252 11 6 5.8748 -2.4531 3.7203 12 6 4.9712 -3.0688 4.5894 13 6 5.4367 -3.8085 5.6548 14 6 6.7996 -3.9509 5.8675 15 6 7.7056 -3.3539 5.0163 16 6 7.2555 -2.6031 3.9350 17 16 8.4100 -1.8394 2.8449 18 6 9.9113 -2.1784 3.7026 19 1 9.8834 -2.6444 4.6765 20 6 11.1298 -1.8466 3.1266 21 7 12.2508 -2.0993 3.7672 22 14 11.1781 -1.0412 1.4419 23 1 11.1316 0.4350 1.5974 24 1 12.4316 -1.4263 0.7449 25 1 10.0096 -1.4919 0.6441 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.8938 -2.6778 2.1389 34 1 0.4401 -2.1638 1.2493 35 1 1.8933 -2.6776 0.3592 36 1 1.8491 0.8739 2.4821 37 1 3.9337 0.3018 1.3382 38 1 3.9331 -1.1563 0.3175 39 1 3.4280 -1.9370 2.9842 40 1 3.9085 -2.9619 4.4288 41 1 4.7362 -4.2802 6.3279 42 1 7.1537 -4.5331 6.7053 43 1 8.7654 -3.4700 5.1888 44 1 13.1023 -1.8671 3.3650 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075253663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:03 Heat of formation + Delta-G solvation = -92.504890 kcal Electronic energy + Delta-G solvation = -25105.211730 eV Core-core repulsion = 21533.432943 eV Total energy + Delta-G solvation = -3571.778787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27800 -40.05258 -38.88114 -35.49907 -34.82395 -34.79020 -32.44014 -31.86455 -31.05397 -28.94003 -27.99449 -26.79242 -24.80945 -23.57747 -23.11289 -21.64737 -20.74844 -20.05758 -18.89421 -17.76680 -17.56183 -17.17119 -16.78853 -16.53812 -16.21915 -15.68314 -15.66147 -15.31821 -15.26807 -15.05398 -14.83193 -14.26176 -13.80011 -13.73730 -13.66424 -13.30113 -13.24486 -13.12433 -13.05862 -13.05155 -12.89121 -12.72150 -12.50643 -12.26534 -12.09614 -11.72623 -11.57911 -11.48961 -11.33193 -11.29788 -10.77829 -10.59775 -10.16671 -10.06050 -9.81143 -8.67803 -8.59679 -6.31133 -0.04418 0.45662 1.00203 1.22817 1.39207 1.61847 1.96450 2.13963 2.17806 2.66282 2.77674 2.96846 3.31979 3.60682 3.75680 3.83985 3.89959 3.95914 4.15747 4.22591 4.38526 4.54400 4.57173 4.59519 4.65435 4.74687 4.79604 4.84849 4.90540 4.95206 5.01658 5.04910 5.05692 5.18133 5.29211 5.34206 5.42888 5.47821 5.48897 5.52428 5.60303 5.66071 6.03755 6.15824 6.57359 6.76983 6.83636 7.29713 8.51294 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.003611 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.818762 B = 7751.288738 C = 9340.896828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C -0.160 4.160 4 C 0.136 3.864 5 C -0.146 4.146 6 O -0.559 6.559 7 C 0.094 3.906 8 N -0.705 5.705 9 C 0.548 3.452 10 O -0.557 6.557 11 C -0.175 4.175 12 C -0.055 4.055 13 C -0.147 4.147 14 C -0.071 4.071 15 C -0.170 4.170 16 C -0.053 4.053 17 S 0.023 5.977 18 C -0.585 4.585 19 H 0.080 0.920 20 C 0.054 3.946 21 N -0.908 5.908 22 Si 0.904 3.096 23 H -0.261 1.261 24 H -0.251 1.251 25 H -0.236 1.236 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.384 0.616 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.412 0.588 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.113 0.887 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.381 1.093 -3.928 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.135 4.135 3 C -0.217 4.217 4 C 0.095 3.905 5 C -0.203 4.203 6 O -0.367 6.367 7 C -0.030 4.030 8 N -0.360 5.360 9 C 0.336 3.664 10 O -0.437 6.437 11 C -0.187 4.187 12 C -0.074 4.074 13 C -0.169 4.169 14 C -0.092 4.092 15 C -0.195 4.195 16 C -0.171 4.171 17 S 0.279 5.721 18 C -0.732 4.732 19 H 0.097 0.903 20 C -0.153 4.153 21 N -0.544 5.544 22 Si 0.726 3.274 23 H -0.185 1.185 24 H -0.175 1.175 25 H -0.160 1.160 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.234 0.766 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.251 0.749 40 H 0.178 0.822 41 H 0.186 0.814 42 H 0.165 0.835 43 H 0.131 0.869 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.818 1.618 -5.562 27.437 hybrid contribution 1.510 0.055 0.859 1.738 sum -25.308 1.673 -4.703 25.796 Atomic orbital electron populations 1.21767 0.93338 1.02428 1.02127 1.21679 0.97643 0.96744 0.97424 1.21971 1.00869 0.95762 1.03069 1.21360 0.88702 0.94244 0.86170 1.21872 1.02870 0.92524 1.03013 1.86510 1.76681 1.29988 1.43538 1.22183 0.95629 0.95888 0.89331 1.45601 1.05410 1.53791 1.31158 1.18396 0.83030 0.80390 0.84556 1.90739 1.55654 1.49583 1.47746 1.19541 0.91741 1.06919 1.00527 1.21446 0.99208 0.94003 0.92786 1.21380 0.95118 1.01325 0.99121 1.21543 0.93726 0.96316 0.97579 1.21470 1.00915 1.00629 0.96481 1.22504 0.96539 0.99018 0.98993 1.83968 0.96408 1.63662 1.28072 1.23659 0.93928 1.47435 1.08138 0.90256 1.25579 0.94114 0.94374 1.01209 1.69984 0.98427 1.45868 1.40143 0.86057 0.80666 0.80221 0.80496 1.18530 1.17510 1.16032 0.92255 0.92155 0.91964 0.90087 0.91516 0.93155 0.91453 0.91870 0.90145 0.90475 0.76586 0.91815 0.91678 0.74901 0.82156 0.81361 0.83457 0.86914 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.69 71.98 0.63 -0.83 16 2 C -0.12 -1.41 2.34 -10.79 -0.03 -1.44 16 3 C -0.16 -1.93 8.53 71.98 0.61 -1.32 16 4 C 0.14 1.98 0.50 -10.79 -0.01 1.98 16 5 C -0.15 -1.89 8.26 71.99 0.59 -1.29 16 6 O -0.56 -8.23 12.21 -148.98 -1.82 -10.05 16 7 C 0.09 2.00 4.31 86.38 0.37 2.38 16 8 N -0.71 -17.48 5.14 -466.37 -2.40 -19.87 16 9 C 0.55 19.85 7.75 86.66 0.67 20.52 16 10 O -0.56 -25.20 13.77 -4.08 -0.06 -25.26 16 11 C -0.17 -6.44 5.89 -19.95 -0.12 -6.56 16 12 C -0.05 -1.42 9.53 22.51 0.21 -1.21 16 13 C -0.15 -3.57 10.02 22.27 0.22 -3.35 16 14 C -0.07 -2.20 10.03 22.29 0.22 -1.97 16 15 C -0.17 -7.30 9.22 22.40 0.21 -7.09 16 16 C -0.05 -2.45 6.14 23.04 0.14 -2.31 16 17 S 0.02 1.26 16.53 -56.49 -0.93 0.33 16 18 C -0.59 -35.43 9.54 67.96 0.65 -34.78 16 19 H 0.08 5.05 5.21 -2.91 -0.02 5.03 16 20 C 0.05 3.22 5.50 84.87 0.47 3.69 16 21 N -0.91 -56.07 13.96 21.65 0.30 -55.77 16 22 Si 0.90 45.48 27.74 68.60 1.90 47.39 16 23 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.25 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 26 H 0.06 0.67 7.68 -2.39 -0.02 0.65 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.61 6.43 -2.39 -0.02 0.59 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.67 6.78 -2.39 -0.02 0.66 16 31 H 0.05 0.75 6.55 -2.38 -0.02 0.73 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.82 6.57 -2.39 -0.02 0.80 16 34 H 0.08 0.89 6.43 -2.39 -0.02 0.88 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.38 4.30 7.33 -74.06 -0.54 3.76 16 37 H 0.06 1.49 6.71 -2.39 -0.02 1.47 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.41 7.87 5.02 -92.71 -0.47 7.41 16 40 H 0.16 2.68 6.40 -2.91 -0.02 2.66 16 41 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.11 5.58 5.04 -2.91 -0.01 5.56 16 44 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -76.94 357.86 1.85 -75.09 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.00 Total: 21.73 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 4.86 Total: -33.58 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -2.09 Total: -75.64 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -1.88 Total: -35.30 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -0.93 Total: 0.33 kcal Total: -76.94 1.85 -75.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075253663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.415 kcal (2) G-P(sol) polarization free energy of solvation -76.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds