Wall clock time and date at job start Tue Mar 31 2020 14:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99893 * 2 1 4 4 C 1.52997 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47282 * 174.99945 * 4 3 2 6 6 N 1.46493 * 109.47096 * 295.00066 * 4 3 2 7 7 C 1.34783 * 120.00266 * 204.99727 * 6 4 3 8 8 O 1.21554 * 119.99505 * 0.02562 * 7 6 4 9 9 C 1.47857 * 120.00551 * 180.02562 * 7 6 4 10 10 C 1.39674 * 120.09834 * 0.02598 * 9 7 6 11 11 C 1.38046 * 120.04015 * 179.97438 * 10 9 7 12 12 C 1.38176 * 120.23908 * 359.76355 * 11 10 9 13 13 C 1.39179 * 120.20513 * 0.51284 * 12 11 10 14 14 S 1.76194 * 120.02163 * 179.73865 * 13 12 11 15 15 C 1.76196 * 100.00182 * 265.25136 * 14 13 12 16 16 H 1.08000 * 120.00393 * 5.12593 * 15 14 13 17 17 C 1.38736 * 120.00006 * 185.12109 * 15 14 13 18 18 N 1.31616 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47076 * 59.99906 * 19 17 15 21 21 H 1.48496 * 109.46794 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46962 * 299.99839 * 19 17 15 23 23 C 1.38875 * 119.95687 * 359.47003 * 13 12 11 24 24 C 1.52998 * 109.47156 * 55.00017 * 4 3 2 25 25 C 1.53001 * 109.47085 * 59.99882 * 24 4 3 26 26 C 1.53001 * 109.47465 * 180.02562 * 24 4 3 27 27 H 1.08995 * 109.46562 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47459 * 300.00135 * 1 2 3 29 29 H 1.08998 * 109.46997 * 60.00370 * 1 2 3 30 30 H 1.09006 * 109.46931 * 60.00042 * 3 2 1 31 31 H 1.09001 * 109.46939 * 300.00004 * 3 2 1 32 32 H 0.97000 * 120.00523 * 25.00430 * 6 4 3 33 33 H 1.08002 * 119.98410 * 359.97438 * 10 9 7 34 34 H 1.07996 * 119.87866 * 180.02562 * 11 10 9 35 35 H 1.08006 * 119.89861 * 180.27092 * 12 11 10 36 36 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.12505 * 180.25503 * 23 13 12 38 38 H 1.08996 * 109.47315 * 300.00346 * 24 4 3 39 39 H 1.09002 * 109.47024 * 60.00274 * 25 24 4 40 40 H 1.09002 * 109.47491 * 179.97438 * 25 24 4 41 41 H 1.09004 * 109.47419 * 299.99992 * 25 24 4 42 42 H 1.08991 * 109.47123 * 59.99869 * 26 24 4 43 43 H 1.09002 * 109.47298 * 180.02562 * 26 24 4 44 44 H 1.09004 * 109.46253 * 300.00010 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9785 2.1767 -0.0889 6 7 3.9756 0.5646 1.2527 7 6 5.2195 0.7948 1.7179 8 8 5.9759 1.5173 1.0987 9 6 5.6641 0.1684 2.9813 10 6 4.7969 -0.6627 3.6942 11 6 5.2134 -1.2474 4.8733 12 6 6.4894 -1.0178 5.3511 13 6 7.3599 -0.1869 4.6519 14 16 8.9837 0.1080 5.2691 15 6 8.7074 1.6065 6.1537 16 1 7.7071 2.0034 6.2447 17 6 9.7749 2.2767 6.7335 18 7 10.9939 1.7928 6.6231 19 14 9.4818 3.8651 7.6719 20 1 8.5610 3.6062 8.8078 21 1 10.7749 4.3799 8.1896 22 1 8.8765 4.8721 6.7637 23 6 6.9498 0.4053 3.4645 24 6 3.9790 0.3196 -1.1806 25 6 3.5192 0.9673 -2.4883 26 6 5.5042 0.1983 -1.1797 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.3720 -0.0118 1.7469 33 1 3.7998 -0.8481 3.3227 34 1 4.5408 -1.8898 5.4222 35 1 6.8110 -1.4815 6.2720 36 1 11.7403 2.2616 7.0282 37 1 7.6245 1.0473 2.9177 38 1 3.5360 -0.6723 -1.0911 39 1 3.9623 1.9592 -2.5779 40 1 3.8356 0.3511 -3.3299 41 1 2.4326 1.0533 -2.4888 42 1 5.8314 -0.2634 -0.2481 43 1 5.8203 -0.4178 -2.0215 44 1 5.9475 1.1901 -1.2690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079529750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:48 Heat of formation + Delta-G solvation = -69.894974 kcal Electronic energy + Delta-G solvation = -24806.184098 eV Core-core repulsion = 21235.385751 eV Total energy + Delta-G solvation = -3570.798347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34781 -38.69595 -37.70777 -36.02946 -33.51125 -32.49181 -30.91656 -30.50649 -29.37893 -27.04533 -26.54211 -25.55202 -24.03688 -22.95206 -22.12407 -20.41031 -20.11721 -18.26455 -17.34733 -16.95102 -16.50192 -15.92756 -15.76358 -15.38718 -15.13664 -15.03890 -14.83522 -14.29702 -13.91236 -13.77274 -13.38628 -13.24689 -12.97832 -12.66694 -12.57156 -12.32035 -12.25943 -12.03200 -11.78367 -11.60309 -11.28981 -11.14882 -11.08470 -11.05306 -10.80061 -10.75795 -10.68755 -10.06049 -9.94766 -9.68038 -9.13653 -9.02460 -8.97367 -8.54533 -8.00173 -6.69257 -6.26807 -4.00623 1.20915 1.70340 3.04996 3.15237 3.22365 3.24523 3.27581 3.40173 3.50439 4.11835 4.28966 4.43797 4.62944 4.87023 4.89476 4.93652 4.97311 5.02106 5.09358 5.11379 5.14617 5.21446 5.28311 5.28944 5.47407 5.49701 5.57762 5.76206 5.77497 5.84413 5.88346 5.91018 6.01979 6.05287 6.25060 6.29307 6.43115 6.54232 6.62857 6.67607 6.73208 6.96689 7.22963 7.58573 7.59128 8.34086 8.36876 9.18799 10.79886 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002844 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.969232 B = 9841.899187 C =10117.403930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.050 3.950 4 C 0.155 3.845 5 H 0.101 0.899 6 N -0.723 5.723 7 C 0.564 3.436 8 O -0.530 6.530 9 C -0.154 4.154 10 C -0.089 4.089 11 C -0.141 4.141 12 C -0.056 4.056 13 C -0.107 4.107 14 S -0.035 6.035 15 C -0.520 4.520 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.871 5.871 19 Si 0.920 3.080 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.019 4.019 24 C -0.102 4.102 25 C -0.144 4.144 26 C -0.141 4.141 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.402 0.598 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.270 0.730 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.073 -4.284 -13.248 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.027 4.027 4 C 0.050 3.950 5 H 0.118 0.882 6 N -0.376 5.376 7 C 0.353 3.647 8 O -0.407 6.407 9 C -0.159 4.159 10 C -0.109 4.109 11 C -0.161 4.161 12 C -0.077 4.077 13 C -0.218 4.218 14 S 0.199 5.801 15 C -0.667 4.667 16 H 0.093 0.907 17 C -0.135 4.135 18 N -0.506 5.506 19 Si 0.746 3.254 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.040 4.040 24 C -0.121 4.121 25 C -0.202 4.202 26 C -0.199 4.199 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.238 0.762 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.185 -4.483 -13.759 24.030 hybrid contribution -1.933 1.603 0.959 2.688 sum -21.117 -2.881 -12.799 24.861 Atomic orbital electron populations 1.22750 0.80964 1.02861 0.99994 1.87901 1.19665 1.27419 1.95409 1.22921 0.93145 0.85380 1.01234 1.21106 0.91277 0.98347 0.84289 0.88165 1.45878 1.15187 1.51764 1.24815 1.18347 0.81273 0.80485 0.84621 1.90775 1.53436 1.37610 1.58928 1.19883 0.96442 1.03096 0.96505 1.21159 0.98193 0.96324 0.95183 1.21053 0.96709 1.01609 0.96754 1.21951 0.92252 0.95159 0.98350 1.22839 1.03258 0.98992 0.96691 1.83596 0.99801 1.32538 1.64133 1.22793 0.96620 1.09231 1.38067 0.90700 1.24998 0.94365 0.98110 0.96076 1.69976 0.98837 1.39123 1.42647 0.86184 0.77695 0.81759 0.79725 1.19832 1.20741 1.19800 1.21940 0.93586 0.94730 0.93792 1.21436 0.97040 0.99954 0.93703 1.21844 1.00678 1.00846 0.96858 1.21897 0.94237 1.02423 1.01319 0.89537 0.94022 0.94100 0.92552 0.91514 0.76206 0.86506 0.85928 0.85137 0.92011 0.84339 0.90300 0.92627 0.92490 0.92784 0.92506 0.93634 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.20 9.56 -35.23 -0.34 -3.54 16 3 C 0.05 0.40 5.17 37.16 0.19 0.59 16 4 C 0.15 1.62 2.24 -67.94 -0.15 1.47 16 5 H 0.10 1.18 7.58 -51.93 -0.39 0.78 16 6 N -0.72 -8.67 4.90 -54.75 -0.27 -8.94 16 7 C 0.56 9.00 6.13 -12.32 -0.08 8.92 16 8 O -0.53 -10.02 13.46 5.32 0.07 -9.95 16 9 C -0.15 -2.63 5.87 -105.00 -0.62 -3.24 16 10 C -0.09 -1.26 9.54 -39.12 -0.37 -1.63 16 11 C -0.14 -2.07 10.02 -39.67 -0.40 -2.47 16 12 C -0.06 -1.02 9.79 -39.25 -0.38 -1.40 16 13 C -0.11 -2.31 5.45 -39.00 -0.21 -2.53 16 14 S -0.04 -0.92 21.40 -107.50 -2.30 -3.22 16 15 C -0.52 -14.77 9.46 30.92 0.29 -14.48 16 16 H 0.07 2.11 7.79 -52.49 -0.41 1.70 16 17 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 18 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 19 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 24 C -0.10 -1.06 2.49 -90.62 -0.23 -1.29 16 25 C -0.14 -1.21 8.84 37.16 0.33 -0.88 16 26 C -0.14 -1.81 7.72 37.16 0.29 -1.53 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.43 6.71 -51.93 -0.35 0.08 16 32 H 0.40 4.12 6.41 -40.82 -0.26 3.85 16 33 H 0.12 1.22 6.40 -52.49 -0.34 0.88 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 3.07 7.65 -52.49 -0.40 2.67 16 38 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.39 6.55 -51.93 -0.34 0.05 16 42 H 0.06 0.85 5.78 -51.93 -0.30 0.55 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -32.29 373.35 -8.70 -40.99 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.51 Total: 3.32 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.68 Total: -15.95 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.47 Total: -33.83 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.27 Total: -13.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.29 -8.70 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079529750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.908 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds