Wall clock time and date at job start Tue Mar 31 2020 14:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47261 * 2 1 4 4 O 1.42901 * 109.47180 * 60.30140 * 3 2 1 5 5 C 1.52998 * 109.47210 * 180.30525 * 3 2 1 6 6 C 1.52997 * 109.46958 * 304.99812 * 5 3 2 7 7 C 1.53002 * 109.46905 * 300.30271 * 3 2 1 8 8 N 1.46498 * 109.47217 * 178.89601 * 7 3 2 9 9 C 1.34774 * 119.99807 * 185.30900 * 8 7 3 10 10 O 1.21610 * 120.00373 * 0.02562 * 9 8 7 11 11 C 1.47427 * 119.99926 * 180.02562 * 9 8 7 12 12 C 1.39685 * 120.21437 * 0.02562 * 11 9 8 13 13 C 1.37807 * 119.93992 * 179.97438 * 12 11 9 14 14 C 1.38656 * 120.38073 * 0.02562 * 13 12 11 15 15 C 1.37914 * 120.43948 * 0.02562 * 14 13 12 16 16 C 1.39110 * 120.04858 * 359.97438 * 15 14 13 17 17 S 1.76207 * 120.18934 * 180.02562 * 16 15 14 18 18 C 1.76199 * 99.99667 * 7.29794 * 17 16 15 19 19 H 1.08001 * 120.00767 * 5.73733 * 18 17 16 20 20 C 1.38807 * 119.99801 * 185.73421 * 18 17 16 21 21 N 1.31552 * 120.00356 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46889 * 89.99743 * 22 20 18 24 24 H 1.48495 * 109.47191 * 209.99724 * 22 20 18 25 25 H 1.48499 * 109.46889 * 329.99933 * 22 20 18 26 26 H 1.08997 * 109.47013 * 64.06843 * 1 2 3 27 27 H 1.09000 * 109.47186 * 184.07139 * 1 2 3 28 28 H 1.09000 * 109.46975 * 304.06369 * 1 2 3 29 29 H 1.08997 * 109.47517 * 239.99322 * 2 1 3 30 30 H 1.09002 * 109.46935 * 119.99481 * 2 1 3 31 31 H 0.96699 * 113.99684 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47231 * 64.99769 * 5 3 2 33 33 H 1.09004 * 109.46925 * 184.99348 * 5 3 2 34 34 H 1.09008 * 109.47102 * 299.99400 * 6 5 3 35 35 H 1.08995 * 109.47583 * 60.00139 * 6 5 3 36 36 H 1.09002 * 109.46906 * 180.02562 * 6 5 3 37 37 H 1.09005 * 109.47067 * 58.89806 * 7 3 2 38 38 H 1.09000 * 109.47135 * 298.90444 * 7 3 2 39 39 H 0.96999 * 119.99800 * 5.31728 * 8 7 3 40 40 H 1.08000 * 120.02646 * 0.27302 * 12 11 9 41 41 H 1.07994 * 119.81092 * 179.97438 * 13 12 11 42 42 H 1.08005 * 119.78351 * 179.97438 * 14 13 12 43 43 H 1.07996 * 119.97573 * 180.02562 * 15 14 13 44 44 H 0.96998 * 120.00952 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5695 2.1141 1.1703 5 6 3.5700 1.4425 -0.0077 6 6 4.0859 0.6130 1.1699 7 6 1.5238 2.1659 -1.2454 8 7 1.9904 3.5545 -1.2322 9 6 1.5693 4.4159 -2.1793 10 8 0.8017 4.0407 -3.0447 11 6 2.0392 5.8133 -2.1663 12 6 2.9213 6.2490 -1.1747 13 6 3.3574 7.5563 -1.1683 14 6 2.9252 8.4445 -2.1413 15 6 2.0536 8.0313 -3.1270 16 6 1.6019 6.7158 -3.1507 17 16 0.4888 6.1837 -4.4088 18 6 0.4804 7.6157 -5.4354 19 1 1.1457 8.4386 -5.2200 20 6 -0.3814 7.6861 -6.5213 21 7 -1.1915 6.6835 -6.7843 22 14 -0.3898 9.2039 -7.6102 23 1 0.5878 9.0267 -8.7139 24 1 -1.7480 9.3979 -8.1784 25 1 -0.0159 10.3935 -6.8039 26 1 -0.3633 0.4494 -0.9242 27 1 -0.3633 -1.0251 0.0730 28 1 -0.3633 0.5756 0.8513 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.8549 3.0357 1.2364 32 1 3.9287 1.0098 -0.9416 33 1 3.9338 2.4661 0.0818 34 1 3.7273 1.0458 2.1039 35 1 3.7222 -0.4105 1.0804 36 1 5.1759 0.6134 1.1647 37 1 0.4339 2.1488 -1.2500 38 1 1.8987 1.6651 -2.1381 39 1 2.6024 3.8539 -0.5418 40 1 3.2650 5.5608 -0.4167 41 1 4.0390 7.8911 -0.4004 42 1 3.2728 9.4670 -2.1268 43 1 1.7221 8.7293 -3.8815 44 1 -1.7935 6.7324 -7.5433 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087038922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:17 Heat of formation + Delta-G solvation = -94.944406 kcal Electronic energy + Delta-G solvation = -25056.150432 eV Core-core repulsion = 21484.265860 eV Total energy + Delta-G solvation = -3571.884572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27249 -39.90705 -38.78483 -35.30337 -34.77076 -34.52796 -32.72100 -32.18419 -31.78212 -28.87814 -27.84539 -25.64910 -24.19345 -23.86943 -23.34490 -21.64734 -20.94955 -20.04673 -18.96269 -17.56058 -17.48324 -17.11530 -16.84824 -16.38932 -16.11298 -15.77317 -15.48911 -15.31507 -15.11706 -14.75899 -14.67313 -14.59268 -14.42652 -14.09350 -13.54601 -13.31599 -13.13838 -12.99345 -12.88944 -12.84497 -12.77604 -12.55090 -12.46376 -12.06167 -11.86683 -11.80056 -11.52271 -11.42824 -11.34941 -11.17516 -10.79833 -10.41870 -10.17553 -9.92843 -9.76714 -8.47357 -8.45790 -6.25039 0.03314 0.54061 1.26123 1.35831 1.44608 1.64342 2.01222 2.12483 2.25133 2.87113 3.03819 3.24209 3.26291 3.59657 3.76184 3.87067 3.92556 4.02583 4.27139 4.33624 4.43211 4.54751 4.58901 4.60711 4.62706 4.67554 4.75812 4.85610 4.89017 4.98720 5.07006 5.11109 5.18042 5.23735 5.29349 5.35735 5.40371 5.45394 5.49501 5.50479 5.57228 5.67839 6.09644 6.16096 6.56063 6.76843 6.95331 7.33720 8.59781 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.003289 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.686834 B = 8509.889683 C = 9773.361312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C 0.136 3.864 4 O -0.558 6.558 5 C -0.149 4.149 6 C -0.147 4.147 7 C 0.095 3.905 8 N -0.710 5.710 9 C 0.546 3.454 10 O -0.556 6.556 11 C -0.182 4.182 12 C -0.053 4.053 13 C -0.156 4.156 14 C -0.070 4.070 15 C -0.175 4.175 16 C -0.073 4.073 17 S 0.062 5.938 18 C -0.602 4.602 19 H 0.094 0.906 20 C 0.024 3.976 21 N -0.905 5.905 22 Si 0.993 3.007 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.257 1.257 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.383 0.617 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.409 0.591 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.149 0.851 43 H 0.117 0.883 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.930 -7.642 18.403 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C 0.095 3.905 4 O -0.366 6.366 5 C -0.187 4.187 6 C -0.204 4.204 7 C -0.029 4.029 8 N -0.366 5.366 9 C 0.335 3.665 10 O -0.436 6.436 11 C -0.195 4.195 12 C -0.073 4.073 13 C -0.179 4.179 14 C -0.091 4.091 15 C -0.201 4.201 16 C -0.191 4.191 17 S 0.321 5.679 18 C -0.749 4.749 19 H 0.112 0.888 20 C -0.182 4.182 21 N -0.540 5.540 22 Si 0.814 3.186 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.181 1.181 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.248 0.752 40 H 0.180 0.820 41 H 0.185 0.815 42 H 0.167 0.833 43 H 0.135 0.865 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.145 -9.697 17.377 22.808 hybrid contribution 0.476 2.573 -0.996 2.800 sum 11.621 -7.124 16.381 21.310 Atomic orbital electron populations 1.21779 0.96016 1.02010 1.01411 1.21583 0.96152 0.92958 1.03971 1.21429 0.93505 0.93014 0.82556 1.86559 1.77770 1.29514 1.42715 1.22214 0.93622 1.02167 1.00700 1.21745 1.00942 1.00070 0.97640 1.22157 0.99770 0.81389 0.99634 1.45523 1.50076 1.10305 1.30728 1.18518 0.80526 0.86015 0.81422 1.90796 1.36441 1.78550 1.37797 1.19479 1.06630 0.92595 1.00840 1.21436 0.93241 0.97257 0.95326 1.21335 1.03066 0.92929 1.00565 1.21549 0.93893 1.00943 0.92683 1.21447 1.02005 0.94689 1.01912 1.22996 0.99941 0.97130 0.99043 1.84943 1.47160 1.18887 1.16927 1.24247 1.27021 1.07355 1.16265 0.88790 1.26154 0.93113 1.00641 0.98257 1.70128 1.22221 1.32912 1.28774 0.85035 0.78167 0.77452 0.77909 1.19112 1.19811 1.18079 0.94008 0.91577 0.92782 0.89612 0.89223 0.76850 0.90733 0.90568 0.92254 0.92089 0.91980 0.92451 0.91844 0.75190 0.82002 0.81512 0.83337 0.86489 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.34 71.98 0.67 -2.28 16 2 C -0.11 -1.74 4.70 30.59 0.14 -1.60 16 3 C 0.14 2.28 0.50 -10.79 -0.01 2.28 16 4 O -0.56 -9.60 11.78 -148.98 -1.75 -11.35 16 5 C -0.15 -1.90 4.97 30.59 0.15 -1.75 16 6 C -0.15 -1.60 9.32 71.98 0.67 -0.93 16 7 C 0.09 2.31 4.48 86.38 0.39 2.70 16 8 N -0.71 -17.98 5.00 -466.36 -2.33 -20.31 16 9 C 0.55 20.90 7.75 86.66 0.67 21.57 16 10 O -0.56 -27.58 13.77 -4.06 -0.06 -27.64 16 11 C -0.18 -6.85 5.89 -19.95 -0.12 -6.96 16 12 C -0.05 -1.33 9.53 22.52 0.21 -1.12 16 13 C -0.16 -3.61 10.02 22.27 0.22 -3.39 16 14 C -0.07 -2.05 10.03 22.29 0.22 -1.82 16 15 C -0.18 -7.23 9.21 22.40 0.21 -7.03 16 16 C -0.07 -3.40 6.14 23.04 0.14 -3.26 16 17 S 0.06 3.60 18.56 -56.49 -1.05 2.56 16 18 C -0.60 -35.41 8.99 67.96 0.61 -34.80 16 19 H 0.09 5.20 5.00 -2.91 -0.01 5.19 16 20 C 0.02 1.38 5.49 84.87 0.47 1.85 16 21 N -0.91 -55.91 13.22 21.65 0.29 -55.62 16 22 Si 0.99 44.16 29.55 68.60 2.03 46.19 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 26 H 0.04 0.93 6.62 -2.39 -0.02 0.92 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.14 7.57 -2.39 -0.02 1.12 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.23 6.36 -2.39 -0.02 1.21 16 31 H 0.38 4.55 7.89 -74.06 -0.58 3.97 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.80 6.97 -2.38 -0.02 0.78 16 34 H 0.06 0.68 7.82 -2.38 -0.02 0.66 16 35 H 0.06 0.64 6.35 -2.39 -0.02 0.63 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 1.72 6.45 -2.38 -0.02 1.70 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.41 6.79 4.48 -92.71 -0.41 6.37 16 40 H 0.16 2.33 6.40 -2.91 -0.02 2.32 16 41 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 43 H 0.12 5.27 5.05 -2.91 -0.01 5.25 16 44 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -80.27 361.68 1.83 -78.44 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.04 Total: 24.29 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 4.66 Total: -36.55 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -2.05 Total: -75.93 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.81 Total: -38.99 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.05 Total: 2.56 kcal Total: -80.27 1.83 -78.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087038922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.505 kcal (2) G-P(sol) polarization free energy of solvation -80.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds