Wall clock time and date at job start Tue Mar 31 2020 14:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46999 * 2 1 4 4 C 1.53000 * 109.46781 * 119.99717 * 2 1 3 5 5 C 1.52995 * 109.47123 * 60.00359 * 4 2 1 6 6 O 1.42902 * 109.47194 * 299.99912 * 4 2 1 7 7 C 1.53004 * 109.46781 * 179.97438 * 4 2 1 8 8 N 1.46505 * 109.46932 * 185.00132 * 7 4 2 9 9 C 1.34779 * 119.99610 * 180.02562 * 8 7 4 10 10 O 1.21547 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.47866 * 119.99546 * 179.97438 * 9 8 7 12 12 C 1.39670 * 120.10091 * 359.72593 * 11 9 8 13 13 C 1.38038 * 120.03769 * 179.78757 * 12 11 9 14 14 C 1.38181 * 120.24356 * 0.46024 * 13 12 11 15 15 C 1.39182 * 120.19877 * 359.79585 * 14 13 12 16 16 S 1.76205 * 120.01866 * 179.97438 * 15 14 13 17 17 C 1.76203 * 99.99781 * 265.52338 * 16 15 14 18 18 H 1.08005 * 120.00026 * 5.11902 * 17 16 15 19 19 C 1.38726 * 119.99940 * 185.11713 * 17 16 15 20 20 N 1.31628 * 120.00108 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46810 * 60.00521 * 21 19 17 23 23 H 1.48503 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47459 * 300.00598 * 21 19 17 25 25 C 1.38873 * 119.95895 * 359.97084 * 15 14 13 26 26 H 1.09003 * 109.47439 * 300.00540 * 1 2 3 27 27 H 1.09003 * 109.46966 * 59.99847 * 1 2 3 28 28 H 1.09003 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46897 * 239.99533 * 2 1 3 30 30 H 1.08994 * 109.47224 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47386 * 299.99896 * 3 2 1 32 32 H 1.09003 * 109.47466 * 59.99476 * 3 2 1 33 33 H 1.09003 * 109.47386 * 179.97438 * 5 4 2 34 34 H 1.09007 * 109.47017 * 299.99405 * 5 4 2 35 35 H 1.09003 * 109.47456 * 59.99475 * 5 4 2 36 36 H 0.96695 * 113.99809 * 300.00244 * 6 4 2 37 37 H 1.08997 * 109.47121 * 65.00483 * 7 4 2 38 38 H 1.08994 * 109.46811 * 305.00052 * 7 4 2 39 39 H 0.96998 * 119.99648 * 359.97438 * 8 7 4 40 40 H 1.08005 * 119.98381 * 359.97438 * 12 11 9 41 41 H 1.08001 * 119.88283 * 180.20620 * 13 12 11 42 42 H 1.08001 * 119.89992 * 179.76302 * 14 13 12 43 43 H 0.96992 * 119.99726 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.11897 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 -2.1637 1.2493 6 8 1.5636 -0.0475 2.4160 7 6 3.5700 -0.7218 1.2490 8 7 4.0582 -1.5140 2.3805 9 6 5.3833 -1.6553 2.5822 10 8 6.1732 -1.1258 1.8252 11 6 5.8761 -2.4544 3.7246 12 6 4.9703 -3.0590 4.5991 13 6 5.4317 -3.8084 5.6626 14 6 6.7894 -3.9562 5.8727 15 6 7.7010 -3.3537 5.0106 16 16 9.4313 -3.5447 5.2834 17 6 9.7575 -2.0838 6.2129 18 1 8.9433 -1.4388 6.5087 19 6 11.0603 -1.7621 6.5649 20 7 12.0527 -2.5480 6.2040 21 14 11.4063 -0.2130 7.5497 22 1 10.6904 -0.2823 8.8490 23 1 12.8665 -0.0976 7.7942 24 1 10.9371 0.9726 6.7886 25 6 7.2459 -2.6019 3.9352 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.8936 -2.6777 2.1391 34 1 0.4399 -2.1637 1.2493 35 1 1.8933 -2.6776 0.3593 36 1 1.8489 0.8740 2.4821 37 1 3.9337 0.3018 1.3384 38 1 3.9329 -1.1564 0.3176 39 1 3.4278 -1.9362 2.9848 40 1 3.9082 -2.9426 4.4414 41 1 4.7290 -4.2775 6.3353 42 1 7.1444 -4.5406 6.7087 43 1 12.9634 -2.3232 6.4505 44 1 7.9509 -2.1336 3.2644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079911857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:12 Heat of formation + Delta-G solvation = -102.369631 kcal Electronic energy + Delta-G solvation = -24512.157303 eV Core-core repulsion = 20939.950749 eV Total energy + Delta-G solvation = -3572.206554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43532 -40.14602 -39.01728 -35.64390 -34.82179 -34.66008 -32.52319 -31.94105 -31.09253 -28.98928 -27.75075 -26.84440 -24.91340 -23.75266 -23.08055 -21.69734 -20.74134 -20.01435 -19.15148 -17.84791 -17.33755 -16.93955 -16.85303 -16.66713 -16.54773 -15.89410 -15.74652 -15.47500 -15.21207 -14.98902 -14.68561 -14.56728 -13.91839 -13.78575 -13.44197 -13.29410 -13.24151 -13.10929 -13.06822 -12.96800 -12.91370 -12.75208 -12.65282 -12.40099 -12.12598 -11.77224 -11.74412 -11.37192 -11.29861 -11.20322 -10.84187 -10.70065 -10.30046 -9.91039 -9.71229 -8.81440 -8.39802 -6.20049 -0.19909 0.24149 1.28653 1.38219 1.44223 1.63363 1.77388 2.03188 2.23966 2.78813 2.93103 3.27763 3.40915 3.54293 3.65271 3.74822 3.81696 3.93111 4.01476 4.12709 4.33691 4.35834 4.46509 4.54614 4.59182 4.66225 4.72638 4.82268 4.88389 4.91164 4.92820 4.99970 5.02900 5.15788 5.20618 5.24780 5.30644 5.33025 5.37377 5.45290 5.48958 5.49568 5.84769 6.14836 6.41520 6.73364 7.00280 7.09991 8.67113 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.002595 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.596202 B =10786.096638 C =11424.623633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.160 4.160 4 C 0.135 3.865 5 C -0.147 4.147 6 O -0.560 6.560 7 C 0.090 3.910 8 N -0.701 5.701 9 C 0.560 3.440 10 O -0.583 6.583 11 C -0.157 4.157 12 C -0.064 4.064 13 C -0.120 4.120 14 C -0.062 4.062 15 C -0.128 4.128 16 S -0.094 6.094 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.019 3.981 20 N -0.906 5.906 21 Si 0.992 3.008 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.044 4.044 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.385 0.615 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.415 0.585 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.136 0.864 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.938 3.087 -8.755 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C -0.217 4.217 4 C 0.094 3.906 5 C -0.204 4.204 6 O -0.368 6.368 7 C -0.034 4.034 8 N -0.354 5.354 9 C 0.348 3.652 10 O -0.464 6.464 11 C -0.162 4.162 12 C -0.082 4.082 13 C -0.139 4.139 14 C -0.083 4.083 15 C -0.240 4.240 16 S 0.140 5.860 17 C -0.684 4.684 18 H 0.085 0.915 19 C -0.186 4.186 20 N -0.542 5.542 21 Si 0.813 3.187 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.066 4.066 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.186 0.814 41 H 0.193 0.807 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.709 2.011 -9.514 28.424 hybrid contribution 0.360 2.152 0.738 2.303 sum -26.349 4.163 -8.776 28.082 Atomic orbital electron populations 1.21776 0.93436 1.02442 1.02111 1.21680 0.97589 0.96760 0.97436 1.21978 1.00926 0.95749 1.03087 1.21385 0.88661 0.94323 0.86229 1.21892 1.02962 0.92461 1.03124 1.86523 1.76741 1.30023 1.43547 1.22270 0.95761 0.96001 0.89325 1.45672 1.05468 1.53211 1.31063 1.18406 0.82958 0.79728 0.84060 1.90752 1.56851 1.50252 1.48559 1.19957 0.93680 1.03924 0.98672 1.21674 0.99954 0.93938 0.92644 1.21549 0.94609 0.99251 0.98518 1.22083 0.93650 0.95834 0.96720 1.22503 1.00476 1.02423 0.98566 1.83479 0.98392 1.32733 1.71379 1.23028 0.95912 1.10197 1.39244 0.91485 1.26014 0.94558 1.01059 0.96963 1.70102 1.00297 1.38769 1.45051 0.85104 0.77763 0.77213 0.78598 1.18481 1.19505 1.19572 1.21619 0.95081 0.94543 0.95396 0.92357 0.92142 0.91949 0.89855 0.92988 0.91430 0.91614 0.91804 0.90202 0.90239 0.76536 0.91534 0.91105 0.74578 0.81414 0.80680 0.84597 0.91674 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.70 71.98 0.63 -0.61 16 2 C -0.12 -1.16 2.34 -10.79 -0.03 -1.18 16 3 C -0.16 -1.59 8.54 71.98 0.61 -0.98 16 4 C 0.14 1.64 0.50 -10.79 -0.01 1.63 16 5 C -0.15 -1.57 8.26 71.98 0.59 -0.97 16 6 O -0.56 -7.18 12.21 -148.98 -1.82 -9.00 16 7 C 0.09 1.64 4.31 86.38 0.37 2.01 16 8 N -0.70 -14.96 5.14 -465.95 -2.39 -17.36 16 9 C 0.56 18.05 7.77 86.79 0.67 18.72 16 10 O -0.58 -24.11 16.34 -3.86 -0.06 -24.18 16 11 C -0.16 -5.26 5.87 -20.11 -0.12 -5.38 16 12 C -0.06 -1.52 9.54 22.57 0.22 -1.31 16 13 C -0.12 -2.97 10.02 22.21 0.22 -2.75 16 14 C -0.06 -2.18 9.79 22.48 0.22 -1.96 16 15 C -0.13 -5.75 5.45 22.65 0.12 -5.63 16 16 S -0.09 -5.23 21.41 -56.49 -1.21 -6.44 16 17 C -0.54 -31.84 9.46 67.94 0.64 -31.20 16 18 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 19 C 0.02 1.12 5.49 84.84 0.47 1.59 16 20 N -0.91 -55.13 13.22 21.64 0.29 -54.84 16 21 Si 0.99 45.01 29.55 68.60 2.03 47.03 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C -0.04 -1.92 9.34 22.70 0.21 -1.71 16 26 H 0.06 0.58 7.68 -2.39 -0.02 0.56 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.51 6.43 -2.39 -0.02 0.50 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.64 6.54 -2.39 -0.02 0.62 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.54 6.78 -2.39 -0.02 0.53 16 33 H 0.06 0.67 6.57 -2.39 -0.02 0.66 16 34 H 0.08 0.74 6.43 -2.38 -0.02 0.73 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.38 3.57 7.33 -74.06 -0.54 3.03 16 37 H 0.07 1.33 6.71 -2.39 -0.02 1.31 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.41 6.59 5.02 -92.71 -0.47 6.13 16 40 H 0.17 2.34 6.40 -2.91 -0.02 2.32 16 41 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 42 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.10 5.05 7.65 -2.91 -0.02 5.03 16 Total: -1.00 -77.83 371.04 1.68 -76.15 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.02 Total: 18.36 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.84 Total: -29.72 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -2.11 Total: -72.20 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.88 Total: -33.17 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.21 Total: -6.44 kcal Total: -77.83 1.68 -76.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079911857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.224 kcal (2) G-P(sol) polarization free energy of solvation -77.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds