Wall clock time and date at job start Tue Mar 31 2020 14:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46999 * 2 1 4 4 C 1.53000 * 109.46781 * 119.99717 * 2 1 3 5 5 C 1.52995 * 109.47123 * 60.00359 * 4 2 1 6 6 O 1.42902 * 109.47194 * 299.99912 * 4 2 1 7 7 C 1.53004 * 109.46781 * 179.97438 * 4 2 1 8 8 N 1.46505 * 109.46932 * 185.00132 * 7 4 2 9 9 C 1.34779 * 119.99610 * 180.02562 * 8 7 4 10 10 O 1.21547 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.47866 * 119.99546 * 179.97438 * 9 8 7 12 12 C 1.39670 * 120.10091 * 359.72593 * 11 9 8 13 13 C 1.38038 * 120.03769 * 179.78757 * 12 11 9 14 14 C 1.38181 * 120.24356 * 0.46024 * 13 12 11 15 15 C 1.39182 * 120.19877 * 359.79585 * 14 13 12 16 16 S 1.76205 * 120.01866 * 179.97438 * 15 14 13 17 17 C 1.76203 * 99.99781 * 265.52338 * 16 15 14 18 18 H 1.08005 * 120.00026 * 5.11902 * 17 16 15 19 19 C 1.38726 * 119.99940 * 185.11713 * 17 16 15 20 20 N 1.31628 * 120.00108 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46810 * 60.00521 * 21 19 17 23 23 H 1.48503 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47459 * 300.00598 * 21 19 17 25 25 C 1.38873 * 119.95895 * 359.97084 * 15 14 13 26 26 H 1.09003 * 109.47439 * 300.00540 * 1 2 3 27 27 H 1.09003 * 109.46966 * 59.99847 * 1 2 3 28 28 H 1.09003 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46897 * 239.99533 * 2 1 3 30 30 H 1.08994 * 109.47224 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47386 * 299.99896 * 3 2 1 32 32 H 1.09003 * 109.47466 * 59.99476 * 3 2 1 33 33 H 1.09003 * 109.47386 * 179.97438 * 5 4 2 34 34 H 1.09007 * 109.47017 * 299.99405 * 5 4 2 35 35 H 1.09003 * 109.47456 * 59.99475 * 5 4 2 36 36 H 0.96695 * 113.99809 * 300.00244 * 6 4 2 37 37 H 1.08997 * 109.47121 * 65.00483 * 7 4 2 38 38 H 1.08994 * 109.46811 * 305.00052 * 7 4 2 39 39 H 0.96998 * 119.99648 * 359.97438 * 8 7 4 40 40 H 1.08005 * 119.98381 * 359.97438 * 12 11 9 41 41 H 1.08001 * 119.88283 * 180.20620 * 13 12 11 42 42 H 1.08001 * 119.89992 * 179.76302 * 14 13 12 43 43 H 0.96992 * 119.99726 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.11897 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2493 6 8 1.5636 -0.0475 2.4160 7 6 3.5700 -0.7218 1.2490 8 7 4.0582 -1.5140 2.3805 9 6 5.3833 -1.6553 2.5822 10 8 6.1732 -1.1258 1.8252 11 6 5.8761 -2.4544 3.7246 12 6 4.9703 -3.0590 4.5991 13 6 5.4317 -3.8084 5.6626 14 6 6.7894 -3.9562 5.8727 15 6 7.7010 -3.3537 5.0106 16 16 9.4313 -3.5447 5.2834 17 6 9.7575 -2.0838 6.2129 18 1 8.9433 -1.4388 6.5087 19 6 11.0603 -1.7621 6.5649 20 7 12.0527 -2.5480 6.2040 21 14 11.4063 -0.2130 7.5497 22 1 10.6904 -0.2823 8.8490 23 1 12.8665 -0.0976 7.7942 24 1 10.9371 0.9726 6.7886 25 6 7.2459 -2.6019 3.9352 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.8936 -2.6777 2.1391 34 1 0.4399 -2.1637 1.2493 35 1 1.8933 -2.6776 0.3593 36 1 1.8489 0.8740 2.4821 37 1 3.9337 0.3018 1.3384 38 1 3.9329 -1.1564 0.3176 39 1 3.4278 -1.9362 2.9848 40 1 3.9082 -2.9426 4.4414 41 1 4.7290 -4.2775 6.3353 42 1 7.1444 -4.5406 6.7087 43 1 12.9634 -2.3232 6.4505 44 1 7.9509 -2.1336 3.2644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079911857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:12 Heat of formation + Delta-G solvation = -79.482882 kcal Electronic energy + Delta-G solvation = -24511.164860 eV Core-core repulsion = 20939.950749 eV Total energy + Delta-G solvation = -3571.214110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.36345 -39.24025 -37.69794 -34.55728 -34.28907 -32.49761 -31.33089 -30.58062 -30.28665 -28.32606 -26.16662 -25.55844 -23.81692 -22.62296 -22.01042 -20.55650 -20.01598 -18.45760 -17.51524 -17.05507 -16.09099 -15.95774 -15.61814 -15.23307 -14.95956 -14.84883 -14.80683 -14.28314 -14.14659 -13.73662 -13.41440 -13.19517 -12.92530 -12.77897 -12.73027 -12.62423 -12.42530 -12.25923 -12.16741 -11.64492 -11.58288 -11.28829 -11.15508 -11.11266 -11.06405 -10.82341 -10.70266 -10.29409 -9.97547 -9.74988 -9.17030 -9.14190 -8.99569 -8.56956 -8.02153 -6.70302 -6.27499 -4.01504 1.17928 1.68121 3.04969 3.06419 3.22449 3.24411 3.27369 3.47785 3.84717 4.10250 4.20701 4.26186 4.27482 4.37486 4.65612 4.83646 4.92003 5.04225 5.08558 5.11573 5.21671 5.25877 5.29115 5.39716 5.41620 5.43816 5.47281 5.48607 5.53563 5.62390 5.73934 5.76965 5.88806 5.92140 5.92765 6.00568 6.26779 6.34737 6.60171 6.65369 6.94460 7.20480 7.24019 7.50820 7.58273 8.29907 8.33479 9.18145 10.79203 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.002595 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.596202 B =10786.096638 C =11424.623633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.160 4.160 4 C 0.125 3.875 5 C -0.143 4.143 6 O -0.553 6.553 7 C 0.094 3.906 8 N -0.725 5.725 9 C 0.562 3.438 10 O -0.537 6.537 11 C -0.155 4.155 12 C -0.089 4.089 13 C -0.141 4.141 14 C -0.055 4.055 15 C -0.107 4.107 16 S -0.035 6.035 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.871 5.871 21 Si 0.921 3.079 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.019 4.019 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.377 0.623 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.402 0.598 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.979 2.646 -9.648 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.217 4.217 4 C 0.084 3.916 5 C -0.200 4.200 6 O -0.360 6.360 7 C -0.030 4.030 8 N -0.380 5.380 9 C 0.351 3.649 10 O -0.414 6.414 11 C -0.159 4.159 12 C -0.108 4.108 13 C -0.161 4.161 14 C -0.076 4.076 15 C -0.218 4.218 16 S 0.200 5.800 17 C -0.667 4.667 18 H 0.093 0.907 19 C -0.136 4.136 20 N -0.506 5.506 21 Si 0.747 3.253 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.198 1.198 25 C -0.040 4.040 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.225 0.775 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.239 0.761 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.694 1.583 -10.411 25.018 hybrid contribution -0.672 2.322 1.090 2.651 sum -23.365 3.905 -9.321 25.457 Atomic orbital electron populations 1.21804 0.94123 1.02168 1.02013 1.21700 0.97169 0.96835 0.98052 1.21972 1.01647 0.95650 1.02396 1.21458 0.90902 0.93602 0.85678 1.21824 1.02332 0.93056 1.02813 1.86541 1.76797 1.29246 1.43411 1.22066 0.93740 0.96784 0.90420 1.45843 1.07085 1.54259 1.30812 1.18436 0.81799 0.80041 0.84637 1.90768 1.55345 1.48271 1.47033 1.19849 0.94827 1.03621 0.97640 1.21141 0.98083 0.96849 0.94750 1.21060 0.95834 1.00782 0.98398 1.21963 0.92284 0.96128 0.97240 1.22849 1.03398 0.99198 0.96321 1.83597 0.92602 1.32753 1.71089 1.22795 0.95607 1.09642 1.38670 0.90683 1.25001 0.94956 0.97639 0.95974 1.69978 0.99847 1.36887 1.43867 0.86179 0.77342 0.81824 0.79986 1.19821 1.20730 1.19801 1.21942 0.93560 0.93171 0.95367 0.91936 0.92751 0.92311 0.90060 0.91878 0.91951 0.92383 0.91819 0.91062 0.90794 0.77474 0.90973 0.90645 0.76085 0.86564 0.85844 0.85064 0.92006 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.70 37.16 0.32 -0.50 16 2 C -0.12 -0.72 2.34 -90.62 -0.21 -0.93 16 3 C -0.16 -0.92 8.54 37.16 0.32 -0.60 16 4 C 0.12 0.91 0.50 -90.62 -0.05 0.87 16 5 C -0.14 -0.99 8.26 37.16 0.31 -0.69 16 6 O -0.55 -4.38 12.21 -35.23 -0.43 -4.81 16 7 C 0.09 0.93 4.31 -4.04 -0.02 0.91 16 8 N -0.73 -8.59 5.14 -61.24 -0.31 -8.90 16 9 C 0.56 9.23 7.77 -12.32 -0.10 9.13 16 10 O -0.54 -10.74 16.34 5.32 0.09 -10.65 16 11 C -0.15 -2.66 5.87 -105.00 -0.62 -3.27 16 12 C -0.09 -1.26 9.54 -39.12 -0.37 -1.63 16 13 C -0.14 -2.06 10.02 -39.68 -0.40 -2.46 16 14 C -0.06 -1.00 9.79 -39.25 -0.38 -1.38 16 15 C -0.11 -2.31 5.45 -39.00 -0.21 -2.53 16 16 S -0.03 -0.91 21.41 -107.50 -2.30 -3.21 16 17 C -0.52 -14.78 9.46 30.91 0.29 -14.49 16 18 H 0.08 2.11 7.79 -52.48 -0.41 1.71 16 19 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 20 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 21 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 26 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 6.43 -51.93 -0.33 -0.01 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.29 6.78 -51.93 -0.35 -0.06 16 33 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 34 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 2.24 7.33 45.56 0.33 2.57 16 37 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.40 4.02 5.02 -40.82 -0.20 3.82 16 40 H 0.12 1.21 6.40 -52.48 -0.34 0.87 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -33.25 371.04 -8.79 -42.04 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.56 Total: 4.57 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -1.57 Total: -16.33 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.42 Total: -33.77 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.34 Total: -15.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.25 -8.79 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079911857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.447 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds