Wall clock time and date at job start Tue Mar 31 2020 13:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47445 * 2 1 4 4 C 1.38261 * 119.99760 * 270.02291 * 3 2 1 5 5 C 1.38218 * 119.99380 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.00459 * 359.76765 * 5 4 3 7 7 C 1.38215 * 119.99789 * 0.46248 * 6 5 4 8 8 S 1.76201 * 120.00180 * 179.79184 * 7 6 5 9 9 O 1.42094 * 106.40360 * 156.18696 * 8 7 6 10 10 O 1.42101 * 106.40061 * 23.26186 * 8 7 6 11 11 N 1.65602 * 107.21409 * 269.72971 * 8 7 6 12 12 C 1.46496 * 120.00281 * 90.00002 * 11 8 7 13 13 C 1.50706 * 109.47106 * 264.99512 * 12 11 8 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00200 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00139 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47145 * 89.99836 * 17 15 13 19 19 H 1.48496 * 109.47547 * 210.00333 * 17 15 13 20 20 H 1.48499 * 109.47030 * 330.00237 * 17 15 13 21 21 C 1.46507 * 119.99575 * 269.99554 * 11 8 7 22 22 C 1.52998 * 109.46948 * 265.00178 * 21 11 8 23 23 C 1.53003 * 117.49745 * 243.74629 * 22 21 11 24 24 C 1.53005 * 117.49777 * 175.08712 * 22 21 11 25 25 C 1.38209 * 120.00277 * 89.99468 * 3 2 1 26 26 H 1.09003 * 109.47460 * 300.00120 * 1 2 3 27 27 H 1.09006 * 109.46987 * 60.00385 * 1 2 3 28 28 H 1.08997 * 109.47556 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47460 * 239.99880 * 2 1 3 30 30 H 1.09002 * 109.47280 * 120.00025 * 2 1 3 31 31 H 1.07990 * 120.00301 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.99331 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.00191 * 180.25661 * 6 5 4 34 34 H 1.09001 * 109.47001 * 144.99803 * 12 11 8 35 35 H 1.09000 * 109.47574 * 25.00019 * 12 11 8 36 36 H 0.96999 * 120.00061 * 179.97438 * 16 15 13 37 37 H 1.08994 * 109.47044 * 25.00454 * 21 11 8 38 38 H 1.09003 * 109.47057 * 145.00379 * 21 11 8 39 39 H 1.08997 * 115.55547 * 29.41875 * 22 21 11 40 40 H 1.08999 * 117.50006 * 0.02562 * 23 22 21 41 41 H 1.09001 * 117.49698 * 145.02265 * 23 22 21 42 42 H 1.08997 * 117.49844 * 214.97724 * 24 22 21 43 43 H 1.08999 * 117.49592 * 0.02562 * 24 22 21 44 44 H 1.08010 * 119.99654 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0726 -1.1974 5 6 2.7226 3.3759 -1.1973 6 6 2.9485 4.0293 0.0000 7 6 2.7231 3.3760 1.1969 8 16 3.0161 4.2068 2.7229 9 8 2.2086 3.5571 3.6950 10 8 2.9306 5.5978 2.4453 11 7 4.5890 3.9107 3.1480 12 6 5.6512 4.8156 2.7017 13 6 6.2696 4.2790 1.4364 14 1 5.9072 3.3564 1.0075 15 6 7.2978 4.9657 0.8266 16 7 7.8371 4.4977 -0.2778 17 14 7.9240 6.5618 1.5681 18 1 9.0206 6.2664 2.5248 19 1 8.4340 7.4433 0.4874 20 1 6.8151 7.2446 2.2818 21 6 4.9183 2.7438 3.9704 22 6 4.9817 3.1585 5.4418 23 6 6.3306 3.0343 6.1532 24 6 5.2003 2.0544 6.4781 25 6 2.2626 2.0724 1.1969 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0824 1.5636 -2.1326 32 1 2.9027 3.8850 -2.1327 33 1 3.3042 5.0491 0.0000 34 1 6.4146 4.8896 3.4762 35 1 5.2309 5.8029 2.5104 36 1 8.5602 4.9811 -0.7071 37 1 4.1515 1.9801 3.8409 38 1 5.8848 2.3441 3.6636 39 1 4.3393 3.9929 5.7233 40 1 7.1728 2.6575 5.5729 41 1 6.5753 3.7867 6.9029 42 1 4.7020 2.1625 7.4415 43 1 5.2993 1.0326 6.1116 44 1 2.0829 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081052924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:37 Heat of formation + Delta-G solvation = -48.252267 kcal Electronic energy + Delta-G solvation = -26132.394663 eV Core-core repulsion = 22562.534814 eV Total energy + Delta-G solvation = -3569.859849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.35141 -38.91971 -38.34180 -36.95008 -36.44727 -35.11040 -34.39909 -32.21420 -30.38320 -30.22334 -27.12142 -24.93059 -24.31659 -23.80956 -23.13538 -22.22886 -21.68586 -19.79002 -19.03085 -18.57008 -18.34844 -17.54960 -17.00286 -16.70326 -16.13598 -15.98213 -15.63971 -15.35174 -14.99172 -14.77635 -14.45834 -14.42200 -14.31025 -14.11502 -13.75864 -13.40804 -13.28996 -13.22349 -13.11112 -13.03993 -12.87410 -12.72792 -12.46397 -12.33655 -12.26513 -12.10136 -12.00230 -11.77815 -11.67800 -11.55325 -11.22022 -10.76801 -10.74931 -10.31299 -9.79864 -9.73161 -8.26949 -6.30731 -0.58233 -0.10477 0.33321 1.36074 1.40346 1.50060 1.96386 2.35871 2.51579 2.77925 2.98481 3.08021 3.28552 3.73434 3.79200 3.86105 3.97561 4.04707 4.17017 4.22491 4.23691 4.27787 4.45809 4.51218 4.52947 4.63346 4.78101 4.80709 4.84712 4.87523 4.97275 5.03053 5.05039 5.09035 5.09122 5.16894 5.28736 5.33645 5.33810 5.38668 5.39601 5.48525 5.50405 5.75980 5.92490 6.32143 6.73852 7.33186 8.88289 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.005989 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.556956 B = 4674.267560 C = 6235.173332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.109 4.109 4 C -0.064 4.064 5 C -0.144 4.144 6 C -0.032 4.032 7 C -0.675 4.675 8 S 2.697 3.303 9 O -0.974 6.974 10 O -0.993 6.993 11 N -0.976 5.976 12 C 0.222 3.778 13 C -0.532 4.532 14 H 0.050 0.950 15 C 0.026 3.974 16 N -0.936 5.936 17 Si 0.919 3.081 18 H -0.259 1.259 19 H -0.283 1.283 20 H -0.252 1.252 21 C 0.156 3.844 22 C -0.190 4.190 23 C -0.179 4.179 24 C -0.155 4.155 25 C -0.037 4.037 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.266 0.734 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 -8.889 4.344 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.110 4.110 4 C -0.082 4.082 5 C -0.163 4.163 6 C -0.051 4.051 7 C -0.764 4.764 8 S 2.790 3.210 9 O -0.965 6.965 10 O -0.984 6.984 11 N -0.813 5.813 12 C 0.097 3.903 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.173 4.173 16 N -0.576 5.576 17 Si 0.743 3.257 18 H -0.184 1.184 19 H -0.209 1.209 20 H -0.176 1.176 21 C 0.031 3.969 22 C -0.210 4.210 23 C -0.216 4.216 24 C -0.193 4.193 25 C -0.056 4.056 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.179 0.821 32 H 0.164 0.836 33 H 0.138 0.862 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.727 -8.343 4.700 14.379 hybrid contribution 0.985 0.802 -0.781 1.491 sum -9.742 -7.541 3.919 12.928 Atomic orbital electron populations 1.21771 0.93719 1.02876 1.01993 1.20628 0.96911 0.90033 1.04346 1.20376 0.99991 0.98164 0.92455 1.21689 0.93695 0.93671 0.99104 1.21541 1.00375 0.96266 0.98122 1.20947 0.92321 0.99473 0.92374 1.30781 1.17043 1.08725 1.19828 1.01451 0.72520 0.73146 0.73886 1.93502 1.67265 1.77062 1.58664 1.93484 1.86410 1.32253 1.86268 1.57062 1.23839 1.37069 1.63343 1.19385 0.86994 0.89112 0.94791 1.21573 1.17820 1.09261 1.08435 0.93221 1.25562 0.96364 1.00445 0.94929 1.70017 1.26441 1.41113 1.20053 0.86121 0.79974 0.80520 0.79056 1.18386 1.20889 1.17566 1.20882 1.02677 0.85993 0.87339 1.22739 1.01808 1.02904 0.93586 1.23116 0.91988 1.03150 1.03298 1.23046 1.01523 0.95392 0.99300 1.20972 0.93286 0.91373 0.99991 0.93335 0.92406 0.90343 0.89128 0.90104 0.82141 0.83613 0.86215 0.93250 0.94427 0.92478 0.89426 0.90036 0.88918 0.88726 0.88171 0.87345 0.87431 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.89 71.98 0.71 -1.66 16 2 C -0.08 -1.54 6.06 29.85 0.18 -1.36 16 3 C -0.11 -2.94 5.13 -19.87 -0.10 -3.04 16 4 C -0.06 -1.70 9.70 22.27 0.22 -1.49 16 5 C -0.14 -4.65 10.05 22.27 0.22 -4.43 16 6 C -0.03 -1.23 9.52 22.27 0.21 -1.02 16 7 C -0.68 -25.71 5.97 22.27 0.13 -25.58 16 8 S 2.70 109.34 5.65 -56.49 -0.32 109.02 16 9 O -0.97 -38.46 16.25 -128.00 -2.08 -40.54 16 10 O -0.99 -46.06 15.83 -128.00 -2.03 -48.09 16 11 N -0.98 -39.52 2.77 -519.84 -1.44 -40.96 16 12 C 0.22 10.28 4.50 85.64 0.39 10.67 16 13 C -0.53 -28.51 9.94 25.60 0.25 -28.26 16 14 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 15 C 0.03 1.45 5.47 84.65 0.46 1.91 16 16 N -0.94 -55.44 13.96 21.44 0.30 -55.14 16 17 Si 0.92 42.29 27.47 68.60 1.88 44.17 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 21 C 0.16 5.27 5.63 86.38 0.49 5.76 16 22 C -0.19 -5.65 6.01 -10.79 -0.06 -5.72 16 23 C -0.18 -4.53 10.18 30.62 0.31 -4.22 16 24 C -0.16 -3.48 10.26 30.62 0.31 -3.16 16 25 C -0.04 -1.18 9.18 22.27 0.20 -0.98 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 30 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.16 3.03 8.06 -2.92 -0.02 3.00 16 32 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 33 H 0.12 5.01 7.61 -2.91 -0.02 4.99 16 34 H 0.05 2.17 7.54 -2.39 -0.02 2.15 16 35 H 0.04 1.84 5.97 -2.39 -0.01 1.82 16 36 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.09 2.62 7.61 -2.39 -0.02 2.61 16 38 H 0.08 2.81 7.84 -2.39 -0.02 2.79 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.09 2.46 8.03 -2.39 -0.02 2.44 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.15 4.12 7.62 -2.91 -0.02 4.10 16 Total: -1.00 -68.90 378.04 1.17 -67.74 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.92 Total: 26.37 kcal Atomic # 6 Polarization: -66.51 SS G_CDS: 3.93 Total: -62.58 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -1.14 Total: -96.10 kcal Atomic # 8 Polarization: -84.52 SS G_CDS: -4.11 Total: -88.62 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.17 kcal Atomic # 16 Polarization: 109.34 SS G_CDS: -0.32 Total: 109.02 kcal Total: -68.90 1.17 -67.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081052924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.484 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds