Wall clock time and date at job start Tue Mar 31 2020 14:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81396 * 103.00502 * 2 1 4 4 C 1.53000 * 109.46825 * 59.99835 * 3 2 1 5 5 C 1.53002 * 109.46986 * 300.00198 * 3 2 1 6 6 C 1.52996 * 109.47600 * 180.02562 * 3 2 1 7 7 N 1.46500 * 109.47128 * 59.99877 * 6 3 2 8 8 C 1.34774 * 120.00119 * 180.02562 * 7 6 3 9 9 O 1.21279 * 120.00124 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99954 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.47027 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96230 * 269.97567 * 11 10 8 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96947 * 89.99413 * 11 10 8 26 26 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46936 * 299.99990 * 1 2 3 28 28 H 1.09002 * 109.46817 * 59.99681 * 1 2 3 29 29 H 1.09003 * 109.47125 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47412 * 300.00273 * 4 3 2 31 31 H 1.09007 * 109.46913 * 60.00514 * 4 3 2 32 32 H 1.08996 * 109.47322 * 299.99727 * 5 3 2 33 33 H 1.09001 * 109.47118 * 59.99808 * 5 3 2 34 34 H 1.08997 * 109.47059 * 179.97438 * 5 3 2 35 35 H 1.09007 * 109.47155 * 300.00109 * 6 3 2 36 36 H 1.09003 * 109.47254 * 180.02562 * 6 3 2 37 37 H 0.97009 * 119.99766 * 0.02562 * 7 6 3 38 38 H 1.08993 * 109.47200 * 59.99691 * 10 8 7 39 39 H 1.09003 * 109.46989 * 299.99567 * 10 8 7 40 40 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 41 41 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 43 43 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.03594 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 1.6342 2.4266 1.2492 5 6 1.6342 2.4266 -1.2492 6 6 3.7424 1.9399 -0.0006 7 7 4.3050 1.3088 -1.1971 8 6 5.6354 1.3353 -1.4107 9 8 6.3669 1.8820 -0.6127 10 6 6.2140 0.6866 -2.6418 11 6 7.7114 0.8564 -2.6424 12 6 8.2807 1.9655 -3.2417 13 6 9.6543 2.1245 -3.2448 14 6 10.4619 1.1792 -2.6432 15 6 9.8937 0.0618 -2.0457 16 8 10.6851 -0.8721 -1.4590 17 6 12.0176 -0.7184 -1.5954 18 1 12.4128 0.1615 -2.0812 19 6 12.8807 -1.6900 -1.1119 20 7 14.1808 -1.5402 -1.2454 21 14 12.1971 -3.2122 -0.2723 22 1 11.9662 -4.2742 -1.2842 23 1 13.1685 -3.6969 0.7410 24 1 10.9134 -2.8757 0.3940 25 6 8.5136 -0.0955 -2.0451 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8790 3.4888 1.2491 30 1 0.5511 2.3038 1.2493 31 1 2.0531 1.9569 2.1392 32 1 2.0530 1.9571 -2.1392 33 1 0.5511 2.3039 -1.2492 34 1 1.8791 3.4887 -1.2490 35 1 4.1618 1.4701 0.8891 36 1 3.9877 3.0019 -0.0002 37 1 3.7198 0.8718 -1.8356 38 1 5.7950 1.1570 -3.5313 39 1 5.9683 -0.3754 -2.6424 40 1 7.6511 2.7087 -3.7082 41 1 10.0959 2.9914 -3.7139 42 1 11.5343 1.3066 -2.6414 43 1 14.7846 -2.2197 -0.9069 44 1 8.0686 -0.9616 -1.5779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089773063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:05 Heat of formation + Delta-G solvation = -68.607733 kcal Electronic energy + Delta-G solvation = -24273.302082 eV Core-core repulsion = 20702.559554 eV Total energy + Delta-G solvation = -3570.742528 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20012 -40.51160 -38.47231 -37.67975 -34.49637 -34.43674 -33.42204 -31.09430 -29.91142 -28.85048 -28.37799 -27.27050 -26.51105 -23.37711 -22.64108 -21.86487 -21.26428 -19.66274 -18.95110 -18.14381 -17.54934 -16.93312 -16.81065 -16.64422 -16.19971 -15.83742 -15.67435 -15.43336 -15.24143 -15.07103 -14.62174 -14.49045 -14.44298 -14.26506 -14.11215 -13.90687 -13.62641 -13.49921 -13.04393 -12.90880 -12.82834 -12.59447 -12.51025 -12.43742 -12.34383 -12.22671 -11.99398 -11.93120 -11.31177 -10.98261 -10.89026 -10.69626 -10.08573 -9.66415 -9.05961 -8.69036 -8.50526 -6.23022 0.49015 0.68136 0.70802 1.29053 1.33699 1.50713 1.61889 1.71105 2.22093 2.27652 2.78845 3.05556 3.15117 3.47518 3.72890 3.77559 3.97761 4.07937 4.13374 4.30290 4.34039 4.38746 4.42195 4.49471 4.55967 4.63481 4.65727 4.68955 4.71265 4.78651 4.79411 4.82749 4.94396 4.98267 5.17758 5.24868 5.25951 5.39360 5.43382 5.65676 5.73067 5.76984 5.91856 6.25418 6.57062 6.83905 7.30824 7.59324 8.61354 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.002525 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.999006 B =11085.147887 C =12059.108509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.296 6.296 3 C -0.030 4.030 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.144 3.856 7 N -0.713 5.713 8 C 0.514 3.486 9 O -0.579 6.579 10 C -0.090 4.090 11 C -0.027 4.027 12 C -0.170 4.170 13 C -0.078 4.078 14 C -0.241 4.241 15 C 0.118 3.882 16 O -0.248 6.248 17 C -0.400 4.400 18 H 0.080 0.920 19 C 0.010 3.990 20 N -0.923 5.923 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.183 4.183 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.145 0.855 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.107 0.893 43 H 0.285 0.715 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.403 7.259 -2.030 35.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.069 6.069 3 C -0.140 4.140 4 C -0.202 4.202 5 C -0.201 4.201 6 C 0.019 3.981 7 N -0.368 5.368 8 C 0.302 3.698 9 O -0.458 6.458 10 C -0.130 4.130 11 C -0.028 4.028 12 C -0.188 4.188 13 C -0.096 4.096 14 C -0.260 4.260 15 C 0.070 3.930 16 O -0.156 6.156 17 C -0.476 4.476 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.793 3.207 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.193 1.193 25 C -0.202 4.202 26 H 0.124 0.876 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.255 0.745 38 H 0.163 0.837 39 H 0.141 0.859 40 H 0.168 0.832 41 H 0.159 0.841 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -33.078 6.482 -1.293 33.732 hybrid contribution -0.114 0.247 0.334 0.430 sum -33.192 6.729 -0.959 33.881 Atomic orbital electron populations 1.23507 0.91448 1.07187 1.06044 1.87372 1.10445 1.11237 1.97894 1.22929 0.96337 0.93511 1.01212 1.22082 1.01668 1.01455 0.94954 1.22151 1.01626 1.01354 0.95006 1.21126 0.90375 0.98560 0.88058 1.45901 1.06800 1.58481 1.25623 1.20921 0.82121 0.79160 0.87598 1.90760 1.60455 1.46069 1.48515 1.20696 0.90283 1.04452 0.97528 1.19216 0.94667 0.93347 0.95563 1.21018 0.94407 0.98771 1.04603 1.21121 0.94093 0.97571 0.96770 1.21325 1.00496 0.97370 1.06810 1.19591 0.91470 0.89240 0.92719 1.83509 1.17935 1.46620 1.67513 1.20722 0.78247 1.08328 1.40298 0.90221 1.25272 0.94561 1.01505 0.97515 1.69728 1.02440 1.37270 1.46998 0.85224 0.78484 0.78155 0.78867 1.18615 1.18994 1.19333 1.20273 0.89718 1.02908 1.07296 0.87641 0.89546 0.88971 0.90327 0.90412 0.92060 0.91023 0.90692 0.90632 0.93075 0.90195 0.74500 0.83749 0.85895 0.83234 0.84075 0.87482 0.90559 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.87 113.37 1.12 0.36 16 2 S -0.30 -4.05 20.50 -56.49 -1.16 -5.21 16 3 C -0.03 -0.33 0.68 -10.79 -0.01 -0.34 16 4 C -0.14 -1.29 8.32 71.98 0.60 -0.69 16 5 C -0.14 -0.99 8.14 71.98 0.59 -0.40 16 6 C 0.14 2.53 4.56 86.38 0.39 2.93 16 7 N -0.71 -12.70 4.97 -463.06 -2.30 -15.00 16 8 C 0.51 13.24 7.82 87.66 0.69 13.92 16 9 O -0.58 -21.61 16.03 -3.03 -0.05 -21.66 16 10 C -0.09 -1.96 5.83 29.10 0.17 -1.79 16 11 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 12 C -0.17 -5.45 9.70 22.30 0.22 -5.24 16 13 C -0.08 -2.89 10.04 22.25 0.22 -2.67 16 14 C -0.24 -11.47 9.17 22.39 0.21 -11.26 16 15 C 0.12 6.04 6.65 22.58 0.15 6.19 16 16 O -0.25 -14.45 8.59 -22.74 -0.20 -14.64 16 17 C -0.40 -24.85 9.95 67.92 0.68 -24.17 16 18 H 0.08 5.18 5.44 -2.91 -0.02 5.16 16 19 C 0.01 0.58 5.49 84.83 0.47 1.05 16 20 N -0.92 -57.08 13.96 21.61 0.30 -56.77 16 21 Si 0.97 47.67 28.62 68.60 1.96 49.63 16 22 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 25 C -0.18 -7.74 9.65 22.39 0.22 -7.52 16 26 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.09 0.45 7.00 -2.39 -0.02 0.43 16 28 H 0.09 0.37 7.00 -2.39 -0.02 0.35 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.47 6.68 -2.39 -0.02 0.46 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 0.48 6.86 -2.39 -0.02 0.46 16 33 H 0.07 0.33 6.68 -2.39 -0.02 0.32 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.42 5.12 6.82 -92.70 -0.63 4.49 16 38 H 0.14 1.88 8.08 -2.39 -0.02 1.86 16 39 H 0.12 2.19 8.09 -2.39 -0.02 2.17 16 40 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 42 H 0.11 5.54 5.64 -2.91 -0.02 5.52 16 43 H 0.28 16.09 8.31 -92.71 -0.77 15.32 16 44 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -80.42 373.83 4.55 -75.86 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.38 Total: 18.42 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 5.61 Total: -30.63 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -2.00 Total: -71.77 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.24 Total: -36.30 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.96 Total: 49.63 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -1.16 Total: -5.21 kcal Total: -80.42 4.55 -75.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089773063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.256 kcal (2) G-P(sol) polarization free energy of solvation -80.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds