Wall clock time and date at job start Tue Mar 31 2020 14:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99893 * 2 1 4 4 C 1.52997 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47282 * 174.99945 * 4 3 2 6 6 N 1.46493 * 109.47096 * 295.00066 * 4 3 2 7 7 C 1.34783 * 120.00266 * 204.99727 * 6 4 3 8 8 O 1.21554 * 119.99505 * 0.02562 * 7 6 4 9 9 C 1.47857 * 120.00551 * 180.02562 * 7 6 4 10 10 C 1.39674 * 120.09834 * 0.02598 * 9 7 6 11 11 C 1.38046 * 120.04015 * 179.97438 * 10 9 7 12 12 C 1.38176 * 120.23908 * 359.76355 * 11 10 9 13 13 C 1.39179 * 120.20513 * 0.51284 * 12 11 10 14 14 S 1.76194 * 120.02163 * 179.73865 * 13 12 11 15 15 C 1.76196 * 100.00182 * 265.25136 * 14 13 12 16 16 H 1.08000 * 120.00393 * 5.12593 * 15 14 13 17 17 C 1.38736 * 120.00006 * 185.12109 * 15 14 13 18 18 N 1.31616 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47076 * 59.99906 * 19 17 15 21 21 H 1.48496 * 109.46794 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46962 * 299.99839 * 19 17 15 23 23 C 1.38875 * 119.95687 * 359.47003 * 13 12 11 24 24 C 1.52998 * 109.47156 * 55.00017 * 4 3 2 25 25 C 1.53001 * 109.47085 * 59.99882 * 24 4 3 26 26 C 1.53001 * 109.47465 * 180.02562 * 24 4 3 27 27 H 1.08995 * 109.46562 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47459 * 300.00135 * 1 2 3 29 29 H 1.08998 * 109.46997 * 60.00370 * 1 2 3 30 30 H 1.09006 * 109.46931 * 60.00042 * 3 2 1 31 31 H 1.09001 * 109.46939 * 300.00004 * 3 2 1 32 32 H 0.97000 * 120.00523 * 25.00430 * 6 4 3 33 33 H 1.08002 * 119.98410 * 359.97438 * 10 9 7 34 34 H 1.07996 * 119.87866 * 180.02562 * 11 10 9 35 35 H 1.08006 * 119.89861 * 180.27092 * 12 11 10 36 36 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.12505 * 180.25503 * 23 13 12 38 38 H 1.08996 * 109.47315 * 300.00346 * 24 4 3 39 39 H 1.09002 * 109.47024 * 60.00274 * 25 24 4 40 40 H 1.09002 * 109.47491 * 179.97438 * 25 24 4 41 41 H 1.09004 * 109.47419 * 299.99992 * 25 24 4 42 42 H 1.08991 * 109.47123 * 59.99869 * 26 24 4 43 43 H 1.09002 * 109.47298 * 180.02562 * 26 24 4 44 44 H 1.09004 * 109.46253 * 300.00010 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9785 2.1767 -0.0889 6 7 3.9756 0.5646 1.2527 7 6 5.2195 0.7948 1.7179 8 8 5.9759 1.5173 1.0987 9 6 5.6641 0.1684 2.9813 10 6 4.7969 -0.6627 3.6942 11 6 5.2134 -1.2474 4.8733 12 6 6.4894 -1.0178 5.3511 13 6 7.3599 -0.1869 4.6519 14 16 8.9837 0.1080 5.2691 15 6 8.7074 1.6065 6.1537 16 1 7.7071 2.0034 6.2447 17 6 9.7749 2.2767 6.7335 18 7 10.9939 1.7928 6.6231 19 14 9.4818 3.8651 7.6719 20 1 8.5610 3.6062 8.8078 21 1 10.7749 4.3799 8.1896 22 1 8.8765 4.8721 6.7637 23 6 6.9498 0.4053 3.4645 24 6 3.9790 0.3196 -1.1806 25 6 3.5192 0.9673 -2.4883 26 6 5.5042 0.1983 -1.1797 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.3720 -0.0118 1.7469 33 1 3.7998 -0.8481 3.3227 34 1 4.5408 -1.8898 5.4222 35 1 6.8110 -1.4815 6.2720 36 1 11.7403 2.2616 7.0282 37 1 7.6245 1.0473 2.9177 38 1 3.5360 -0.6723 -1.0911 39 1 3.9623 1.9592 -2.5779 40 1 3.8356 0.3511 -3.3299 41 1 2.4326 1.0533 -2.4888 42 1 5.8314 -0.2634 -0.2481 43 1 5.8203 -0.4178 -2.0215 44 1 5.9475 1.1901 -1.2690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079529750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:47 Heat of formation + Delta-G solvation = -90.596660 kcal Electronic energy + Delta-G solvation = -24807.081790 eV Core-core repulsion = 21235.385751 eV Total energy + Delta-G solvation = -3571.696040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50412 -39.70531 -38.77624 -36.91975 -34.65952 -34.60000 -32.19269 -31.89448 -30.21884 -27.86876 -27.74504 -27.07306 -25.12107 -24.02316 -23.44385 -21.68175 -21.01000 -19.98021 -18.94157 -17.84075 -17.20254 -17.05740 -16.93644 -16.64898 -16.53705 -16.25093 -16.06866 -15.59493 -15.30496 -14.82591 -14.64896 -14.56203 -14.14730 -13.74662 -13.65581 -13.26161 -13.17527 -13.11318 -13.01563 -12.96198 -12.87152 -12.62353 -12.39305 -12.31799 -12.12262 -11.76355 -11.69443 -11.58931 -11.23641 -11.03187 -10.73634 -10.56191 -10.13335 -9.87282 -9.69176 -8.81050 -8.39404 -6.19657 -0.16455 0.26127 1.28910 1.38480 1.44585 1.64472 1.83955 2.08720 2.25013 2.79422 2.86070 2.93512 3.41719 3.62907 3.74519 3.88405 3.95062 4.03064 4.10847 4.33186 4.35904 4.39673 4.48207 4.48832 4.59109 4.63421 4.66050 4.72091 4.79400 4.85425 4.92960 4.96265 4.99313 5.06392 5.20244 5.24685 5.31288 5.34456 5.37913 5.44226 5.51072 5.57383 5.86848 6.15141 6.21563 6.52109 7.00575 7.20032 8.67535 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002844 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.969232 B = 9841.899187 C =10117.403930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.058 3.942 4 C 0.149 3.851 5 H 0.085 0.915 6 N -0.702 5.702 7 C 0.563 3.437 8 O -0.569 6.569 9 C -0.157 4.157 10 C -0.065 4.065 11 C -0.121 4.121 12 C -0.064 4.064 13 C -0.128 4.128 14 S -0.096 6.096 15 C -0.536 4.536 16 H 0.067 0.933 17 C 0.019 3.981 18 N -0.907 5.907 19 Si 0.992 3.008 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.044 4.044 24 C -0.095 4.095 25 C -0.140 4.140 26 C -0.138 4.138 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.414 0.586 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.135 0.865 36 H 0.274 0.726 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.054 0.946 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.630 -4.746 -13.382 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.019 4.019 4 C 0.045 3.955 5 H 0.103 0.897 6 N -0.355 5.355 7 C 0.351 3.649 8 O -0.449 6.449 9 C -0.162 4.162 10 C -0.083 4.083 11 C -0.140 4.140 12 C -0.085 4.085 13 C -0.240 4.240 14 S 0.139 5.861 15 C -0.684 4.684 16 H 0.085 0.915 17 C -0.186 4.186 18 N -0.543 5.543 19 Si 0.813 3.187 20 H -0.185 1.185 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.066 4.066 24 C -0.114 4.114 25 C -0.198 4.198 26 C -0.195 4.195 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.252 0.748 33 H 0.186 0.814 34 H 0.192 0.808 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.790 -4.976 -13.902 28.000 hybrid contribution -0.666 1.630 0.885 1.971 sum -24.456 -3.346 -13.017 27.905 Atomic orbital electron populations 1.22912 0.79442 1.03779 1.00876 1.87867 1.21257 1.27304 1.95601 1.22820 0.90673 0.85760 1.02603 1.21255 0.93472 0.97405 0.83367 0.89698 1.45728 1.13642 1.50971 1.25123 1.18265 0.82228 0.80169 0.84208 1.90765 1.54834 1.39458 1.59889 1.20020 0.95356 1.03543 0.97258 1.21693 0.99407 0.93310 0.93941 1.21536 0.95298 1.00674 0.96506 1.22062 0.93450 0.94535 0.98454 1.22490 1.01342 1.02109 0.98021 1.83482 1.05523 1.32347 1.64779 1.23028 0.96535 1.10098 1.38699 0.91472 1.26017 0.93936 1.01739 0.96883 1.70103 0.99756 1.40754 1.43670 0.85100 0.78198 0.76941 0.78418 1.18457 1.19535 1.19531 1.21612 0.95190 0.95757 0.94050 1.21377 0.94856 1.00287 0.94897 1.21809 1.01803 1.00533 0.95606 1.21842 0.96401 1.01035 1.00262 0.88677 0.93293 0.93087 0.91741 0.89636 0.74756 0.81395 0.80817 0.84732 0.91679 0.87939 0.90064 0.92873 0.92024 0.90902 0.95104 0.92699 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -5.10 9.56 -148.98 -1.42 -6.52 16 3 C 0.06 0.73 5.17 71.98 0.37 1.10 16 4 C 0.15 2.86 2.24 44.99 0.10 2.96 16 5 H 0.09 1.95 7.58 -2.39 -0.02 1.93 16 6 N -0.70 -15.40 4.90 -445.40 -2.18 -17.58 16 7 C 0.56 17.91 6.13 86.79 0.53 18.44 16 8 O -0.57 -22.61 13.46 -3.89 -0.05 -22.66 16 9 C -0.16 -5.26 5.87 -20.11 -0.12 -5.38 16 10 C -0.06 -1.58 9.54 22.57 0.22 -1.37 16 11 C -0.12 -3.05 10.02 22.21 0.22 -2.83 16 12 C -0.06 -2.28 9.79 22.48 0.22 -2.06 16 13 C -0.13 -5.79 5.45 22.65 0.12 -5.67 16 14 S -0.10 -5.34 21.40 -56.49 -1.21 -6.55 16 15 C -0.54 -31.93 9.46 67.94 0.64 -31.28 16 16 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 17 C 0.02 1.13 5.49 84.84 0.47 1.60 16 18 N -0.91 -55.36 13.22 21.64 0.29 -55.08 16 19 Si 0.99 45.06 29.55 68.60 2.03 47.08 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 C -0.04 -1.92 9.34 22.70 0.21 -1.71 16 24 C -0.09 -1.82 2.49 -10.79 -0.03 -1.85 16 25 C -0.14 -2.04 8.84 71.98 0.64 -1.40 16 26 C -0.14 -3.59 7.72 71.98 0.56 -3.03 16 27 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 31 H 0.09 0.78 6.71 -2.39 -0.02 0.76 16 32 H 0.41 6.85 6.41 -92.71 -0.59 6.25 16 33 H 0.17 2.41 6.40 -2.91 -0.02 2.40 16 34 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 35 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.10 5.07 7.65 -2.91 -0.02 5.05 16 38 H 0.08 1.57 7.56 -2.39 -0.02 1.55 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.80 6.55 -2.38 -0.02 0.79 16 42 H 0.03 0.94 5.78 -2.39 -0.01 0.93 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.27 7.53 -2.39 -0.02 1.25 16 Total: -1.00 -76.92 373.35 3.26 -73.66 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.41 Total: 18.67 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 5.40 Total: -31.03 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.90 Total: -72.66 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.48 Total: -29.18 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.21 Total: -6.55 kcal Total: -76.92 3.26 -73.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079529750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.934 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds