Wall clock time and date at job start Tue Mar 31 2020 14:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46777 * 2 1 4 4 C 1.53010 * 109.46822 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46933 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99794 * 275.00131 * 5 4 3 7 7 C 1.53002 * 117.49983 * 8.74974 * 6 5 4 8 8 C 1.52994 * 117.50137 * 300.08921 * 6 5 4 9 9 S 1.65594 * 120.00035 * 95.00037 * 5 4 3 10 10 O 1.42098 * 106.40280 * 156.45949 * 9 5 4 11 11 O 1.42102 * 106.40421 * 23.53973 * 9 5 4 12 12 C 1.76199 * 107.22073 * 269.99998 * 9 5 4 13 13 C 1.38641 * 119.75070 * 270.29627 * 12 9 5 14 14 C 1.37613 * 120.24587 * 180.30184 * 13 12 9 15 15 C 1.40709 * 119.74954 * 359.42635 * 14 13 12 16 16 C 1.41391 * 120.24881 * 180.29949 * 15 14 13 17 17 H 1.08004 * 120.00321 * 24.37553 * 16 15 14 18 18 C 1.39949 * 120.00394 * 204.37955 * 16 15 14 19 19 N 1.30826 * 119.99793 * 17.83971 * 18 16 15 20 20 Si 1.86793 * 120.00334 * 197.84214 * 18 16 15 21 21 H 1.48499 * 109.47118 * 89.99811 * 20 18 16 22 22 H 1.48498 * 109.47443 * 210.00158 * 20 18 16 23 23 H 1.48505 * 109.47294 * 329.99982 * 20 18 16 24 24 C 1.40717 * 119.50871 * 0.27696 * 15 14 13 25 25 C 1.37615 * 119.74803 * 359.97438 * 24 15 14 26 26 H 1.08999 * 109.46634 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46847 * 299.98908 * 1 2 3 28 28 H 1.08999 * 109.47656 * 59.99436 * 1 2 3 29 29 H 1.09006 * 109.46847 * 240.01092 * 2 1 3 30 30 H 1.08999 * 109.47656 * 120.00564 * 2 1 3 31 31 H 1.09000 * 109.46881 * 60.01143 * 3 2 1 32 32 H 1.08999 * 109.47488 * 300.00667 * 3 2 1 33 33 H 1.09000 * 109.46617 * 60.00788 * 4 3 2 34 34 H 1.09001 * 109.46963 * 300.00403 * 4 3 2 35 35 H 1.09007 * 115.54835 * 154.41765 * 6 5 4 36 36 H 1.08997 * 117.49973 * 359.97438 * 7 6 5 37 37 H 1.09002 * 117.49866 * 145.02294 * 7 6 5 38 38 H 1.09006 * 117.49958 * 214.98433 * 8 6 5 39 39 H 1.08999 * 117.49766 * 359.97438 * 8 6 5 40 40 H 1.07998 * 119.87235 * 0.02562 * 13 12 9 41 41 H 1.08007 * 120.12325 * 179.70340 * 14 13 12 42 42 H 0.97001 * 120.00110 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.12753 * 180.02562 * 24 15 14 44 44 H 1.08003 * 119.87743 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1976 3.5520 -1.2636 7 6 3.6283 2.8963 -2.5233 8 6 5.1431 2.9679 -2.3151 9 16 4.4527 3.5619 1.4289 10 8 5.3687 4.5989 1.1054 11 8 4.7505 2.5211 2.3494 12 6 2.9963 4.3531 2.0267 13 6 2.7222 5.6607 1.6561 14 6 1.5909 6.2906 2.1219 15 6 0.7046 5.5985 2.9678 16 6 -0.4642 6.2334 3.4475 17 1 -0.8953 7.0575 2.8984 18 6 -1.0625 5.7940 4.6339 19 7 -0.3836 5.0567 5.4748 20 14 -2.8303 6.2603 5.0169 21 1 -3.7449 5.2285 4.4655 22 1 -3.0117 6.3473 6.4882 23 1 -3.1397 7.5759 4.4014 24 6 0.9898 4.2696 3.3324 25 6 2.1297 3.6613 2.8588 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6765 1.9564 -0.8899 33 1 3.9329 0.9290 -0.8910 34 1 3.9337 0.9285 0.8891 35 1 4.1362 4.6378 -1.1897 36 1 3.1505 1.9230 -2.4121 37 1 3.1928 3.5508 -3.2784 38 1 5.7035 3.6694 -2.9332 39 1 5.6619 2.0420 -2.0666 40 1 3.4014 6.1883 1.0029 41 1 1.3817 7.3108 1.8358 42 1 -0.7981 4.7525 6.2973 43 1 0.3162 3.7289 3.9807 44 1 2.3504 2.6413 3.1369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:45 Heat of formation + Delta-G solvation = -49.954935 kcal Electronic energy + Delta-G solvation = -26011.675745 eV Core-core repulsion = 22441.742062 eV Total energy + Delta-G solvation = -3569.933682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.38659 -37.57402 -36.62228 -35.15958 -35.12381 -34.03696 -32.60595 -30.25927 -29.47517 -28.45703 -25.81764 -23.75118 -22.39954 -21.60445 -21.25568 -21.12398 -20.72932 -18.43498 -17.65595 -17.45315 -16.65717 -16.02693 -15.51113 -15.07740 -14.81070 -14.36679 -14.17430 -13.94681 -13.41617 -13.21772 -13.05800 -12.80870 -12.51550 -12.38733 -12.18901 -11.87236 -11.70996 -11.56217 -11.50188 -11.45821 -11.43054 -11.32588 -11.23562 -11.00248 -10.89970 -10.82804 -10.76103 -10.45131 -10.41856 -10.19887 -9.74215 -9.56080 -9.47596 -8.47783 -7.94170 -7.69780 -7.13891 -4.79974 1.17352 2.25867 2.87330 2.90208 2.92223 2.93012 3.52382 3.66103 3.88491 4.24167 4.55044 4.70784 4.92855 4.94433 4.99478 5.09173 5.15911 5.24347 5.30895 5.39446 5.57342 5.64064 5.68875 5.76226 5.86270 5.91774 5.94684 6.03694 6.06025 6.10957 6.12349 6.27585 6.31780 6.48838 6.55663 6.67052 6.69398 6.84067 7.01619 7.05909 7.33946 7.42670 7.63519 7.76908 7.96983 8.31996 8.51445 8.65206 9.77505 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.004319 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.526000 B = 6481.876410 C = 7362.205888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.976 5.976 6 C 0.098 3.902 7 C -0.185 4.185 8 C -0.197 4.197 9 S 2.691 3.309 10 O -0.980 6.980 11 O -0.980 6.980 12 C -0.784 4.784 13 C 0.002 3.998 14 C -0.238 4.238 15 C 0.140 3.860 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.765 5.765 20 Si 0.917 3.083 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.182 4.182 25 C -0.014 4.014 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.289 0.711 43 H 0.122 0.878 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -6.825 -10.732 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.187 4.187 4 C -0.009 4.009 5 N -0.807 5.807 6 C -0.010 4.010 7 C -0.224 4.224 8 C -0.236 4.236 9 S 2.792 3.208 10 O -0.971 6.971 11 O -0.971 6.971 12 C -0.880 4.880 13 C -0.018 4.018 14 C -0.259 4.259 15 C 0.136 3.864 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.387 5.387 20 Si 0.740 3.260 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.202 4.202 25 C -0.034 4.034 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.140 0.860 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.935 -6.991 -10.091 12.428 hybrid contribution -1.552 0.415 0.269 1.628 sum 0.383 -6.576 -9.822 11.827 Atomic orbital electron populations 1.21758 0.95769 1.01172 1.02248 1.21449 0.96082 0.96637 1.01737 1.22200 0.95447 0.97009 1.04023 1.21353 0.94161 0.81951 1.03485 1.57432 1.81147 1.21835 1.20278 1.21263 1.03661 0.95562 0.80477 1.23338 0.96333 1.03171 0.99545 1.23384 0.92885 1.03748 1.03605 1.01371 0.74951 0.72784 0.71681 1.93473 1.62050 1.57575 1.83992 1.93472 1.84636 1.57848 1.61135 1.29184 1.26149 1.07749 1.24966 1.20135 0.95078 0.91955 0.94640 1.21010 0.97256 0.99150 1.08455 1.17839 0.90192 0.91010 0.87323 1.19942 1.07135 1.14154 1.05115 0.89477 1.26134 1.00279 0.93163 0.95402 1.69827 1.37108 1.24262 1.07500 0.86153 0.80982 0.80452 0.78410 1.18810 1.19856 1.18199 1.21326 0.98533 0.95401 1.04974 1.20209 0.93078 0.97069 0.93043 0.93110 0.92276 0.92888 0.92380 0.91835 0.90440 0.91212 0.90845 0.89074 0.85052 0.88072 0.88306 0.88292 0.88754 0.87987 0.88256 0.89950 0.86045 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.34 5.93 -26.73 -0.16 -1.50 16 3 C -0.15 -1.96 5.31 -26.73 -0.14 -2.10 16 4 C 0.12 1.56 4.95 -4.04 -0.02 1.54 16 5 N -0.98 -15.23 3.12 -107.29 -0.33 -15.56 16 6 C 0.10 1.33 6.10 -67.93 -0.41 0.92 16 7 C -0.19 -1.97 9.26 -26.69 -0.25 -2.21 16 8 C -0.20 -2.19 10.12 -26.70 -0.27 -2.46 16 9 S 2.69 53.36 5.69 -107.50 -0.61 52.75 16 10 O -0.98 -21.19 16.41 -57.17 -0.94 -22.12 16 11 O -0.98 -21.31 15.81 -57.17 -0.90 -22.22 16 12 C -0.78 -17.27 6.00 -39.29 -0.24 -17.51 16 13 C 0.00 0.05 9.49 -39.66 -0.38 -0.33 16 14 C -0.24 -5.60 9.80 -38.88 -0.38 -5.98 16 15 C 0.14 3.52 5.57 -106.83 -0.60 2.92 16 16 C -0.44 -10.63 9.05 -37.74 -0.34 -10.97 16 17 H 0.09 2.01 7.91 -52.48 -0.41 1.59 16 18 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 19 N -0.76 -18.29 10.95 55.55 0.61 -17.68 16 20 Si 0.92 16.95 29.59 -169.99 -5.03 11.92 16 21 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 24 C -0.18 -4.50 8.70 -38.87 -0.34 -4.84 16 25 C -0.01 -0.31 8.38 -39.66 -0.33 -0.65 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.23 6.99 -51.93 -0.36 0.86 16 32 H 0.07 0.89 6.95 -51.93 -0.36 0.53 16 33 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 34 H 0.09 1.30 6.91 -51.93 -0.36 0.94 16 35 H 0.13 1.81 7.98 -51.92 -0.41 1.40 16 36 H 0.10 1.02 5.74 -51.93 -0.30 0.73 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.10 2.04 7.60 -52.49 -0.40 1.64 16 41 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.29 6.20 8.30 -40.82 -0.34 5.87 16 43 H 0.12 3.04 6.16 -52.48 -0.32 2.72 16 44 H 0.10 2.18 7.60 -52.48 -0.40 1.78 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -28.89 368.41 -11.84 -40.73 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.61 Total: 9.53 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: -3.57 Total: -42.90 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.27 Total: -33.24 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.84 Total: -44.34 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 53.36 SS G_CDS: -0.61 Total: 52.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.89 -11.84 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.224 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds