Wall clock time and date at job start Tue Mar 31 2020 14:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 O 1.42892 * 109.47397 * 61.28781 * 3 2 1 5 5 C 1.52995 * 109.46983 * 181.29248 * 3 2 1 6 6 C 1.52999 * 109.47365 * 304.99745 * 5 3 2 7 7 C 1.53003 * 109.46813 * 301.28862 * 3 2 1 8 8 N 1.46497 * 109.47027 * 181.42815 * 7 3 2 9 9 C 1.34774 * 120.00231 * 184.71484 * 8 7 3 10 10 O 1.21555 * 119.99865 * 0.02562 * 9 8 7 11 11 C 1.47860 * 120.00382 * 179.97438 * 9 8 7 12 12 C 1.39668 * 120.10069 * 359.97438 * 11 9 8 13 13 C 1.38037 * 120.04252 * 180.02562 * 12 11 9 14 14 C 1.38186 * 120.24123 * 359.67182 * 13 12 11 15 15 C 1.39176 * 120.20010 * 0.60917 * 14 13 12 16 16 S 1.76203 * 120.02219 * 179.69534 * 15 14 13 17 17 C 1.76205 * 99.99701 * 264.83412 * 16 15 14 18 18 H 1.07999 * 120.00340 * 5.02724 * 17 16 15 19 19 C 1.38724 * 119.99669 * 185.02379 * 17 16 15 20 20 N 1.31624 * 119.99887 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00302 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46825 * 90.00105 * 21 19 17 23 23 H 1.48499 * 109.47489 * 209.99777 * 21 19 17 24 24 H 1.48501 * 109.47629 * 330.00346 * 21 19 17 25 25 C 1.38880 * 119.95994 * 359.41637 * 15 14 13 26 26 H 1.09006 * 109.46845 * 305.98388 * 1 2 3 27 27 H 1.08997 * 109.46728 * 65.98475 * 1 2 3 28 28 H 1.08996 * 109.47339 * 185.98921 * 1 2 3 29 29 H 1.08997 * 109.46777 * 239.99040 * 2 1 3 30 30 H 1.09007 * 109.46976 * 119.99912 * 2 1 3 31 31 H 0.96703 * 114.00477 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47420 * 64.99430 * 5 3 2 33 33 H 1.09000 * 109.47033 * 184.99692 * 5 3 2 34 34 H 1.08994 * 109.47793 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.47113 * 300.00215 * 6 5 3 36 36 H 1.09000 * 109.47089 * 59.99981 * 6 5 3 37 37 H 1.08999 * 109.47018 * 61.42611 * 7 3 2 38 38 H 1.09006 * 109.47317 * 301.42693 * 7 3 2 39 39 H 0.97000 * 119.99987 * 4.71025 * 8 7 3 40 40 H 1.08002 * 119.98343 * 0.02562 * 12 11 9 41 41 H 1.08003 * 119.88575 * 180.02562 * 13 12 11 42 42 H 1.07997 * 119.90158 * 180.29824 * 14 13 12 43 43 H 0.97005 * 120.00335 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.12385 * 180.25613 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5887 2.1073 1.1815 5 6 3.5697 1.4425 -0.0325 6 6 4.1046 0.6063 1.1317 7 6 1.5038 2.1730 -1.2327 8 7 2.0196 3.5440 -1.2508 9 6 1.6035 4.4082 -2.1976 10 8 0.7998 4.0502 -3.0363 11 6 2.1238 5.7922 -2.2155 12 6 3.0461 6.2063 -1.2519 13 6 3.5306 7.4987 -1.2694 14 6 3.1116 8.3859 -2.2425 15 6 2.1884 7.9857 -3.2041 16 16 1.6514 9.1232 -4.4380 17 6 0.1737 9.7173 -3.6839 18 1 -0.0859 9.4037 -2.6836 19 6 -0.6561 10.5878 -4.3753 20 7 -1.7596 11.0320 -3.8119 21 14 -0.2067 11.1308 -6.1051 22 1 -0.7931 10.1852 -7.0887 23 1 -0.7409 12.4945 -6.3504 24 1 1.2710 11.1443 -6.2517 25 6 1.6951 6.6875 -3.1940 26 1 -0.3633 0.6039 0.8316 27 1 -0.3633 0.4182 -0.9387 28 1 -0.3634 -1.0220 0.1072 29 1 1.8933 -0.5140 -0.8899 30 1 1.8934 -0.5139 0.8901 31 1 1.8752 3.0286 1.2483 32 1 3.9131 1.0151 -0.9746 33 1 3.9350 2.4656 0.0569 34 1 5.1943 0.6067 1.1089 35 1 3.7612 1.0336 2.0739 36 1 3.7394 -0.4167 1.0423 37 1 0.4146 2.1950 -1.1968 38 1 1.8270 1.6513 -2.1336 39 1 2.6607 3.8298 -0.5813 40 1 3.3805 5.5149 -0.4925 41 1 4.2440 7.8162 -0.5233 42 1 3.4978 9.3944 -2.2539 43 1 -2.3397 11.6410 -4.2951 44 1 0.9819 6.3729 -3.9414 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079911354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:09 Heat of formation + Delta-G solvation = -103.293718 kcal Electronic energy + Delta-G solvation = -24558.936635 eV Core-core repulsion = 20986.690010 eV Total energy + Delta-G solvation = -3572.246625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49590 -40.06162 -39.01146 -35.50120 -34.73182 -34.56470 -32.74850 -32.37966 -31.97060 -28.97417 -27.93434 -25.76158 -24.44080 -23.91011 -23.58256 -21.75409 -20.98084 -20.15658 -19.22154 -17.67923 -17.49816 -17.15582 -16.85509 -16.66308 -16.46909 -15.92510 -15.64381 -15.53454 -15.01321 -14.91470 -14.72965 -14.70057 -14.51112 -14.31607 -13.91037 -13.61328 -13.22644 -13.14259 -13.08518 -12.87166 -12.80910 -12.69719 -12.50113 -12.29995 -11.89333 -11.86619 -11.82219 -11.39396 -11.23928 -11.18469 -10.95461 -10.82604 -10.36179 -9.94824 -9.76838 -9.15719 -8.55174 -6.29453 -0.23608 0.19167 1.05342 1.30386 1.42806 1.63580 1.73578 1.97425 2.20490 2.57751 2.83066 2.94906 3.22350 3.50937 3.62762 3.73111 3.82270 3.90176 3.99640 4.29819 4.31546 4.38003 4.42733 4.52332 4.54693 4.59796 4.64970 4.71556 4.84692 4.88150 4.96337 5.05674 5.16013 5.16553 5.17751 5.24183 5.28021 5.29314 5.42732 5.45668 5.48150 5.67443 5.81156 6.08813 6.34320 6.73610 6.87267 7.05852 8.58530 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.002630 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.403089 B =10643.547161 C =11260.533811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C 0.134 3.866 4 O -0.561 6.561 5 C -0.150 4.150 6 C -0.149 4.149 7 C 0.091 3.909 8 N -0.705 5.705 9 C 0.563 3.437 10 O -0.581 6.581 11 C -0.158 4.158 12 C -0.059 4.059 13 C -0.120 4.120 14 C -0.058 4.058 15 C -0.119 4.119 16 S -0.116 6.116 17 C -0.524 4.524 18 H 0.045 0.955 19 C 0.040 3.960 20 N -0.920 5.920 21 Si 0.922 3.078 22 H -0.263 1.263 23 H -0.257 1.257 24 H -0.225 1.225 25 C -0.044 4.044 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.383 0.617 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.413 0.587 40 H 0.176 0.824 41 H 0.179 0.821 42 H 0.141 0.859 43 H 0.278 0.722 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.365 -20.708 11.743 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C 0.093 3.907 4 O -0.368 6.368 5 C -0.187 4.187 6 C -0.206 4.206 7 C -0.033 4.033 8 N -0.359 5.359 9 C 0.351 3.649 10 O -0.461 6.461 11 C -0.163 4.163 12 C -0.077 4.077 13 C -0.139 4.139 14 C -0.079 4.079 15 C -0.230 4.230 16 S 0.118 5.882 17 C -0.670 4.670 18 H 0.064 0.936 19 C -0.165 4.165 20 N -0.558 5.558 21 Si 0.743 3.257 22 H -0.188 1.188 23 H -0.181 1.181 24 H -0.149 1.149 25 C -0.066 4.066 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.232 0.768 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.253 0.747 40 H 0.193 0.807 41 H 0.197 0.803 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.812 -21.138 10.229 28.310 hybrid contribution -1.038 0.935 0.381 1.448 sum 14.774 -20.203 10.610 27.185 Atomic orbital electron populations 1.21792 0.96026 1.02075 1.01455 1.21589 0.96111 0.92937 1.04070 1.21466 0.93688 0.93110 0.82475 1.86583 1.78541 1.29806 1.41858 1.22228 0.93476 1.02194 1.00841 1.21751 1.00918 1.00085 0.97839 1.22265 0.99495 0.81417 1.00088 1.45611 1.46881 1.11795 1.31639 1.18392 0.80290 0.85307 0.80919 1.90771 1.35742 1.79190 1.40436 1.19928 1.03119 0.93438 0.99839 1.21742 0.92887 0.97119 0.95944 1.21586 1.01002 0.92664 0.98672 1.22104 0.93280 1.00820 0.91703 1.22074 1.02236 0.96370 1.02295 1.82619 1.29278 1.47930 1.28366 1.22372 1.08137 1.33049 1.03487 0.93627 1.25741 0.93460 0.94602 1.02710 1.70033 1.12924 1.32643 1.40169 0.85765 0.82006 0.79186 0.78757 1.18776 1.18108 1.14887 1.21645 0.95952 0.92247 0.96735 0.93014 0.93600 0.91664 0.89238 0.89518 0.76785 0.90293 0.90387 0.91980 0.92470 0.92131 0.92057 0.90795 0.74736 0.80682 0.80324 0.84159 0.91247 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.28 71.98 0.67 -1.71 16 2 C -0.11 -1.31 4.68 30.60 0.14 -1.17 16 3 C 0.13 1.65 0.51 -10.79 -0.01 1.64 16 4 O -0.56 -7.75 11.79 -148.98 -1.76 -9.51 16 5 C -0.15 -1.26 4.93 30.59 0.15 -1.11 16 6 C -0.15 -1.18 9.32 71.98 0.67 -0.51 16 7 C 0.09 1.66 4.40 86.38 0.38 2.04 16 8 N -0.70 -13.21 5.00 -465.95 -2.33 -15.54 16 9 C 0.56 17.11 7.77 86.79 0.67 17.79 16 10 O -0.58 -23.59 16.34 -3.89 -0.06 -23.65 16 11 C -0.16 -4.91 5.87 -20.11 -0.12 -5.03 16 12 C -0.06 -1.21 9.54 22.57 0.22 -0.99 16 13 C -0.12 -2.62 10.02 22.21 0.22 -2.40 16 14 C -0.06 -1.89 9.79 22.48 0.22 -1.67 16 15 C -0.12 -4.99 5.45 22.65 0.12 -4.87 16 16 S -0.12 -5.78 19.38 -56.49 -1.09 -6.87 16 17 C -0.52 -31.59 10.01 67.94 0.68 -30.91 16 18 H 0.05 3.05 8.02 -2.91 -0.02 3.03 16 19 C 0.04 2.38 5.50 84.84 0.47 2.84 16 20 N -0.92 -57.54 13.97 21.63 0.30 -57.24 16 21 Si 0.92 44.28 27.73 68.60 1.90 46.19 16 22 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.23 -10.24 6.74 99.48 0.67 -9.57 16 25 C -0.04 -1.81 9.34 22.70 0.21 -1.59 16 26 H 0.05 0.93 7.55 -2.38 -0.02 0.91 16 27 H 0.04 0.79 6.78 -2.39 -0.02 0.77 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.93 6.42 -2.38 -0.02 0.91 16 31 H 0.38 3.24 8.04 -74.05 -0.60 2.65 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.44 6.84 -2.39 -0.02 0.43 16 34 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.06 0.52 7.82 -2.39 -0.02 0.50 16 36 H 0.06 0.47 6.37 -2.39 -0.02 0.45 16 37 H 0.06 1.44 6.62 -2.39 -0.02 1.43 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.41 4.37 4.46 -92.71 -0.41 3.95 16 40 H 0.18 1.56 6.40 -2.91 -0.02 1.54 16 41 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.28 15.96 8.31 -92.70 -0.77 15.19 16 44 H 0.10 4.93 7.65 -2.91 -0.02 4.90 16 Total: -1.00 -80.91 369.68 1.65 -79.26 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.02 Total: 14.98 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 4.70 Total: -27.62 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -2.03 Total: -72.78 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.82 Total: -33.16 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.19 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.09 Total: -6.87 kcal Total: -80.91 1.65 -79.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079911354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.031 kcal (2) G-P(sol) polarization free energy of solvation -80.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds