Wall clock time and date at job start Tue Mar 31 2020 14:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 C 1.53003 * 109.47187 * 119.99918 * 2 1 3 5 5 C 1.52999 * 109.47187 * 180.02562 * 4 2 1 6 6 O 1.42899 * 109.46932 * 300.00208 * 4 2 1 7 7 C 1.52997 * 109.46957 * 59.99901 * 4 2 1 8 8 N 1.46497 * 109.47467 * 179.97438 * 7 4 2 9 9 C 1.34769 * 120.00489 * 179.97438 * 8 7 4 10 10 O 1.21609 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.47428 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.39674 * 120.21524 * 359.96351 * 11 9 8 13 13 C 1.37807 * 119.94090 * 179.97438 * 12 11 9 14 14 C 1.38658 * 120.38211 * 0.02762 * 13 12 11 15 15 C 1.37909 * 120.43495 * 0.02562 * 14 13 12 16 16 C 1.39115 * 120.05286 * 359.96160 * 15 14 13 17 17 S 1.76200 * 120.18984 * 180.02562 * 16 15 14 18 18 C 1.76204 * 99.99758 * 6.84001 * 17 16 15 19 19 H 1.08002 * 120.00676 * 5.64968 * 18 17 16 20 20 C 1.38808 * 119.99589 * 185.65561 * 18 17 16 21 21 N 1.31555 * 120.00428 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99707 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46979 * 90.00348 * 22 20 18 24 24 H 1.48506 * 109.46848 * 210.00007 * 22 20 18 25 25 H 1.48497 * 109.47349 * 329.99609 * 22 20 18 26 26 H 1.08995 * 109.47032 * 300.00587 * 1 2 3 27 27 H 1.09000 * 109.46485 * 60.00075 * 1 2 3 28 28 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47573 * 239.99800 * 2 1 3 30 30 H 1.09002 * 109.47404 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47358 * 299.99963 * 3 2 1 32 32 H 1.09000 * 109.47059 * 60.00227 * 3 2 1 33 33 H 1.09002 * 109.47573 * 299.99882 * 5 4 2 34 34 H 1.08998 * 109.47236 * 60.00147 * 5 4 2 35 35 H 1.09002 * 109.46908 * 180.02562 * 5 4 2 36 36 H 0.96701 * 114.00154 * 59.99521 * 6 4 2 37 37 H 1.09008 * 109.46994 * 60.00177 * 7 4 2 38 38 H 1.09002 * 109.47404 * 300.00368 * 7 4 2 39 39 H 0.97006 * 119.99907 * 0.02562 * 8 7 4 40 40 H 1.08005 * 120.02970 * 0.04053 * 12 11 9 41 41 H 1.08004 * 119.80645 * 180.29578 * 13 12 11 42 42 H 1.07994 * 119.77880 * 179.97438 * 14 13 12 43 43 H 1.07999 * 119.96976 * 179.97438 * 15 14 13 44 44 H 0.96998 * 120.00247 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 8 1.5636 -0.0476 2.4160 7 6 1.5300 -2.1637 1.2493 8 7 2.0188 -2.8546 2.4451 9 6 1.6928 -4.1447 2.6586 10 8 0.9933 -4.7356 1.8583 11 6 2.1852 -4.8401 3.8617 12 6 2.9904 -4.1663 4.7829 13 6 3.4471 -4.8217 5.9059 14 6 3.1125 -6.1488 6.1281 15 6 2.3194 -6.8294 5.2282 16 6 1.8482 -6.1854 4.0887 17 16 0.8340 -7.0512 2.9370 18 6 0.5876 -8.5571 3.8182 19 1 0.9579 -8.6590 4.8276 20 6 -0.0824 -9.6125 3.2148 21 7 -0.5329 -9.4887 1.9850 22 14 -0.3430 -11.2092 4.1487 23 1 -1.6272 -11.1442 4.8915 24 1 -0.3826 -12.3426 3.1899 25 1 0.7735 -11.4103 5.1068 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9338 -1.2343 0.3596 34 1 3.9330 0.3071 1.2498 35 1 3.9333 -1.2349 2.1394 36 1 0.5996 -0.0094 2.4821 37 1 1.8934 -2.6776 0.3592 38 1 0.4400 -2.1637 1.2492 39 1 2.5765 -2.3832 3.0837 40 1 3.2540 -3.1324 4.6158 41 1 4.0657 -4.2972 6.6192 42 1 3.4761 -6.6530 7.0111 43 1 2.0637 -7.8631 5.4085 44 1 -1.0007 -10.2264 1.5633 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075253665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:07 Heat of formation + Delta-G solvation = -71.626727 kcal Electronic energy + Delta-G solvation = -25029.561427 eV Core-core repulsion = 21458.687986 eV Total energy + Delta-G solvation = -3570.873442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01027 -38.88109 -37.31779 -34.14128 -34.08505 -32.74236 -31.06141 -30.25139 -30.11048 -28.10151 -25.89261 -25.81265 -23.48818 -22.28780 -21.78823 -20.27594 -19.76754 -18.30520 -17.32542 -16.83906 -15.95609 -15.66390 -15.36343 -15.20294 -14.85657 -14.73055 -14.27253 -13.94619 -13.82335 -13.67270 -13.20946 -12.96262 -12.68364 -12.57234 -12.51021 -12.43907 -12.25120 -12.07063 -11.81593 -11.56919 -11.38485 -11.20438 -11.18914 -11.11522 -10.92606 -10.60656 -10.32298 -10.06184 -9.79035 -9.61040 -9.47905 -8.74904 -8.70357 -8.30629 -8.04874 -6.51871 -6.45126 -4.15474 1.55725 2.04135 3.11175 3.13444 3.20031 3.41622 3.49142 3.54613 4.06175 4.10338 4.43418 4.47741 4.51533 4.58432 4.85311 4.95799 5.09554 5.14948 5.23349 5.33251 5.38356 5.42153 5.50838 5.58598 5.61653 5.62842 5.66748 5.67938 5.78042 5.81217 5.94630 6.00683 6.08207 6.13014 6.14280 6.40950 6.61769 6.77703 6.88057 7.05135 7.15306 7.43997 7.46039 7.61043 7.95432 8.17294 8.82305 9.01132 10.58158 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017966 B = 0.003218 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.092091 B = 8698.432521 C = 9981.047236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.125 3.875 5 C -0.142 4.142 6 O -0.554 6.554 7 C 0.096 3.904 8 N -0.731 5.731 9 C 0.551 3.449 10 O -0.512 6.512 11 C -0.177 4.177 12 C -0.060 4.060 13 C -0.187 4.187 14 C -0.077 4.077 15 C -0.154 4.154 16 C -0.056 4.056 17 S 0.183 5.817 18 C -0.595 4.595 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.859 5.859 22 Si 0.919 3.081 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.376 0.624 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 18.593 -0.565 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.138 4.138 3 C -0.200 4.200 4 C 0.084 3.916 5 C -0.199 4.199 6 O -0.361 6.361 7 C -0.028 4.028 8 N -0.387 5.387 9 C 0.340 3.660 10 O -0.389 6.389 11 C -0.192 4.192 12 C -0.081 4.081 13 C -0.211 4.211 14 C -0.099 4.099 15 C -0.179 4.179 16 C -0.176 4.176 17 S 0.447 5.553 18 C -0.742 4.742 19 H 0.108 0.892 20 C -0.128 4.128 21 N -0.491 5.491 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.192 1.192 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.224 0.776 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.469 18.182 -2.552 19.158 hybrid contribution 0.023 -1.199 2.018 2.347 sum 5.492 16.983 -0.534 17.857 Atomic orbital electron populations 1.21974 0.94844 1.02628 1.02192 1.21695 0.96465 0.97368 0.98258 1.21797 1.01162 0.95212 1.01860 1.21455 0.95174 0.89510 0.85437 1.21808 0.92320 1.02868 1.02893 1.86519 1.26967 1.79039 1.43551 1.21978 0.99715 0.91789 0.89332 1.45742 1.55418 1.12180 1.25321 1.18328 0.80480 0.81056 0.86130 1.90780 1.37073 1.65034 1.46034 1.19112 1.08068 0.94058 0.97964 1.20909 0.95508 0.97887 0.93746 1.20639 1.05765 0.95552 0.99165 1.21084 0.96435 0.94400 0.97978 1.21436 1.00397 1.01256 0.94810 1.23085 0.98850 0.95793 0.99879 1.84750 1.46637 1.07020 1.16888 1.24061 1.43355 1.02515 1.04278 0.89167 1.25095 0.93826 0.99015 0.94815 1.69975 1.33907 1.33040 1.12198 0.86154 0.79126 0.80826 0.79474 1.19878 1.20486 1.19242 0.92466 0.92113 0.91680 0.90104 0.92390 0.92885 0.92015 0.90919 0.91364 0.91744 0.77560 0.90930 0.91162 0.76568 0.87168 0.87074 0.87027 0.84383 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.53 37.16 0.32 -0.88 16 2 C -0.12 -0.93 2.34 -90.62 -0.21 -1.14 16 3 C -0.14 -1.02 8.69 37.16 0.32 -0.70 16 4 C 0.13 1.16 0.48 -90.62 -0.04 1.11 16 5 C -0.14 -1.25 8.32 37.16 0.31 -0.94 16 6 O -0.55 -5.27 12.01 -35.23 -0.42 -5.69 16 7 C 0.10 1.19 4.43 -4.04 -0.02 1.17 16 8 N -0.73 -10.57 5.10 -61.38 -0.31 -10.88 16 9 C 0.55 10.77 7.75 -12.52 -0.10 10.68 16 10 O -0.51 -12.00 13.77 5.27 0.07 -11.93 16 11 C -0.18 -3.55 5.89 -104.75 -0.62 -4.17 16 12 C -0.06 -0.98 9.53 -39.20 -0.37 -1.36 16 13 C -0.19 -2.93 10.02 -39.58 -0.40 -3.33 16 14 C -0.08 -1.33 10.03 -39.55 -0.40 -1.73 16 15 C -0.15 -3.25 9.22 -39.38 -0.36 -3.62 16 16 C -0.06 -1.30 6.14 -38.39 -0.24 -1.53 16 17 S 0.18 4.94 18.56 -107.50 -2.00 2.94 16 18 C -0.60 -16.51 9.00 30.94 0.28 -16.24 16 19 H 0.09 2.37 4.98 -52.49 -0.26 2.11 16 20 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 21 N -0.86 -24.83 13.22 55.49 0.73 -24.09 16 22 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H 0.06 0.38 6.78 -51.93 -0.35 0.03 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 35 H 0.06 0.60 6.86 -51.93 -0.36 0.24 16 36 H 0.38 2.85 7.33 45.56 0.33 3.19 16 37 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 38 H 0.07 0.91 6.43 -51.93 -0.33 0.57 16 39 H 0.40 4.97 5.22 -40.82 -0.21 4.76 16 40 H 0.11 1.41 6.40 -52.48 -0.34 1.07 16 41 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.14 3.04 5.03 -52.49 -0.26 2.77 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -32.17 360.55 -8.41 -40.59 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.28 Total: 8.36 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.62 Total: -20.47 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.42 Total: -34.97 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.35 Total: -17.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.17 -8.41 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075253665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.037 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds